RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 HIST2H2ABQ8IUE6 130 aaPredicted RBP11□□□□□ -0.65
NUP88-201ENST00000225696 FOXRED2Q8IWF2 684 aa11□□□□□ -0.65
NUP88-201ENST00000225696 ZNF101Q8IZC7 436 aa11□□□□□ -0.65
NUP88-201ENST00000225696 PNLDC1Q8NA58 520 aaKnown RBP11□□□□□ -0.65
NUP88-201ENST00000225696 OR51E1Q8TCB6 317 aa11□□□□□ -0.65
NUP88-201ENST00000225696 RNF133Q8WVZ7 376 aa11□□□□□ -0.65
NUP88-201ENST00000225696 ASB10Q8WXI3 467 aa11□□□□□ -0.65
NUP88-201ENST00000225696 C1orf147Q96MC9 270 aaPredicted RBP11□□□□□ -0.65
NUP88-201ENST00000225696 NUDT22Q9BRQ3 303 aa11□□□□□ -0.65
NUP88-201ENST00000225696 RTBDNQ9BSG5 229 aaPredicted RBP11□□□□□ -0.65
NUP88-201ENST00000225696 SEC11CQ9BY50 192 aa11□□□□□ -0.65
NUP88-201ENST00000225696 IFT22Q9H7X7 185 aa11□□□□□ -0.65
NUP88-201ENST00000225696 ZFP57Q9NU63 452 aa11□□□□□ -0.65
NUP88-201ENST00000225696 GPR132Q9UNW8 380 aa11□□□□□ -0.65
NUP88-201ENST00000225696 HS3ST3A1Q9Y663 406 aa11□□□□□ -0.65
NUP88-201ENST00000225696 IGKV3D-11A0A0A0MRZ8 115 aa11□□□□□ -0.65
NUP88-201ENST00000225696 BLACEA4D250 179 aa11□□□□□ -0.65
NUP88-201ENST00000225696 COLCA2A8K830 154 aa11□□□□□ -0.65
NUP88-201ENST00000225696 METTL12A8MUP2 240 aa11□□□□□ -0.65
NUP88-201ENST00000225696 TMEM14DPA8MWL7 114 aa11□□□□□ -0.65
NUP88-201ENST00000225696 LRP3O75074 770 aa11□□□□□ -0.65
NUP88-201ENST00000225696 EIF3GO75821 320 aaKnown RBP eCLIP11□□□□□ -0.65
NUP88-201ENST00000225696 HTR3BO95264 441 aa11□□□□□ -0.65
NUP88-201ENST00000225696 BPNT1O95861 308 aa11□□□□□ -0.65
NUP88-201ENST00000225696 IGHMP01871 453 aa11□□□□□ -0.65
NUP88-201ENST00000225696 SERPINA5P05154 406 aa11□□□□□ -0.65
NUP88-201ENST00000225696 GLRA1P23415 457 aa11□□□□□ -0.65
NUP88-201ENST00000225696 HSD11B1P28845 292 aa11□□□□□ -0.65
NUP88-201ENST00000225696 CAPZBP47756 277 aa11□□□□□ -0.65
NUP88-201ENST00000225696 OR3A4PP47883 348 aa11□□□□□ -0.65
NUP88-201ENST00000225696 MMP16P51512 607 aa11□□□□□ -0.65
NUP88-201ENST00000225696 NAAAQ02083 359 aa11□□□□□ -0.65
NUP88-201ENST00000225696 PNLIPRP3Q17RR3 467 aa11□□□□□ -0.65
NUP88-201ENST00000225696 AKIRIN2Q53H80 203 aa11□□□□□ -0.65
NUP88-201ENST00000225696 TMEM128Q5BJH2 165 aa11□□□□□ -0.65
NUP88-201ENST00000225696 C9orf50Q5SZB4 431 aa11□□□□□ -0.65
NUP88-201ENST00000225696 RPL7L1Q6DKI1 246 aaKnown RBP11□□□□□ -0.65
NUP88-201ENST00000225696 SLC22A24Q8N4F4 322 aa11□□□□□ -0.65
NUP88-201ENST00000225696 DMBX1Q8NFW5 382 aa11□□□□□ -0.65
NUP88-201ENST00000225696 SLAMF6Q96DU3 332 aa11□□□□□ -0.65
NUP88-201ENST00000225696 FBXO17Q96EF6 278 aa11□□□□□ -0.65
NUP88-201ENST00000225696 KCNK17Q96T54 332 aa11□□□□□ -0.65
NUP88-201ENST00000225696 PBOV1Q9GZY1 135 aa11□□□□□ -0.65
NUP88-201ENST00000225696 BIN3Q9NQY0 253 aa11□□□□□ -0.65
NUP88-201ENST00000225696 ZNF319Q9P2F9 582 aa11□□□□□ -0.65
NUP88-201ENST00000225696 PCDHGA1Q9Y5H4 931 aa11□□□□□ -0.65
NUP88-201ENST00000225696 PMS2P1A4D2B8 440 aa10.99□□□□□ -0.65
NUP88-201ENST00000225696 MBTPS2O43462 519 aa10.99□□□□□ -0.65
NUP88-201ENST00000225696 SNAPINO95295 136 aa10.99□□□□□ -0.65
NUP88-201ENST00000225696 MPIG6BO95866 241 aa10.99□□□□□ -0.65
NUP88-201ENST00000225696 OPN1LWP04000 364 aa10.99□□□□□ -0.65
NUP88-201ENST00000225696 NME2P22392 152 aa10.99□□□□□ -0.65
NUP88-201ENST00000225696 GALNSP34059 522 aa10.99□□□□□ -0.65
NUP88-201ENST00000225696 ZNF93P35789 620 aaPredicted RBP10.99□□□□□ -0.65
NUP88-201ENST00000225696 CX3CR1P49238 355 aa10.99□□□□□ -0.65
NUP88-201ENST00000225696 FOXK1P85037 733 aa10.99□□□□□ -0.65
NUP88-201ENST00000225696 POU3F1Q03052 451 aaPredicted RBP10.99□□□□□ -0.65
NUP88-201ENST00000225696 TGIF1Q15583 401 aa10.99□□□□□ -0.65
NUP88-201ENST00000225696 GLIPR1L1Q6UWM5 242 aa10.99□□□□□ -0.65
NUP88-201ENST00000225696 SHISA6Q6ZSJ9 500 aa10.99□□□□□ -0.65
NUP88-201ENST00000225696 ADAMTS18Q8TE60 1221 aa10.99□□□□□ -0.65
NUP88-201ENST00000225696 SFT2D1Q8WV19 159 aa10.99□□□□□ -0.65
NUP88-201ENST00000225696 C11orf40Q8WZ69 217 aa10.99□□□□□ -0.65
NUP88-201ENST00000225696 CRB3Q9BUF7 120 aa10.99□□□□□ -0.65
NUP88-201ENST00000225696 WWTR1Q9GZV5 400 aa10.99□□□□□ -0.65
NUP88-201ENST00000225696 PARP12Q9H0J9 701 aaKnown RBP10.99□□□□□ -0.65
NUP88-201ENST00000225696 FBRSQ9HAH7 460 aa10.99□□□□□ -0.65
NUP88-201ENST00000225696 SLC2A4RGQ9NR83 387 aa10.99□□□□□ -0.65
NUP88-201ENST00000225696 GSKIPQ9P0R6 139 aa10.99□□□□□ -0.65
NUP88-201ENST00000225696 ATPIF1Q9UII2 106 aa10.99□□□□□ -0.65
NUP88-201ENST00000225696 MYO7BQ6PIF6 2116 aa10.99□□□□□ -0.65
NUP88-201ENST00000225696 TMEM150CB9EJG8 249 aa10.99□□□□□ -0.65
NUP88-201ENST00000225696 AHSA1O95433 338 aa10.99□□□□□ -0.65
NUP88-201ENST00000225696 SFT2D2O95562 160 aa10.99□□□□□ -0.65
NUP88-201ENST00000225696 ACAA1P09110 424 aaPredicted RBP10.99□□□□□ -0.65
NUP88-201ENST00000225696 SFTA3P0C7M3 94 aa10.99□□□□□ -0.65
NUP88-201ENST00000225696 CBR1P16152 277 aa10.99□□□□□ -0.65
NUP88-201ENST00000225696 PTGFRP43088 359 aa10.99□□□□□ -0.65
NUP88-201ENST00000225696 SNRPEP62304 92 aaKnown RBP10.99□□□□□ -0.65
NUP88-201ENST00000225696 SPEM2Q0P670 501 aa10.99□□□□□ -0.65
NUP88-201ENST00000225696 MFAP5Q13361 173 aa10.99□□□□□ -0.65
NUP88-201ENST00000225696 TDGQ13569 410 aa10.99□□□□□ -0.65
NUP88-201ENST00000225696 HABP2Q14520 560 aaPredicted RBP10.99□□□□□ -0.65
NUP88-201ENST00000225696 AVPI1Q5T686 147 aa10.99□□□□□ -0.65
NUP88-201ENST00000225696 COL13A1Q5TAT6 717 aaPredicted RBP10.99□□□□□ -0.65
NUP88-201ENST00000225696 OR2A2Q6IF42 318 aa10.99□□□□□ -0.65
NUP88-201ENST00000225696 RBMS3Q6XE24 437 aaKnown RBP10.99□□□□□ -0.65
NUP88-201ENST00000225696 GRINAQ7Z429 371 aa10.99□□□□□ -0.65
NUP88-201ENST00000225696 OR5AS1Q8N127 324 aa10.99□□□□□ -0.65
NUP88-201ENST00000225696 DTWD2Q8NBA8 298 aa10.99□□□□□ -0.65
NUP88-201ENST00000225696 OR13G1Q8NGZ3 307 aa10.99□□□□□ -0.65
NUP88-201ENST00000225696 ADAMTS17Q8TE56 1095 aa10.99□□□□□ -0.65
NUP88-201ENST00000225696 TMEM41AQ96HV5 264 aa10.99□□□□□ -0.65
NUP88-201ENST00000225696 ARHGAP5-AS1Q96IT6 56 aa10.99□□□□□ -0.65
NUP88-201ENST00000225696 SLC5A7Q9GZV3 580 aa10.99□□□□□ -0.65
NUP88-201ENST00000225696 CYP8B1Q9UNU6 501 aa10.99□□□□□ -0.65
NUP88-201ENST00000225696 FLVCR1Q9Y5Y0 555 aa10.99□□□□□ -0.65
NUP88-201ENST00000225696 FER1L5A0AVI2 2057 aa10.98□□□□□ -0.65
NUP88-201ENST00000225696 IGHV3-20A0A0C4DH32 117 aa10.98□□□□□ -0.65
NUP88-201ENST00000225696 PQLC2LA1A4F0 135 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms