RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 GEMIN2O14893 280 aaKnown RBP4.24□□□□□ -1.73
SCN1A-220ENST00000641603 BLVRBP30043 206 aaPredicted RBP4.24□□□□□ -1.73
SCN1A-220ENST00000641603 GPR12P47775 334 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 HABP2Q14520 560 aaPredicted RBP4.24□□□□□ -1.73
SCN1A-220ENST00000641603 NFATC4Q14934 902 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 PRAMEF9Q5VWM5 478 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 TMEM99Q8N816 258 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 ACVR1CQ8NER5 493 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 C10orf35Q96D05 121 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 MRGPRX3Q96LB0 322 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 P2RY12Q9H244 342 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 GJD2Q9UKL4 321 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 VENTXO95231 258 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 SELPP16109 830 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 HNRNPA2B1P22626 353 aaKnown RBP4.24□□□□□ -1.73
SCN1A-220ENST00000641603 C2orf76Q3KRA6 126 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 NBPF12Q5TAG4 269 aaPredicted RBP4.24□□□□□ -1.73
SCN1A-220ENST00000641603 SLC48A1Q6P1K1 146 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 TMEM242Q9NWH2 141 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 PRSS50Q9UI38 385 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 NEU3Q9UQ49 428 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 OSGIN2Q9Y236 505 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 RHBDD3Q9Y3P4 386 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 A6NLC8 198 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 M0R2Z0 102 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 IRS1P35568 1242 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 AADACL3Q5VUY0 350 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 ZNF776Q68DI1 518 aaPredicted RBP4.24□□□□□ -1.73
SCN1A-220ENST00000641603 ZNF547Q8IVP9 402 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 PIANPQ8IYJ0 282 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 TMEM123Q8N131 208 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 ABHD1Q96SE0 405 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 MAGT1Q9H0U3 335 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 CXorf36Q9H7Y0 433 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 NPDC1Q9NQX5 325 aaPredicted RBP4.24□□□□□ -1.73
SCN1A-220ENST00000641603 GLOD5A6NK44 160 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 HMGN4O00479 90 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 TOX3O15405 576 aaPredicted RBP4.24□□□□□ -1.73
SCN1A-220ENST00000641603 OR7C2O60412 319 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 C1QAP02745 245 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 SELENOVP59797 346 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 CXCL9Q07325 125 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 DLX2Q07687 328 aaPredicted RBP4.24□□□□□ -1.73
SCN1A-220ENST00000641603 POMZP3Q6PJE2 187 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 HMGCLL1Q8TB92 370 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 STARD4Q96DR4 205 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 DNMT3BQ9UBC3 853 aaKnown RBP4.24□□□□□ -1.73
SCN1A-220ENST00000641603 SLC45A2Q9UMX9 530 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 TRBV5-4A0A0C4DH59 114 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 MEIS3P2A8K0S8 358 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 C11orf98E9PRG8 122 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 CXCL3P19876 107 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 PCBP3P57721 371 aaKnown RBP4.24□□□□□ -1.73
SCN1A-220ENST00000641603 PAX5Q02548 391 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 GAGE1Q13065 139 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 SHHQ15465 462 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 ZNF836Q6ZNA1 936 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 RTN4IP1Q8WWV3 396 aaPredicted RBP4.24□□□□□ -1.73
SCN1A-220ENST00000641603 SHDQ96IW2 340 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 SNX22Q96L94 193 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 HDAC8Q9BY41 377 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 CLDND1Q9NY35 253 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 HSPB7Q9UBY9 170 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 CD84Q9UIB8 345 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 PPP1R3CQ9UQK1 317 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 FAM24AA6NFZ4 105 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 GFYI3L273 518 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 J3KTA2 159 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 TAPBPO15533 448 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 LIPFP07098 398 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 CYC1P08574 325 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 AMTP48728 403 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 MORN1Q5T089 497 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 DMKNQ6E0U4 476 aaPredicted RBP4.24□□□□□ -1.73
SCN1A-220ENST00000641603 LIMS2Q7Z4I7 341 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 ADAMTS17Q8TE56 1095 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 HSPB8Q9UJY1 196 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 CA11O75493 328 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 CLDN1O95832 211 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 IFI6P09912 130 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 ZNF684Q5T5D7 378 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 TGIF2LXQ8IUE1 241 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 B4GALT7Q9UBV7 327 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 OR14J1Q9UGF5 321 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 MRPS23Q9Y3D9 190 aaKnown RBP4.23□□□□□ -1.73
SCN1A-220ENST00000641603 A6NIN4 97 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 C9J4A7 227 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 ADH4P08319 380 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 HLA-GP17693 338 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 ATP5IP56385 69 aaPredicted RBP4.23□□□□□ -1.73
SCN1A-220ENST00000641603 SFRP5Q5T4F7 317 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 ALKBH2Q6NS38 261 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 PWWP2BQ6NUJ5 590 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 CCDC74AQ96AQ1 378 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 WDR92Q96MX6 357 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 SRD5A3Q9H8P0 318 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 ATXN7L1Q9ULK2 861 aaPredicted RBP4.23□□□□□ -1.73
SCN1A-220ENST00000641603 AMDHD2Q9Y303 409 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 R4GMQ9 66 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 A0A0B4J293 547 aa4.23□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms