RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 C4orf48Q5BLP8 95 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 DEFB121Q5J5C9 76 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 HES3Q5TGS1 186 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 TFAP2EQ6VUC0 442 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 CENPVQ7Z7K6 275 aaPredicted RBP2.55□□□□□ -2
SCN1A-219ENST00000641575 TTC9BQ8N6N2 239 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 C19orf47Q8N9M1 422 aaKnown RBP2.55□□□□□ -2
SCN1A-219ENST00000641575 FAM156AQ8NDB6 213 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 RNF2Q99496 336 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 CITED1Q99966 193 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 DUSP26Q9BV47 211 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 ATXN7L1Q9ULK2 861 aaPredicted RBP2.55□□□□□ -2
SCN1A-219ENST00000641575 UBR2Q8IWV8 1755 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 ABCC6O95255 1503 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 ZNF236Q9UL36 1845 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 SIPA1L3O60292 1781 aaPredicted RBP2.55□□□□□ -2
SCN1A-219ENST00000641575 LOC389332A0A1B0GUA5 103 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 TMEM11P17152 192 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 HTR2CP28335 458 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 SOX2P48431 317 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 EMP1P54849 157 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 ERVFRD-1P60508 538 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 MAXP61244 160 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 SH3BP2P78314 561 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 RING1Q06587 406 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 RTP5Q14D33 572 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 UQCC3Q6UW78 93 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 EPGNQ6UW88 154 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 ERASQ7Z444 233 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 SPEM1Q8N4L4 309 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 FAM216AQ8WUB2 273 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 ADAMTS14Q8WXS8 1223 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 YIPF5Q969M3 257 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 CCL19Q99731 98 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 SOX7Q9BT81 388 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 ANXA10Q9UJ72 324 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 ZNF391Q9UJN7 358 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 CLEC4EQ9ULY5 219 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 TIMM9Q9Y5J7 89 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 ALPK3Q96L96 1907 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 UBR3Q6ZT12 1888 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 A0A0J9YY10 115 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 ADM5C9JUS6 153 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 CD5P06127 495 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 PRSS1P07477 247 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 BTF3P20290 206 aaKnown RBP2.55□□□□□ -2
SCN1A-219ENST00000641575 OMGP23515 440 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 SOX3P41225 446 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 SLC7A9P82251 487 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 LAPTM4AQ15012 233 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 RBMS2Q15434 407 aaKnown RBP2.55□□□□□ -2
SCN1A-219ENST00000641575 VMA21Q3ZAQ7 101 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 TEX44Q53QW1 395 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 PABPC1L2AQ5JQF8 200 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 DCAF12L1Q5VU92 463 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 RNASEKQ6P5S7 137 aaKnown RBP2.55□□□□□ -2
SCN1A-219ENST00000641575 SDR9C7Q8NEX9 313 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 OR1J1Q8NGS3 322 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 FBXO27Q8NI29 283 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 FUBP1Q96AE4 644 aaKnown RBP2.55□□□□□ -2
SCN1A-219ENST00000641575 RSG1Q9BU20 258 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 C1orf123Q9NWV4 160 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 DOK5Q9P104 306 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 LHX3Q9UBR4 397 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 NALCNQ8IZF0 1738 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 ARHGEF28Q8N1W1 1705 aaKnown RBP2.55□□□□□ -2
SCN1A-219ENST00000641575 SLIT1O75093 1534 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 FAM90A27PA6NNH2 459 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 PDGFBP01127 241 aaPredicted RBP2.55□□□□□ -2
SCN1A-219ENST00000641575 NDUFB7P17568 137 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 PPIAP62937 165 aaKnown RBP2.55□□□□□ -2
SCN1A-219ENST00000641575 SHHQ15465 462 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 TCTN1Q2MV58 587 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 MORN1Q5T089 497 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 H3F3CQ6NXT2 135 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 SLC35F2Q8IXU6 374 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 OR4K2Q8NGD2 314 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 SCARB1Q8WTV0 552 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 PSMG2Q969U7 264 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 RAB37Q96AX2 223 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 ZMYND19Q96E35 227 aaPredicted RBP2.55□□□□□ -2
SCN1A-219ENST00000641575 LYSMD1Q96S90 227 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 NMES1Q9C002 83 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 C20orf27Q9GZN8 174 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 GPR173Q9NS66 373 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 SMOXQ9NWM0 555 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 SLC27A5Q9Y2P5 690 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 RHBDD3Q9Y3P4 386 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 RGPD8O14715 1765 aaPredicted RBP2.54□□□□□ -2
SCN1A-219ENST00000641575 LTBP3Q9NS15 1303 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 TULP4Q9NRJ4 1543 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 PPM1DO15297 605 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 CRXO43186 299 aaPredicted RBP2.54□□□□□ -2
SCN1A-219ENST00000641575 HRASP01112 189 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 KDELR2P33947 212 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 TRHRP34981 398 aaPredicted RBP2.54□□□□□ -2
SCN1A-219ENST00000641575 KIR2DS2P43631 304 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 TNFRSF17Q02223 184 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 FABP9Q0Z7S8 132 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 ZNF266Q14584 549 aa2.54□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms