RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 PSMB10P40306 273 aa13.42□□□□□ -0.26
CLN3-246ENST00000636228 TPTEP56180 551 aa13.42□□□□□ -0.26
CLN3-246ENST00000636228 ZNF92Q03936 586 aa13.42□□□□□ -0.26
CLN3-246ENST00000636228 POU4F2Q12837 409 aa13.42□□□□□ -0.26
CLN3-246ENST00000636228 ECH1Q13011 328 aa13.42□□□□□ -0.26
CLN3-246ENST00000636228 SNAI3Q3KNW1 292 aa13.42□□□□□ -0.26
CLN3-246ENST00000636228 FIP1L1Q6UN15 594 aaKnown RBP13.42□□□□□ -0.26
CLN3-246ENST00000636228 LYPD4Q6UWN0 246 aa13.42□□□□□ -0.26
CLN3-246ENST00000636228 MRPL21Q7Z2W9 205 aaKnown RBP13.42□□□□□ -0.26
CLN3-246ENST00000636228 ZBTB46Q86UZ6 589 aa13.42□□□□□ -0.26
CLN3-246ENST00000636228 PYURFQ96I23 114 aa13.42□□□□□ -0.26
CLN3-246ENST00000636228 RNF7Q9UBF6 113 aa13.42□□□□□ -0.26
CLN3-246ENST00000636228 CD300LBA8K4G0 201 aa13.41□□□□□ -0.26
CLN3-246ENST00000636228 M0R135 149 aa13.41□□□□□ -0.26
CLN3-246ENST00000636228 PHYHO14832 338 aa13.41□□□□□ -0.26
CLN3-246ENST00000636228 GMNNO75496 209 aa13.41□□□□□ -0.26
CLN3-246ENST00000636228 SEMG1P04279 462 aa13.41□□□□□ -0.26
CLN3-246ENST00000636228 PSKH1P11801 424 aa13.41□□□□□ -0.26
CLN3-246ENST00000636228 RELBQ01201 579 aa13.41□□□□□ -0.26
CLN3-246ENST00000636228 KHDRBS1Q07666 443 aaKnown RBP eCLIP13.41□□□□□ -0.26
CLN3-246ENST00000636228 GPR157Q5UAW9 335 aa13.41□□□□□ -0.26
CLN3-246ENST00000636228 Q6YL49 198 aa13.41□□□□□ -0.26
CLN3-246ENST00000636228 LNX2Q8N448 690 aa13.41□□□□□ -0.26
CLN3-246ENST00000636228 CELF2-AS1Q8N7Q2 184 aa13.41□□□□□ -0.26
CLN3-246ENST00000636228 CYB561A3Q8NBI2 242 aa13.41□□□□□ -0.26
CLN3-246ENST00000636228 ZNF799Q96GE5 643 aa13.41□□□□□ -0.26
CLN3-246ENST00000636228 CHIAQ9BZP6 476 aa13.41□□□□□ -0.26
CLN3-246ENST00000636228 SLITRK2Q9H156 845 aa13.41□□□□□ -0.26
CLN3-246ENST00000636228 PRDM13Q9H4Q3 707 aa13.41□□□□□ -0.26
CLN3-246ENST00000636228 EGLN3Q9H6Z9 239 aa13.41□□□□□ -0.26
CLN3-246ENST00000636228 SMURF1Q9HCE7 757 aa13.41□□□□□ -0.26
CLN3-246ENST00000636228 N6AMT1Q9Y5N5 214 aa13.41□□□□□ -0.26
CLN3-246ENST00000636228 CENPVL3A0A0U1RRI6 287 aa13.4□□□□□ -0.26
CLN3-246ENST00000636228 SRRM5B3KS81 715 aa13.4□□□□□ -0.26
CLN3-246ENST00000636228 LGALS8O00214 317 aa13.4□□□□□ -0.26
CLN3-246ENST00000636228 ADAM20O43506 726 aa13.4□□□□□ -0.26
CLN3-246ENST00000636228 ENSAO43768 121 aaKnown RBP13.4□□□□□ -0.26
CLN3-246ENST00000636228 TOX4O94842 621 aa13.4□□□□□ -0.26
CLN3-246ENST00000636228 GRPP07492 148 aa13.4□□□□□ -0.26
CLN3-246ENST00000636228 CFHR2P36980 270 aa13.4□□□□□ -0.26
CLN3-246ENST00000636228 SMIM11AP58511 58 aa13.4□□□□□ -0.26
CLN3-246ENST00000636228 OR8B8Q15620 311 aa13.4□□□□□ -0.26
CLN3-246ENST00000636228 PDLIM3Q53GG5 364 aaPredicted RBP13.4□□□□□ -0.26
CLN3-246ENST00000636228 ZNF826PQ6ZT77 177 aa13.4□□□□□ -0.26
CLN3-246ENST00000636228 OR51L1Q8NGJ5 315 aa13.4□□□□□ -0.26
CLN3-246ENST00000636228 ERGIC1Q969X5 290 aa13.4□□□□□ -0.26
CLN3-246ENST00000636228 TBX15Q96SF7 602 aa13.4□□□□□ -0.26
CLN3-246ENST00000636228 ELAC2Q9BQ52 826 aaKnown RBP13.4□□□□□ -0.26
CLN3-246ENST00000636228 ADAT1Q9BUB4 502 aaKnown RBP13.4□□□□□ -0.26
CLN3-246ENST00000636228 GORASP2Q9H8Y8 452 aa13.4□□□□□ -0.26
CLN3-246ENST00000636228 FN3KRPQ9HA64 309 aa13.4□□□□□ -0.26
CLN3-246ENST00000636228 SPAG4Q9NPE6 437 aa13.4□□□□□ -0.26
CLN3-246ENST00000636228 MED4Q9NPJ6 270 aa13.4□□□□□ -0.26
CLN3-246ENST00000636228 C1orf123Q9NWV4 160 aa13.4□□□□□ -0.26
CLN3-246ENST00000636228 PDP1Q9P0J1 537 aaPredicted RBP13.4□□□□□ -0.26
CLN3-246ENST00000636228 ERVK-18Q9QC07 812 aa13.4□□□□□ -0.26
CLN3-246ENST00000636228 CMYA5Q8N3K9 4069 aa13.39□□□□□ -0.27
CLN3-246ENST00000636228 GGT3PA6NGU5 568 aa13.39□□□□□ -0.27
CLN3-246ENST00000636228 ZNF879B4DU55 563 aa13.39□□□□□ -0.27
CLN3-246ENST00000636228 FCN3O75636 299 aa13.39□□□□□ -0.27
CLN3-246ENST00000636228 KNG1P01042 644 aa13.39□□□□□ -0.27
CLN3-246ENST00000636228 GYPAP02724 150 aa13.39□□□□□ -0.27
CLN3-246ENST00000636228 CRYBA1P05813 215 aa13.39□□□□□ -0.27
CLN3-246ENST00000636228 MELTFP08582 738 aa13.39□□□□□ -0.27
CLN3-246ENST00000636228 SLC2A1P11166 492 aa13.39□□□□□ -0.27
CLN3-246ENST00000636228 MMP9P14780 707 aa13.39□□□□□ -0.27
CLN3-246ENST00000636228 ZNF823P16415 610 aa13.39□□□□□ -0.27
CLN3-246ENST00000636228 RRM2P31350 389 aa13.39□□□□□ -0.27
CLN3-246ENST00000636228 GSSP48637 474 aa13.39□□□□□ -0.27
CLN3-246ENST00000636228 RAG2P55895 527 aa13.39□□□□□ -0.27
CLN3-246ENST00000636228 MIDNQ504T8 468 aa13.39□□□□□ -0.27
CLN3-246ENST00000636228 GLYATL3Q5SZD4 288 aa13.39□□□□□ -0.27
CLN3-246ENST00000636228 PDZD9Q8IXQ8 264 aa13.39□□□□□ -0.27
CLN3-246ENST00000636228 GNPDA2Q8TDQ7 276 aa13.39□□□□□ -0.27
CLN3-246ENST00000636228 SPTSSAQ969W0 71 aa13.39□□□□□ -0.27
CLN3-246ENST00000636228 CMTM5Q96DZ9 223 aa13.39□□□□□ -0.27
CLN3-246ENST00000636228 MYLK2Q9H1R3 596 aa13.39□□□□□ -0.27
CLN3-246ENST00000636228 C1RLQ9NZP8 487 aa13.39□□□□□ -0.27
CLN3-246ENST00000636228 MMP24Q9Y5R2 645 aa13.39□□□□□ -0.27
CLN3-246ENST00000636228 IGHV3OR15-7A0A075B7D8 119 aa13.38□□□□□ -0.27
CLN3-246ENST00000636228 TNFRSF13BO14836 293 aaPredicted RBP13.38□□□□□ -0.27
CLN3-246ENST00000636228 IDH3BO43837 385 aa13.38□□□□□ -0.27
CLN3-246ENST00000636228 GMDSO60547 372 aa13.38□□□□□ -0.27
CLN3-246ENST00000636228 PRKXP51817 358 aa13.38□□□□□ -0.27
CLN3-246ENST00000636228 ARF6P62330 175 aa13.38□□□□□ -0.27
CLN3-246ENST00000636228 ELF3P78545 371 aaPredicted RBP13.38□□□□□ -0.27
CLN3-246ENST00000636228 CD276Q5ZPR3 534 aa13.38□□□□□ -0.27
CLN3-246ENST00000636228 PGBD2Q6P3X8 592 aa13.38□□□□□ -0.27
CLN3-246ENST00000636228 ZNF620Q6ZNG0 422 aa13.38□□□□□ -0.27
CLN3-246ENST00000636228 C17orf107Q6ZR85 190 aa13.38□□□□□ -0.27
CLN3-246ENST00000636228 DCXRQ7Z4W1 244 aa13.38□□□□□ -0.27
CLN3-246ENST00000636228 FGFRL1Q8N441 504 aa13.38□□□□□ -0.27
CLN3-246ENST00000636228 PROKR2Q8NFJ6 384 aa13.38□□□□□ -0.27
CLN3-246ENST00000636228 WFDC12Q8WWY7 111 aa13.38□□□□□ -0.27
CLN3-246ENST00000636228 LHX4Q969G2 390 aa13.38□□□□□ -0.27
CLN3-246ENST00000636228 WDFY2Q96P53 400 aa13.38□□□□□ -0.27
CLN3-246ENST00000636228 DDOQ99489 341 aa13.38□□□□□ -0.27
CLN3-246ENST00000636228 BEX1Q9HBH7 125 aa13.38□□□□□ -0.27
CLN3-246ENST00000636228 NOX4Q9NPH5 578 aa13.38□□□□□ -0.27
CLN3-246ENST00000636228 OOEPA6NGQ2 149 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms