RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 RPS19BP1Q86WX3 136 aaKnown RBP13.61□□□□□ -0.23
UPF3B-202ENST00000345865 SSC4DQ8WTU2 575 aa13.61□□□□□ -0.23
UPF3B-202ENST00000345865 ZNF837Q96EG3 531 aaPredicted RBP13.61□□□□□ -0.23
UPF3B-202ENST00000345865 BANF2Q9H503 90 aa13.61□□□□□ -0.23
UPF3B-202ENST00000345865 SLC2A8Q9NY64 477 aa13.61□□□□□ -0.23
UPF3B-202ENST00000345865 MRPS28Q9Y2Q9 187 aaKnown RBP13.61□□□□□ -0.23
UPF3B-202ENST00000345865 KIAA1549Q9HCM3 1950 aa13.61□□□□□ -0.23
UPF3B-202ENST00000345865 SOCS1O15524 211 aa13.6□□□□□ -0.23
UPF3B-202ENST00000345865 PPP3CBP16298 524 aa13.6□□□□□ -0.23
UPF3B-202ENST00000345865 CD96P40200 585 aa13.6□□□□□ -0.23
UPF3B-202ENST00000345865 CSNK1A1P48729 337 aa13.6□□□□□ -0.23
UPF3B-202ENST00000345865 DSCR4P56555 118 aaPredicted RBP13.6□□□□□ -0.23
UPF3B-202ENST00000345865 ENDOGQ14249 297 aaKnown RBP13.6□□□□□ -0.23
UPF3B-202ENST00000345865 TRIM61Q5EBN2 209 aa13.6□□□□□ -0.23
UPF3B-202ENST00000345865 OR14K1Q8NGZ2 314 aa13.6□□□□□ -0.23
UPF3B-202ENST00000345865 SLC39A7Q92504 469 aa13.6□□□□□ -0.23
UPF3B-202ENST00000345865 TMEM54Q969K7 222 aa13.6□□□□□ -0.23
UPF3B-202ENST00000345865 NABP1Q96AH0 204 aa13.6□□□□□ -0.23
UPF3B-202ENST00000345865 WBP1Q96G27 269 aa13.6□□□□□ -0.23
UPF3B-202ENST00000345865 LIN37Q96GY3 246 aaPredicted RBP13.6□□□□□ -0.23
UPF3B-202ENST00000345865 SMOC1Q9H4F8 434 aa13.6□□□□□ -0.23
UPF3B-202ENST00000345865 A0A0G2JMM0 328 aa13.59□□□□□ -0.23
UPF3B-202ENST00000345865 A0A0J9YW62 118 aa13.59□□□□□ -0.23
UPF3B-202ENST00000345865 A0A1W2PPB8 328 aa13.59□□□□□ -0.23
UPF3B-202ENST00000345865 A0A1W2PRS3 328 aa13.59□□□□□ -0.23
UPF3B-202ENST00000345865 OR5H15A6NDH6 313 aa13.59□□□□□ -0.23
UPF3B-202ENST00000345865 OR2AT4A6NND4 320 aa13.59□□□□□ -0.23
UPF3B-202ENST00000345865 KIR3DP1A8MWS1 328 aa13.59□□□□□ -0.23
UPF3B-202ENST00000345865 C9J4A7 227 aa13.59□□□□□ -0.23
UPF3B-202ENST00000345865 TLX3O43711 291 aaPredicted RBP13.59□□□□□ -0.23
UPF3B-202ENST00000345865 RRASP10301 218 aa13.59□□□□□ -0.23
UPF3B-202ENST00000345865 CASRP41180 1078 aa13.59□□□□□ -0.23
UPF3B-202ENST00000345865 TMEM50BP56557 158 aa13.59□□□□□ -0.23
UPF3B-202ENST00000345865 MEF2DQ14814 521 aa13.59□□□□□ -0.23
UPF3B-202ENST00000345865 CLPPQ16740 277 aaPredicted RBP13.59□□□□□ -0.23
UPF3B-202ENST00000345865 TMEM123Q8N131 208 aa13.59□□□□□ -0.23
UPF3B-202ENST00000345865 LRRC18Q8N456 261 aa13.59□□□□□ -0.23
UPF3B-202ENST00000345865 TMEM156Q8N614 296 aa13.59□□□□□ -0.23
UPF3B-202ENST00000345865 ZIC4Q8N9L1 334 aa13.59□□□□□ -0.23
UPF3B-202ENST00000345865 STEAP2Q8NFT2 490 aa13.59□□□□□ -0.23
UPF3B-202ENST00000345865 ARL6Q9H0F7 186 aa13.59□□□□□ -0.23
UPF3B-202ENST00000345865 CST11Q9H112 138 aa13.59□□□□□ -0.23
UPF3B-202ENST00000345865 FN3KRPQ9HA64 309 aa13.59□□□□□ -0.23
UPF3B-202ENST00000345865 KCNN3Q9UGI6 736 aa13.59□□□□□ -0.23
UPF3B-202ENST00000345865 NSG1A0A0A6YYJ2 146 aa13.59□□□□□ -0.23
UPF3B-202ENST00000345865 DISC1C4P0D8 188 aa13.59□□□□□ -0.23
UPF3B-202ENST00000345865 TNFSF11O14788 317 aa13.59□□□□□ -0.23
UPF3B-202ENST00000345865 MPIG6BO95866 241 aa13.59□□□□□ -0.23
UPF3B-202ENST00000345865 ERCC1P07992 297 aaPredicted RBP13.59□□□□□ -0.23
UPF3B-202ENST00000345865 MLF1P58340 268 aa13.59□□□□□ -0.23
UPF3B-202ENST00000345865 RPS18P62269 152 aaKnown RBP13.59□□□□□ -0.23
UPF3B-202ENST00000345865 LSM6P62312 80 aaKnown RBP13.59□□□□□ -0.23
UPF3B-202ENST00000345865 TRA2AQ13595 282 aaKnown RBP eCLIP13.59□□□□□ -0.232e-6■■■■■ 34.6
UPF3B-202ENST00000345865 C10orf128Q5T292 105 aa13.59□□□□□ -0.23
UPF3B-202ENST00000345865 OR9K2Q8NGE7 335 aa13.59□□□□□ -0.23
UPF3B-202ENST00000345865 ZNF775Q96BV0 537 aaPredicted RBP13.59□□□□□ -0.23
UPF3B-202ENST00000345865 SRXN1Q9BYN0 137 aa13.59□□□□□ -0.23
UPF3B-202ENST00000345865 F5H5K5 113 aa13.58□□□□□ -0.23
UPF3B-202ENST00000345865 CDC14BO60729 498 aa13.58□□□□□ -0.23
UPF3B-202ENST00000345865 IGLV3-1P01715 115 aa13.58□□□□□ -0.23
UPF3B-202ENST00000345865 HLA-AP01891 365 aaKnown RBP13.58□□□□□ -0.23
UPF3B-202ENST00000345865 PDGFAP04085 211 aa13.58□□□□□ -0.23
UPF3B-202ENST00000345865 HCKP08631 526 aa13.58□□□□□ -0.23
UPF3B-202ENST00000345865 C4BPBP20851 252 aa13.58□□□□□ -0.23
UPF3B-202ENST00000345865 MSR1P21757 451 aa13.58□□□□□ -0.23
UPF3B-202ENST00000345865 ZBTB25P24278 435 aa13.58□□□□□ -0.23
UPF3B-202ENST00000345865 MPZP25189 248 aa13.58□□□□□ -0.23
UPF3B-202ENST00000345865 CTSSP25774 331 aa13.58□□□□□ -0.23
UPF3B-202ENST00000345865 GRB2P62993 217 aaKnown RBP13.58□□□□□ -0.23
UPF3B-202ENST00000345865 ALKAL2Q6UX46 152 aa13.58□□□□□ -0.23
UPF3B-202ENST00000345865 PGAP1Q75T13 922 aa13.58□□□□□ -0.23
UPF3B-202ENST00000345865 DOK3Q7L591 496 aa13.58□□□□□ -0.23
UPF3B-202ENST00000345865 C1QL2Q7Z5L3 287 aa13.58□□□□□ -0.23
UPF3B-202ENST00000345865 CCDC28AQ8IWP9 274 aa13.58□□□□□ -0.23
UPF3B-202ENST00000345865 PRRT1Q99946 306 aa13.58□□□□□ -0.23
UPF3B-202ENST00000345865 NELFAQ9H3P2 528 aa13.58□□□□□ -0.23
UPF3B-202ENST00000345865 HPF1Q9NWY4 346 aa13.58□□□□□ -0.23
UPF3B-202ENST00000345865 DKKL1Q9UK85 242 aa13.58□□□□□ -0.23
UPF3B-202ENST00000345865 TMA7Q9Y2S6 64 aaKnown RBP13.58□□□□□ -0.23
UPF3B-202ENST00000345865 I3L521 148 aa13.58□□□□□ -0.24
UPF3B-202ENST00000345865 CCSO14618 274 aa13.58□□□□□ -0.24
UPF3B-202ENST00000345865 LAMTOR5O43504 91 aa13.58□□□□□ -0.24
UPF3B-202ENST00000345865 RAD51DO75771 328 aa13.58□□□□□ -0.24
UPF3B-202ENST00000345865 PMP2P02689 132 aa13.58□□□□□ -0.24
UPF3B-202ENST00000345865 DBHP09172 617 aa13.58□□□□□ -0.24
UPF3B-202ENST00000345865 ZNF133P52736 654 aaPredicted RBP13.58□□□□□ -0.24
UPF3B-202ENST00000345865 RAB14P61106 215 aa13.58□□□□□ -0.24
UPF3B-202ENST00000345865 PPP1R1AQ13522 171 aa13.58□□□□□ -0.24
UPF3B-202ENST00000345865 AANATQ16613 207 aa13.58□□□□□ -0.24
UPF3B-202ENST00000345865 LIN54Q6MZP7 749 aa13.58□□□□□ -0.24
UPF3B-202ENST00000345865 SLC25A42Q86VD7 318 aa13.58□□□□□ -0.24
UPF3B-202ENST00000345865 ADAD2Q8NCV1 583 aaKnown RBP13.58□□□□□ -0.24
UPF3B-202ENST00000345865 OR5M8Q8NGP6 311 aa13.58□□□□□ -0.24
UPF3B-202ENST00000345865 C1QTNF6Q9BXI9 259 aa13.58□□□□□ -0.24
UPF3B-202ENST00000345865 SLC39A1Q9NY26 324 aa13.58□□□□□ -0.24
UPF3B-202ENST00000345865 RFPL4AA6NLU0 287 aa13.57□□□□□ -0.24
UPF3B-202ENST00000345865 NPIPA2E9PIF3 369 aa13.57□□□□□ -0.24
UPF3B-202ENST00000345865 RFPL4AL1F8VTS6 287 aa13.57□□□□□ -0.24
UPF3B-202ENST00000345865 NPIPA3F8WFD2 350 aa13.57□□□□□ -0.24
UPF3B-202ENST00000345865 STK17BO94768 372 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms