RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 RRNAD1Q96FB5 475 aaKnown RBP10.77□□□□□ -0.68
CLIP3-201ENST00000360535 LIN37Q96GY3 246 aaPredicted RBP10.77□□□□□ -0.68
CLIP3-201ENST00000360535 A6NIZ1 184 aa10.77□□□□□ -0.69
CLIP3-201ENST00000360535 TMEM200CA6NKL6 621 aa10.77□□□□□ -0.69
CLIP3-201ENST00000360535 H7C2Y5 167 aa10.77□□□□□ -0.69
CLIP3-201ENST00000360535 NME1P15531 152 aaKnown RBP10.77□□□□□ -0.69
CLIP3-201ENST00000360535 FSTP19883 344 aa10.77□□□□□ -0.69
CLIP3-201ENST00000360535 AMY2BP19961 511 aa10.77□□□□□ -0.69
CLIP3-201ENST00000360535 RAP1BP61224 184 aa10.77□□□□□ -0.69
CLIP3-201ENST00000360535 RAP1AP62834 184 aa10.77□□□□□ -0.69
CLIP3-201ENST00000360535 C1orf100Q5SVJ3 147 aa10.77□□□□□ -0.69
CLIP3-201ENST00000360535 CCDC36Q8IYA8 594 aa10.77□□□□□ -0.69
CLIP3-201ENST00000360535 NKAIN3Q8N8D7 197 aa10.77□□□□□ -0.69
CLIP3-201ENST00000360535 OR5AP2Q8NGF4 316 aa10.77□□□□□ -0.69
CLIP3-201ENST00000360535 OR51F2Q8NH61 342 aa10.77□□□□□ -0.69
CLIP3-201ENST00000360535 STT3BQ8TCJ2 826 aa10.77□□□□□ -0.69
CLIP3-201ENST00000360535 C2CD4CQ8TF44 421 aa10.77□□□□□ -0.69
CLIP3-201ENST00000360535 ARHGAP5-AS1Q96IT6 56 aa10.77□□□□□ -0.69
CLIP3-201ENST00000360535 SMIM3Q9BZL3 60 aa10.77□□□□□ -0.69
CLIP3-201ENST00000360535 BARX1Q9HBU1 254 aaPredicted RBP10.77□□□□□ -0.69
CLIP3-201ENST00000360535 CHST11Q9NPF2 352 aa10.77□□□□□ -0.69
CLIP3-201ENST00000360535 F5H5K5 113 aa10.77□□□□□ -0.69
CLIP3-201ENST00000360535 FBXO24O75426 580 aa10.77□□□□□ -0.69
CLIP3-201ENST00000360535 SRSF10O75494 262 aaKnown RBP10.77□□□□□ -0.69
CLIP3-201ENST00000360535 ACTL6AO96019 429 aa10.77□□□□□ -0.69
CLIP3-201ENST00000360535 GLRA1P23415 457 aa10.77□□□□□ -0.69
CLIP3-201ENST00000360535 C14orf28Q4W4Y0 310 aa10.77□□□□□ -0.69
CLIP3-201ENST00000360535 LCN10Q6JVE6 187 aa10.77□□□□□ -0.69
CLIP3-201ENST00000360535 OR10S1Q8NGN2 331 aa10.77□□□□□ -0.69
CLIP3-201ENST00000360535 ZNF285Q96NJ3 590 aa10.77□□□□□ -0.69
CLIP3-201ENST00000360535 EDEM2Q9BV94 578 aa10.77□□□□□ -0.69
CLIP3-201ENST00000360535 LMAN1LQ9HAT1 526 aa10.77□□□□□ -0.69
CLIP3-201ENST00000360535 SERINC1Q9NRX5 453 aa10.77□□□□□ -0.69
CLIP3-201ENST00000360535 ZNF701Q9NV72 531 aaPredicted RBP10.77□□□□□ -0.69
CLIP3-201ENST00000360535 FAM206AQ9NX38 181 aa10.77□□□□□ -0.69
CLIP3-201ENST00000360535 OR5AC2Q9NZP5 309 aa10.77□□□□□ -0.69
CLIP3-201ENST00000360535 ZNF319Q9P2F9 582 aa10.77□□□□□ -0.69
CLIP3-201ENST00000360535 FREM2Q5SZK8 3169 aa10.76□□□□□ -0.69
CLIP3-201ENST00000360535 TRBV11-1A0A0K0K1C0 115 aa10.76□□□□□ -0.69
CLIP3-201ENST00000360535 FTCDNL1E5RQL4 147 aa10.76□□□□□ -0.69
CLIP3-201ENST00000360535 CRHP06850 196 aa10.76□□□□□ -0.69
CLIP3-201ENST00000360535 ZNF121P58317 390 aaPredicted RBP10.76□□□□□ -0.69
CLIP3-201ENST00000360535 COL13A1Q5TAT6 717 aaPredicted RBP10.76□□□□□ -0.69
CLIP3-201ENST00000360535 PRAMEF20Q5VT98 475 aa10.76□□□□□ -0.69
CLIP3-201ENST00000360535 ZC3H10Q96K80 434 aaKnown RBP10.76□□□□□ -0.69
CLIP3-201ENST00000360535 KCNK17Q96T54 332 aa10.76□□□□□ -0.69
CLIP3-201ENST00000360535 METTL7AQ9H8H3 244 aa10.76□□□□□ -0.69
CLIP3-201ENST00000360535 SLC22A11Q9NSA0 550 aa10.76□□□□□ -0.69
CLIP3-201ENST00000360535 PPP4R1LQ9P1A2 415 aa10.76□□□□□ -0.69
CLIP3-201ENST00000360535 A0A0A6YYD4 124 aa10.76□□□□□ -0.69
CLIP3-201ENST00000360535 IGHV1OR15-9A0A0B4J2B8 117 aa10.76□□□□□ -0.69
CLIP3-201ENST00000360535 C5orf63A6NC05 138 aa10.76□□□□□ -0.69
CLIP3-201ENST00000360535 LILRA5A6NI73 299 aa10.76□□□□□ -0.69
CLIP3-201ENST00000360535 RAMP1O60894 148 aa10.76□□□□□ -0.69
CLIP3-201ENST00000360535 ATG12O94817 140 aa10.76□□□□□ -0.69
CLIP3-201ENST00000360535 SERPINA2P20848 420 aa10.76□□□□□ -0.69
CLIP3-201ENST00000360535 IGFBP4P22692 258 aa10.76□□□□□ -0.69
CLIP3-201ENST00000360535 GALNSP34059 522 aa10.76□□□□□ -0.69
CLIP3-201ENST00000360535 LTBRP36941 435 aa10.76□□□□□ -0.69
CLIP3-201ENST00000360535 CSNK2A1P68400 391 aaPredicted RBP10.76□□□□□ -0.69
CLIP3-201ENST00000360535 CHAF1BQ13112 559 aa10.76□□□□□ -0.69
CLIP3-201ENST00000360535 MYBPHQ13203 477 aa10.76□□□□□ -0.69
CLIP3-201ENST00000360535 PLAC9Q5JTB6 97 aa10.76□□□□□ -0.69
CLIP3-201ENST00000360535 H3F3CQ6NXT2 135 aa10.76□□□□□ -0.69
CLIP3-201ENST00000360535 CLEC9AQ6UXN8 241 aa10.76□□□□□ -0.69
CLIP3-201ENST00000360535 ZSCAN4Q8NAM6 433 aaPredicted RBP10.76□□□□□ -0.69
CLIP3-201ENST00000360535 CSNK2A3Q8NEV1 391 aa10.76□□□□□ -0.69
CLIP3-201ENST00000360535 OR51T1Q8NGJ9 327 aa10.76□□□□□ -0.69
CLIP3-201ENST00000360535 RNF133Q8WVZ7 376 aa10.76□□□□□ -0.69
CLIP3-201ENST00000360535 TMEM59Q9BXS4 323 aa10.76□□□□□ -0.69
CLIP3-201ENST00000360535 KLHL13Q9P2N7 655 aa10.76□□□□□ -0.69
CLIP3-201ENST00000360535 H0YIZ8 118 aa10.76□□□□□ -0.69
CLIP3-201ENST00000360535 RAD51DO75771 328 aa10.76□□□□□ -0.69
CLIP3-201ENST00000360535 SCGB1D2O95969 90 aa10.76□□□□□ -0.69
CLIP3-201ENST00000360535 HEXBP07686 556 aa10.76□□□□□ -0.69
CLIP3-201ENST00000360535 PVALBP20472 110 aaPredicted RBP10.76□□□□□ -0.69
CLIP3-201ENST00000360535 ZNF41P51814 821 aaPredicted RBP10.76□□□□□ -0.69
CLIP3-201ENST00000360535 LPCAT3Q6P1A2 487 aa10.76□□□□□ -0.69
CLIP3-201ENST00000360535 LRRC18Q8N456 261 aa10.76□□□□□ -0.69
CLIP3-201ENST00000360535 OR5H2Q8NGV7 314 aa10.76□□□□□ -0.69
CLIP3-201ENST00000360535 EDAQ92838 391 aa10.76□□□□□ -0.69
CLIP3-201ENST00000360535 DDIT4LQ96D03 193 aa10.76□□□□□ -0.69
CLIP3-201ENST00000360535 DNTTIP1Q9H147 329 aa10.76□□□□□ -0.69
CLIP3-201ENST00000360535 PIGMQ9H3S5 423 aa10.76□□□□□ -0.69
CLIP3-201ENST00000360535 RHBDD3Q9Y3P4 386 aa10.76□□□□□ -0.69
CLIP3-201ENST00000360535 EML6Q6ZMW3 1958 aa10.76□□□□□ -0.69
CLIP3-201ENST00000360535 A0A1W2PQD3 144 aa10.75□□□□□ -0.69
CLIP3-201ENST00000360535 TMEM218A2RU14 115 aa10.75□□□□□ -0.69
CLIP3-201ENST00000360535 ZNF878C9JN71 531 aa10.75□□□□□ -0.69
CLIP3-201ENST00000360535 SERPINA5P05154 406 aa10.75□□□□□ -0.69
CLIP3-201ENST00000360535 SLC25A4P12235 298 aa10.75□□□□□ -0.69
CLIP3-201ENST00000360535 TPT1P13693 172 aaKnown RBP10.75□□□□□ -0.69
CLIP3-201ENST00000360535 NME2P22392 152 aa10.75□□□□□ -0.69
CLIP3-201ENST00000360535 AKR1C3P42330 323 aa10.75□□□□□ -0.69
CLIP3-201ENST00000360535 C17orf67Q0P5P2 114 aa10.75□□□□□ -0.69
CLIP3-201ENST00000360535 TDGQ13569 410 aa10.75□□□□□ -0.69
CLIP3-201ENST00000360535 LDLRAD3Q86YD5 345 aa10.75□□□□□ -0.69
CLIP3-201ENST00000360535 UEVLDQ8IX04 471 aa10.75□□□□□ -0.69
CLIP3-201ENST00000360535 TERB2Q8NHR7 220 aa10.75□□□□□ -0.69
CLIP3-201ENST00000360535 LPAR5Q9H1C0 372 aa10.75□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms