RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 PAHP00439 452 aa12.26□□□□□ -0.45
SS18-201ENST00000269137 CALCBP10092 127 aa12.26□□□□□ -0.45
SS18-201ENST00000269137 EDN3P14138 238 aa12.26□□□□□ -0.45
SS18-201ENST00000269137 ZNF20P17024 532 aa12.26□□□□□ -0.45
SS18-201ENST00000269137 GFOD2Q3B7J2 385 aa12.26□□□□□ -0.45
SS18-201ENST00000269137 HES5Q5TA89 166 aa12.26□□□□□ -0.45
SS18-201ENST00000269137 METAP1DQ6UB28 335 aaPredicted RBP12.26□□□□□ -0.45
SS18-201ENST00000269137 BEND4Q6ZU67 534 aa12.26□□□□□ -0.45
SS18-201ENST00000269137 PGAP1Q75T13 922 aa12.26□□□□□ -0.45
SS18-201ENST00000269137 LRRC28Q86X40 367 aaPredicted RBP12.26□□□□□ -0.45
SS18-201ENST00000269137 ZNF584Q8IVC4 421 aa12.26□□□□□ -0.45
SS18-201ENST00000269137 NKAIN3Q8N8D7 197 aa12.26□□□□□ -0.45
SS18-201ENST00000269137 DNAAF1Q8NEP3 725 aa12.26□□□□□ -0.45
SS18-201ENST00000269137 POM121L2Q96KW2 1035 aa12.26□□□□□ -0.45
SS18-201ENST00000269137 ZNF75AQ96N20 296 aa12.26□□□□□ -0.45
SS18-201ENST00000269137 POLEQ07864 2286 aa12.26□□□□□ -0.45
SS18-201ENST00000269137 PKD1L2Q7Z442 2459 aa12.25□□□□□ -0.45
SS18-201ENST00000269137 RAD51DO75771 328 aa12.25□□□□□ -0.45
SS18-201ENST00000269137 SERPINA5P05154 406 aa12.25□□□□□ -0.45
SS18-201ENST00000269137 SNRPBP14678 240 aaKnown RBP12.25□□□□□ -0.45
SS18-201ENST00000269137 PTBP1P26599 531 aaKnown RBP eCLIP12.25□□□□□ -0.453e-9■■■■□ 23.3
SS18-201ENST00000269137 GNALP38405 381 aa12.25□□□□□ -0.45
SS18-201ENST00000269137 SCAND1P57086 179 aa12.25□□□□□ -0.45
SS18-201ENST00000269137 UBE2NP61088 152 aaKnown RBP12.25□□□□□ -0.45
SS18-201ENST00000269137 IFITM3Q01628 133 aa12.25□□□□□ -0.45
SS18-201ENST00000269137 RBPJQ06330 500 aa12.25□□□□□ -0.45
SS18-201ENST00000269137 GLT8D1Q68CQ7 371 aa12.25□□□□□ -0.45
SS18-201ENST00000269137 FAM166AQ6J272 317 aa12.25□□□□□ -0.45
SS18-201ENST00000269137 CNIH2Q6PI25 160 aa12.25□□□□□ -0.45
SS18-201ENST00000269137 MDP1Q86V88 176 aa12.25□□□□□ -0.45
SS18-201ENST00000269137 C17orf78Q8N4C9 275 aa12.25□□□□□ -0.45
SS18-201ENST00000269137 SAMD12Q8N8I0 201 aa12.25□□□□□ -0.45
SS18-201ENST00000269137 OR1M1Q8NGA1 313 aa12.25□□□□□ -0.45
SS18-201ENST00000269137 OR51A2Q8NGJ7 313 aa12.25□□□□□ -0.45
SS18-201ENST00000269137 ZNF671Q8TAW3 534 aa12.25□□□□□ -0.45
SS18-201ENST00000269137 OPN3Q9H1Y3 402 aaPredicted RBP12.25□□□□□ -0.45
SS18-201ENST00000269137 TMEM138Q9NPI0 162 aa12.25□□□□□ -0.45
SS18-201ENST00000269137 CYSLTR2Q9NS75 346 aa12.25□□□□□ -0.45
SS18-201ENST00000269137 A0A0B4J203 849 aa12.25□□□□□ -0.45
SS18-201ENST00000269137 C5orf49A4QMS7 147 aa12.25□□□□□ -0.45
SS18-201ENST00000269137 FABP12A6NFH5 140 aa12.25□□□□□ -0.45
SS18-201ENST00000269137 SLC17A2O00624 439 aa12.25□□□□□ -0.45
SS18-201ENST00000269137 ALX3O95076 343 aa12.25□□□□□ -0.45
SS18-201ENST00000269137 APOA1P02647 267 aa12.25□□□□□ -0.45
SS18-201ENST00000269137 ELK1P19419 428 aa12.25□□□□□ -0.45
SS18-201ENST00000269137 RAB3AP20336 220 aa12.25□□□□□ -0.45
SS18-201ENST00000269137 BDKRB2P30411 391 aa12.25□□□□□ -0.45
SS18-201ENST00000269137 THBS4P35443 961 aa12.25□□□□□ -0.45
SS18-201ENST00000269137 C3P1Q6ZMU1 363 aa12.25□□□□□ -0.45
SS18-201ENST00000269137 LYPD6Q86Y78 171 aa12.25□□□□□ -0.45
SS18-201ENST00000269137 DRAXINQ8NBI3 349 aaPredicted RBP12.25□□□□□ -0.45
SS18-201ENST00000269137 OR5H6Q8NGV6 325 aa12.25□□□□□ -0.45
SS18-201ENST00000269137 ITFG2Q969R8 447 aa12.25□□□□□ -0.45
SS18-201ENST00000269137 SPSB4Q96A44 273 aa12.25□□□□□ -0.45
SS18-201ENST00000269137 FOXRED1Q96CU9 486 aaPredicted RBP12.25□□□□□ -0.45
SS18-201ENST00000269137 REEP6Q96HR9 211 aa12.25□□□□□ -0.45
SS18-201ENST00000269137 LIN7BQ9HAP6 207 aa12.25□□□□□ -0.45
SS18-201ENST00000269137 STEAP1Q9UHE8 339 aa12.25□□□□□ -0.45
SS18-201ENST00000269137 ACACBO00763 2458 aa12.24□□□□□ -0.45
SS18-201ENST00000269137 XRCC2O43543 280 aa12.24□□□□□ -0.45
SS18-201ENST00000269137 ERCC1P07992 297 aaPredicted RBP12.24□□□□□ -0.45
SS18-201ENST00000269137 HOXD11P31277 338 aaPredicted RBP12.24□□□□□ -0.45
SS18-201ENST00000269137 APLNRP35414 380 aa12.24□□□□□ -0.45
SS18-201ENST00000269137 SPOCK1Q08629 439 aa12.24□□□□□ -0.45
SS18-201ENST00000269137 OXA1LQ15070 435 aa12.24□□□□□ -0.45
SS18-201ENST00000269137 C1orf100Q5SVJ3 147 aa12.24□□□□□ -0.45
SS18-201ENST00000269137 GLYATL3Q5SZD4 288 aa12.24□□□□□ -0.45
SS18-201ENST00000269137 XKRXQ6PP77 449 aa12.24□□□□□ -0.45
SS18-201ENST00000269137 UTS2BQ765I0 119 aa12.24□□□□□ -0.45
SS18-201ENST00000269137 CDH26Q8IXH8 852 aa12.24□□□□□ -0.45
SS18-201ENST00000269137 MINDY2Q8NBR6 621 aa12.24□□□□□ -0.45
SS18-201ENST00000269137 LGALS14Q8TCE9 139 aa12.24□□□□□ -0.45
SS18-201ENST00000269137 PP6455Q8WZ26 134 aa12.24□□□□□ -0.45
SS18-201ENST00000269137 AKAP1Q92667 903 aaKnown RBP eCLIP12.24□□□□□ -0.45
SS18-201ENST00000269137 APOBEC3DQ96AK3 386 aaPredicted RBP12.24□□□□□ -0.45
SS18-201ENST00000269137 CCDC32Q9BV29 185 aa12.24□□□□□ -0.45
SS18-201ENST00000269137 PLEKHA1Q9HB21 404 aa12.24□□□□□ -0.45
SS18-201ENST00000269137 OBP2BQ9NPH6 170 aa12.24□□□□□ -0.45
SS18-201ENST00000269137 RHBDL2Q9NX52 303 aa12.24□□□□□ -0.45
SS18-201ENST00000269137 ETV7Q9Y603 341 aa12.24□□□□□ -0.45
SS18-201ENST00000269137 A6NIN4 97 aa12.23□□□□□ -0.45
SS18-201ENST00000269137 SULT1B1O43704 296 aa12.23□□□□□ -0.45
SS18-201ENST00000269137 EIF4EP06730 217 aaKnown RBP12.23□□□□□ -0.45
SS18-201ENST00000269137 ZNF14P17017 642 aaPredicted RBP12.23□□□□□ -0.45
SS18-201ENST00000269137 OPRM1P35372 400 aa12.23□□□□□ -0.45
SS18-201ENST00000269137 RIN1Q13671 783 aa12.23□□□□□ -0.45
SS18-201ENST00000269137 ITPR1Q14643 2758 aa12.23□□□□□ -0.45
SS18-201ENST00000269137 RAB11BQ15907 218 aa12.23□□□□□ -0.45
SS18-201ENST00000269137 ZNF79Q15937 498 aa12.23□□□□□ -0.45
SS18-201ENST00000269137 TRIM16LQ309B1 348 aa12.23□□□□□ -0.45
SS18-201ENST00000269137 FAM131AQ6UXB0 335 aa12.23□□□□□ -0.45
SS18-201ENST00000269137 CXorf67Q86X51 503 aaPredicted RBP12.23□□□□□ -0.45
SS18-201ENST00000269137 WDR31Q8NA23 367 aa12.23□□□□□ -0.45
SS18-201ENST00000269137 OR6M1Q8NGM8 313 aa12.23□□□□□ -0.45
SS18-201ENST00000269137 OR2AE1Q8NHA4 323 aa12.23□□□□□ -0.45
SS18-201ENST00000269137 SDHCQ99643 169 aaPredicted RBP12.23□□□□□ -0.45
SS18-201ENST00000269137 PPP1R3EQ9H7J1 279 aa12.23□□□□□ -0.45
SS18-201ENST00000269137 OR5V1Q9UGF6 321 aa12.23□□□□□ -0.45
SS18-201ENST00000269137 TINAGQ9UJW2 476 aa12.23□□□□□ -0.45
SS18-201ENST00000269137 FAM25AB3EWG3 89 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms