RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 BEST3Q8N1M1 668 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 GATAD1Q8WUU5 269 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 DNAJA3Q96EY1 480 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 A4GALTQ9NPC4 353 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 HS3ST3A1Q9Y663 406 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 PRAG1Q86YV5 1406 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 GAPVD1Q14C86 1478 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 ANKRD31Q8N7Z5 1873 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 TMEM8BA6NDV4 472 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 MFNGO00587 321 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 VTNP04004 478 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 MAS1P04201 325 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 GABRA1P14867 456 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 RPL3P39023 403 aaKnown RBP3.22□□□□□ -1.89
SCN1A-221ENST00000641996 MARCH9Q86YJ5 346 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 PNKDQ8N490 385 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 OR4L1Q8NH43 312 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 PLPPR2Q96GM1 343 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 FZD8Q9H461 694 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 ELOVL2Q9NXB9 296 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 PEF1Q9UBV8 284 aaKnown RBP3.22□□□□□ -1.89
SCN1A-221ENST00000641996 WIPF3A6NGB9 483 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 MANSC4A6NHS7 340 aaPredicted RBP3.22□□□□□ -1.89
SCN1A-221ENST00000641996 DDAH2O95865 285 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 ZDHHC24Q6UX98 284 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 ACBD7Q8N6N7 88 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 SIGLECL1Q8N7X8 197 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 ZDHHC16Q969W1 377 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 SMIM19Q96E16 107 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 GRAMD2BQ96HH9 432 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 OR5M11Q96RB7 305 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 VPS29Q9UBQ0 182 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 CDIPTO14735 213 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 TAAR5O14804 337 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 ZNF20P17024 532 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 SDC1P18827 310 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 KIR2DS4P43632 304 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 OR52N4Q8NGI2 321 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 OR4D5Q8NGN0 318 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 OR10G4Q8NGN3 311 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 OR52A1Q9UKL2 312 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 POLR3KQ9Y2Y1 108 aaPredicted RBP3.22□□□□□ -1.89
SCN1A-221ENST00000641996 LRP12Q9Y561 859 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 ACANP16112 2415 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 PRRC2AP48634 2157 aaKnown RBP3.22□□□□□ -1.89
SCN1A-221ENST00000641996 ODAMA1E959 279 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 B3GAT3O94766 335 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 CD99P14209 185 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 CTSKP43235 329 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 POP1Q99575 1024 aaKnown RBP3.22□□□□□ -1.89
SCN1A-221ENST00000641996 ADARB2Q9NS39 739 aaKnown RBP3.22□□□□□ -1.89
SCN1A-221ENST00000641996 AURKAIP1Q9NWT8 199 aaPredicted RBP3.22□□□□□ -1.89
SCN1A-221ENST00000641996 NEURL4Q96JN8 1562 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 LRP4O75096 1905 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 SPAARA0A1B0GVQ0 90 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 FAM187AA6NFU0 413 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 EPXP11678 715 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 HTR1FP30939 366 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 SRP14P37108 136 aaKnown RBP3.22□□□□□ -1.89
SCN1A-221ENST00000641996 TSFMP43897 325 aaKnown RBP3.22□□□□□ -1.89
SCN1A-221ENST00000641996 INSM1Q01101 510 aaPredicted RBP3.22□□□□□ -1.89
SCN1A-221ENST00000641996 DPYSL3Q14195 570 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 LYG2Q86SG7 212 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 CCDC71LQ8N9Z2 235 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 OR13H1Q8NG92 308 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 OR10G9Q8NGN4 311 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 SELENOIQ9C0D9 397 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 KIR3DX1Q9H7L2 352 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 CCDC141Q6ZP82 1450 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 PIK3C2GO75747 1445 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 CNTNAP1P78357 1384 aa3.22□□□□□ -1.89
SCN1A-221ENST00000641996 DUSP11O75319 330 aaKnown RBP3.21□□□□□ -1.89
SCN1A-221ENST00000641996 GGT1P19440 569 aa3.21□□□□□ -1.89
SCN1A-221ENST00000641996 GIFP27352 417 aa3.21□□□□□ -1.89
SCN1A-221ENST00000641996 HOXA7P31268 230 aaPredicted RBP3.21□□□□□ -1.89
SCN1A-221ENST00000641996 SLC35B1P78383 322 aa3.21□□□□□ -1.89
SCN1A-221ENST00000641996 ZNF528Q3MIS6 628 aa3.21□□□□□ -1.89
SCN1A-221ENST00000641996 OR2I1PQ8NGU4 316 aa3.21□□□□□ -1.89
SCN1A-221ENST00000641996 Q8WTZ3 238 aa3.21□□□□□ -1.89
SCN1A-221ENST00000641996 LGALS12Q96DT0 336 aa3.21□□□□□ -1.89
SCN1A-221ENST00000641996 MRPS24Q96EL2 167 aaKnown RBP3.21□□□□□ -1.89
SCN1A-221ENST00000641996 C1QTNF2Q9BXJ5 285 aa3.21□□□□□ -1.89
SCN1A-221ENST00000641996 ACTR3CQ9C0K3 210 aaPredicted RBP3.21□□□□□ -1.89
SCN1A-221ENST00000641996 SHARPINQ9H0F6 387 aa3.21□□□□□ -1.89
SCN1A-221ENST00000641996 ZFP30Q9Y2G7 519 aa3.21□□□□□ -1.89
SCN1A-221ENST00000641996 SCN4AP35499 1836 aa3.21□□□□□ -1.89
SCN1A-221ENST00000641996 RNF225M0QZC1 329 aaPredicted RBP3.21□□□□□ -1.89
SCN1A-221ENST00000641996 CCL25O15444 150 aa3.21□□□□□ -1.89
SCN1A-221ENST00000641996 KNG1P01042 644 aa3.21□□□□□ -1.89
SCN1A-221ENST00000641996 IRF2P14316 349 aa3.21□□□□□ -1.89
SCN1A-221ENST00000641996 CNR2P34972 360 aa3.21□□□□□ -1.89
SCN1A-221ENST00000641996 GABRA4P48169 554 aa3.21□□□□□ -1.89
SCN1A-221ENST00000641996 CATR1Q13166 79 aa3.21□□□□□ -1.89
SCN1A-221ENST00000641996 PAFAH1B3Q15102 231 aaKnown RBP3.21□□□□□ -1.89
SCN1A-221ENST00000641996 GPC2Q8N158 579 aa3.21□□□□□ -1.89
SCN1A-221ENST00000641996 SLC30A7Q8NEW0 376 aa3.21□□□□□ -1.89
SCN1A-221ENST00000641996 TLCD1Q96CP7 247 aa3.21□□□□□ -1.89
SCN1A-221ENST00000641996 OR52D1Q9H346 318 aa3.21□□□□□ -1.89
SCN1A-221ENST00000641996 ASIC5Q9NY37 505 aa3.21□□□□□ -1.89
SCN1A-221ENST00000641996 NCOA1Q15788 1441 aa3.21□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms