RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 TPTEP56180 551 aa15.4■□□□□ 0.06
CLN3-241ENST00000635861 SPIBQ01892 262 aa15.4■□□□□ 0.06
CLN3-241ENST00000635861 TRAP1Q12931 704 aaKnown RBP15.4■□□□□ 0.06
CLN3-241ENST00000635861 CORO6Q6QEF8 472 aa15.4■□□□□ 0.06
CLN3-241ENST00000635861 CFAP77Q6ZQR2 320 aa15.4■□□□□ 0.06
CLN3-241ENST00000635861 PGAP1Q75T13 922 aa15.4■□□□□ 0.06
CLN3-241ENST00000635861 FAM86B1Q8N7N1 296 aa15.4■□□□□ 0.06
CLN3-241ENST00000635861 C1orf147Q96MC9 270 aaPredicted RBP15.4■□□□□ 0.06
CLN3-241ENST00000635861 ZNF48Q96MX3 618 aaPredicted RBP15.4■□□□□ 0.06
CLN3-241ENST00000635861 CLN8Q9UBY8 286 aa15.4■□□□□ 0.06
CLN3-241ENST00000635861 PRPF19Q9UMS4 504 aaKnown RBP15.4■□□□□ 0.06
CLN3-241ENST00000635861 F5H5K5 113 aa15.39■□□□□ 0.05
CLN3-241ENST00000635861 TMPRSS2O15393 492 aa15.39■□□□□ 0.05
CLN3-241ENST00000635861 GSC2O15499 205 aa15.39■□□□□ 0.05
CLN3-241ENST00000635861 FKBP6O75344 327 aa15.39■□□□□ 0.05
CLN3-241ENST00000635861 GGT2P36268 569 aa15.39■□□□□ 0.05
CLN3-241ENST00000635861 GSSP48637 474 aa15.39■□□□□ 0.05
CLN3-241ENST00000635861 KPNB1Q14974 876 aaKnown RBP15.39■□□□□ 0.05
CLN3-241ENST00000635861 KCNJ8Q15842 424 aa15.39■□□□□ 0.05
CLN3-241ENST00000635861 SPATS1Q496A3 300 aa15.39■□□□□ 0.05
CLN3-241ENST00000635861 ZSCAN2Q7Z7L9 614 aaPredicted RBP15.39■□□□□ 0.05
CLN3-241ENST00000635861 BCL6BQ8N143 479 aaPredicted RBP15.39■□□□□ 0.05
CLN3-241ENST00000635861 PLPP7Q8NBV4 271 aa15.39■□□□□ 0.05
CLN3-241ENST00000635861 OR4K13Q8NH42 304 aa15.39■□□□□ 0.05
CLN3-241ENST00000635861 DNAJC9Q8WXX5 260 aa15.39■□□□□ 0.05
CLN3-241ENST00000635861 SPTSSAQ969W0 71 aa15.39■□□□□ 0.05
CLN3-241ENST00000635861 CDRT15Q96T59 188 aa15.39■□□□□ 0.05
CLN3-241ENST00000635861 CADM1Q9BY67 442 aaKnown RBP15.39■□□□□ 0.05
CLN3-241ENST00000635861 PNRC2Q9NPJ4 139 aaKnown RBP15.39■□□□□ 0.05
CLN3-241ENST00000635861 CD300AQ9UGN4 299 aa15.39■□□□□ 0.05
CLN3-241ENST00000635861 TMCC3Q9ULS5 477 aa15.39■□□□□ 0.05
CLN3-241ENST00000635861 HLA-DQA2P01906 255 aa15.38■□□□□ 0.05
CLN3-241ENST00000635861 LCATP04180 440 aa15.38■□□□□ 0.05
CLN3-241ENST00000635861 FABP3P05413 133 aa15.38■□□□□ 0.05
CLN3-241ENST00000635861 IGHV4-38-2P0DP08 117 aa15.38■□□□□ 0.05
CLN3-241ENST00000635861 RBMXP38159 391 aaKnown RBP15.38■□□□□ 0.05
CLN3-241ENST00000635861 RAD23AP54725 363 aa15.38■□□□□ 0.05
CLN3-241ENST00000635861 SLC34A1Q06495 639 aa15.38■□□□□ 0.05
CLN3-241ENST00000635861 TSPAN31Q12999 210 aa15.38■□□□□ 0.05
CLN3-241ENST00000635861 MAB21L1Q13394 359 aa15.38■□□□□ 0.05
CLN3-241ENST00000635861 ZNF620Q6ZNG0 422 aa15.38■□□□□ 0.05
CLN3-241ENST00000635861 LINC00346Q8IVM7 164 aa15.38■□□□□ 0.05
CLN3-241ENST00000635861 LINC00471Q8N535 108 aa15.38■□□□□ 0.05
CLN3-241ENST00000635861 GNPDA2Q8TDQ7 276 aa15.38■□□□□ 0.05
CLN3-241ENST00000635861 NUDT16L1Q9BRJ7 211 aaKnown RBP15.38■□□□□ 0.05
CLN3-241ENST00000635861 PRDM13Q9H4Q3 707 aa15.38■□□□□ 0.05
CLN3-241ENST00000635861 WDR76Q9H967 626 aa15.38■□□□□ 0.05
CLN3-241ENST00000635861 TRIM36Q9NQ86 728 aa15.38■□□□□ 0.05
CLN3-241ENST00000635861 TRAV40A0A0B4J280 105 aa15.37■□□□□ 0.05
CLN3-241ENST00000635861 OR6C68A6NDL8 312 aa15.37■□□□□ 0.05
CLN3-241ENST00000635861 M0R135 149 aa15.37■□□□□ 0.05
CLN3-241ENST00000635861 GMDSO60547 372 aa15.37■□□□□ 0.05
CLN3-241ENST00000635861 PTBP3O95758 552 aaKnown RBP15.37■□□□□ 0.05
CLN3-241ENST00000635861 HLA-DPB1P04440 258 aa15.37■□□□□ 0.05
CLN3-241ENST00000635861 ZNF823P16415 610 aa15.37■□□□□ 0.05
CLN3-241ENST00000635861 PSMB10P40306 273 aa15.37■□□□□ 0.05
CLN3-241ENST00000635861 SLC9A3R2Q15599 337 aa15.37■□□□□ 0.05
CLN3-241ENST00000635861 SAMD4BQ5PRF9 694 aaKnown RBP15.37■□□□□ 0.05
CLN3-241ENST00000635861 WDR25Q64LD2 544 aaPredicted RBP15.37■□□□□ 0.05
CLN3-241ENST00000635861 MRPL21Q7Z2W9 205 aaKnown RBP15.37■□□□□ 0.05
CLN3-241ENST00000635861 SDR9C7Q8NEX9 313 aa15.37■□□□□ 0.05
CLN3-241ENST00000635861 OR52L1Q8NGH7 329 aa15.37■□□□□ 0.05
CLN3-241ENST00000635861 OR4C15Q8NGM1 316 aa15.37■□□□□ 0.05
CLN3-241ENST00000635861 SPRYD4Q8WW59 207 aaPredicted RBP15.37■□□□□ 0.05
CLN3-241ENST00000635861 SLCO4A1Q96BD0 722 aa15.37■□□□□ 0.05
CLN3-241ENST00000635861 ZNF799Q96GE5 643 aa15.37■□□□□ 0.05
CLN3-241ENST00000635861 NSMCE2Q96MF7 247 aa15.37■□□□□ 0.05
CLN3-241ENST00000635861 THTPAQ9BU02 230 aa15.37■□□□□ 0.05
CLN3-241ENST00000635861 SLITRK2Q9H156 845 aa15.37■□□□□ 0.05
CLN3-241ENST00000635861 OPA3Q9H6K4 179 aa15.37■□□□□ 0.05
CLN3-241ENST00000635861 IL1RAPQ9NPH3 570 aa15.37■□□□□ 0.05
CLN3-241ENST00000635861 ENSAO43768 121 aaKnown RBP15.36■□□□□ 0.05
CLN3-241ENST00000635861 KRT36O76013 467 aa15.36■□□□□ 0.05
CLN3-241ENST00000635861 ZNF205O95201 554 aa15.36■□□□□ 0.05
CLN3-241ENST00000635861 LIPFP07098 398 aa15.36■□□□□ 0.05
CLN3-241ENST00000635861 RRM2P31350 389 aa15.36■□□□□ 0.05
CLN3-241ENST00000635861 OTX1P32242 354 aaPredicted RBP15.36■□□□□ 0.05
CLN3-241ENST00000635861 PMELP40967 661 aa15.36■□□□□ 0.05
CLN3-241ENST00000635861 KHDRBS1Q07666 443 aaKnown RBP eCLIP15.36■□□□□ 0.05
CLN3-241ENST00000635861 C11orf91Q3C1V1 193 aa15.36■□□□□ 0.05
CLN3-241ENST00000635861 CLEC12AQ5QGZ9 265 aa15.36■□□□□ 0.05
CLN3-241ENST00000635861 CD276Q5ZPR3 534 aa15.36■□□□□ 0.05
CLN3-241ENST00000635861 RNF148Q8N7C7 305 aa15.36■□□□□ 0.05
CLN3-241ENST00000635861 SPERTQ8NA61 448 aa15.36■□□□□ 0.05
CLN3-241ENST00000635861 DUX5Q96PT3 197 aa15.36■□□□□ 0.05
CLN3-241ENST00000635861 NR1H4Q96RI1 486 aaPredicted RBP15.36■□□□□ 0.05
CLN3-241ENST00000635861 UNKLQ9H9P5 680 aaKnown RBP15.36■□□□□ 0.05
CLN3-241ENST00000635861 FN3KRPQ9HA64 309 aa15.36■□□□□ 0.05
CLN3-241ENST00000635861 MRPL22Q9NWU5 206 aaKnown RBP15.36■□□□□ 0.05
CLN3-241ENST00000635861 V9GYQ6 96 aa15.36■□□□□ 0.05
CLN3-241ENST00000635861 NDUFA2O43678 99 aa15.35■□□□□ 0.05
CLN3-241ENST00000635861 FAM20BO75063 409 aa15.35■□□□□ 0.05
CLN3-241ENST00000635861 MZT1Q08AG7 82 aa15.35■□□□□ 0.05
CLN3-241ENST00000635861 OR8G1Q15617 311 aa15.35■□□□□ 0.05
CLN3-241ENST00000635861 DRAM2Q6UX65 266 aa15.35■□□□□ 0.05
CLN3-241ENST00000635861 OR2T4Q8NH00 348 aa15.35■□□□□ 0.05
CLN3-241ENST00000635861 UTP4Q969X6 686 aaKnown RBP15.35■□□□□ 0.05
CLN3-241ENST00000635861 MAP6Q96JE9 813 aa15.35■□□□□ 0.05
CLN3-241ENST00000635861 CLPTM1LQ96KA5 538 aa15.35■□□□□ 0.05
CLN3-241ENST00000635861 MRPL15Q9P015 296 aaKnown RBP15.35■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms