RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 ATAD3CQ5T2N8 411 aa13.88□□□□□ -0.19
CPSF1-213ENST00000620219 DRAXINQ8NBI3 349 aaPredicted RBP13.88□□□□□ -0.19
CPSF1-213ENST00000620219 CHIAQ9BZP6 476 aa13.88□□□□□ -0.19
CPSF1-213ENST00000620219 CADP27708 2225 aa13.88□□□□□ -0.19
CPSF1-213ENST00000620219 DLL1O00548 723 aa13.88□□□□□ -0.19
CPSF1-213ENST00000620219 LMX1BO60663 402 aa13.88□□□□□ -0.19
CPSF1-213ENST00000620219 RAF1P04049 648 aa13.88□□□□□ -0.19
CPSF1-213ENST00000620219 OR5AS1Q8N127 324 aa13.88□□□□□ -0.19
CPSF1-213ENST00000620219 RGP1Q92546 391 aaPredicted RBP13.88□□□□□ -0.19
CPSF1-213ENST00000620219 SORCS2Q96PQ0 1159 aa13.88□□□□□ -0.19
CPSF1-213ENST00000620219 EIF3KQ9UBQ5 218 aaKnown RBP13.88□□□□□ -0.19
CPSF1-213ENST00000620219 A6NLC8 198 aa13.88□□□□□ -0.19
CPSF1-213ENST00000620219 C2orf76Q3KRA6 126 aa13.88□□□□□ -0.19
CPSF1-213ENST00000620219 IL17RDQ8NFM7 739 aa13.88□□□□□ -0.19
CPSF1-213ENST00000620219 WDFY2Q96P53 400 aa13.88□□□□□ -0.19
CPSF1-213ENST00000620219 MED28Q9H204 178 aa13.88□□□□□ -0.19
CPSF1-213ENST00000620219 KLK13Q9UKR3 277 aa13.88□□□□□ -0.19
CPSF1-213ENST00000620219 SPATA2Q9UM82 520 aa13.88□□□□□ -0.19
CPSF1-213ENST00000620219 MRPS28Q9Y2Q9 187 aaKnown RBP13.88□□□□□ -0.19
CPSF1-213ENST00000620219 YES1P07947 543 aa13.87□□□□□ -0.19
CPSF1-213ENST00000620219 CDK2P24941 298 aa13.87□□□□□ -0.19
CPSF1-213ENST00000620219 KIR2DL3P43628 341 aa13.87□□□□□ -0.19
CPSF1-213ENST00000620219 PSMA6P60900 246 aaKnown RBP13.87□□□□□ -0.19
CPSF1-213ENST00000620219 SIAH3Q8IW03 269 aa13.87□□□□□ -0.19
CPSF1-213ENST00000620219 OR1M1Q8NGA1 313 aa13.87□□□□□ -0.19
CPSF1-213ENST00000620219 OR8B12Q8NGG6 310 aa13.87□□□□□ -0.19
CPSF1-213ENST00000620219 URM1Q9BTM9 101 aaKnown RBP13.87□□□□□ -0.19
CPSF1-213ENST00000620219 SELENOIQ9C0D9 397 aa13.87□□□□□ -0.19
CPSF1-213ENST00000620219 OR10A4Q9H209 315 aa13.87□□□□□ -0.19
CPSF1-213ENST00000620219 LHFPL6Q9Y693 200 aa13.87□□□□□ -0.19
CPSF1-213ENST00000620219 ANKRD11Q6UB99 2663 aaPredicted RBP13.87□□□□□ -0.19
CPSF1-213ENST00000620219 TLN1Q9Y490 2541 aaKnown RBP13.87□□□□□ -0.19
CPSF1-213ENST00000620219 GLIPR1L1Q6UWM5 242 aa13.87□□□□□ -0.19
CPSF1-213ENST00000620219 PIP4P1Q86T03 277 aa13.87□□□□□ -0.19
CPSF1-213ENST00000620219 RNF133Q8WVZ7 376 aa13.87□□□□□ -0.19
CPSF1-213ENST00000620219 EXTL1Q92935 676 aa13.87□□□□□ -0.19
CPSF1-213ENST00000620219 SF3B5Q9BWJ5 86 aaKnown RBP13.87□□□□□ -0.19
CPSF1-213ENST00000620219 AKAP6Q13023 2319 aa13.87□□□□□ -0.19
CPSF1-213ENST00000620219 ATRXP46100 2492 aa13.87□□□□□ -0.19
CPSF1-213ENST00000620219 TRAV1-2A0A0B4J238 106 aa13.87□□□□□ -0.19
CPSF1-213ENST00000620219 FAM25EA8MYX2 175 aa13.87□□□□□ -0.19
CPSF1-213ENST00000620219 CDNFQ49AH0 187 aa13.87□□□□□ -0.19
CPSF1-213ENST00000620219 OR1F12Q8NHA8 337 aa13.87□□□□□ -0.19
CPSF1-213ENST00000620219 DDOQ99489 341 aa13.87□□□□□ -0.19
CPSF1-213ENST00000620219 KCNJ15Q99712 375 aa13.87□□□□□ -0.19
CPSF1-213ENST00000620219 KLK11Q9UBX7 282 aa13.87□□□□□ -0.19
CPSF1-213ENST00000620219 CACNG2Q9Y698 323 aa13.87□□□□□ -0.19
CPSF1-213ENST00000620219 IGLV3-32A0A0A0MS00 114 aa13.86□□□□□ -0.19
CPSF1-213ENST00000620219 A0A1W2PNV4 684 aa13.86□□□□□ -0.19
CPSF1-213ENST00000620219 GDNFP39905 211 aa13.86□□□□□ -0.19
CPSF1-213ENST00000620219 TSC22D1Q15714 1073 aa13.86□□□□□ -0.19
CPSF1-213ENST00000620219 CISD2Q8N5K1 135 aaKnown RBP13.86□□□□□ -0.19
CPSF1-213ENST00000620219 DVL3Q92997 716 aaPredicted RBP13.86□□□□□ -0.19
CPSF1-213ENST00000620219 ZC3HAV1LQ96H79 300 aaKnown RBP13.86□□□□□ -0.19
CPSF1-213ENST00000620219 CYSLTR2Q9NS75 346 aa13.86□□□□□ -0.19
CPSF1-213ENST00000620219 TPD52L2O43399 206 aaKnown RBP13.86□□□□□ -0.19
CPSF1-213ENST00000620219 NME2P1O60361 137 aa13.86□□□□□ -0.19
CPSF1-213ENST00000620219 TMIGD3P0DMS9 266 aaPredicted RBP13.86□□□□□ -0.19
CPSF1-213ENST00000620219 NME2P22392 152 aa13.86□□□□□ -0.19
CPSF1-213ENST00000620219 SLC25A53Q5H9E4 307 aa13.86□□□□□ -0.19
CPSF1-213ENST00000620219 PGAP1Q75T13 922 aa13.86□□□□□ -0.19
CPSF1-213ENST00000620219 DOK3Q7L591 496 aa13.86□□□□□ -0.19
CPSF1-213ENST00000620219 ZNF584Q8IVC4 421 aa13.86□□□□□ -0.19
CPSF1-213ENST00000620219 PROK2Q9HC23 129 aa13.86□□□□□ -0.19
CPSF1-213ENST00000620219 CYB5R1Q9UHQ9 305 aa13.86□□□□□ -0.19
CPSF1-213ENST00000620219 UGT2A1Q9Y4X1 527 aa13.86□□□□□ -0.19
CPSF1-213ENST00000620219 TNFSF10P50591 281 aa13.86□□□□□ -0.19
CPSF1-213ENST00000620219 C11orf91Q3C1V1 193 aa13.86□□□□□ -0.19
CPSF1-213ENST00000620219 AGAP6Q5VW22 663 aa13.86□□□□□ -0.19
CPSF1-213ENST00000620219 ANKRD16Q6P6B7 361 aa13.86□□□□□ -0.19
CPSF1-213ENST00000620219 SLC22A24Q8N4F4 322 aa13.86□□□□□ -0.19
CPSF1-213ENST00000620219 OR52I2Q8NH67 350 aa13.86□□□□□ -0.19
CPSF1-213ENST00000620219 GPR35Q9HC97 309 aa13.86□□□□□ -0.19
CPSF1-213ENST00000620219 RPS11P62280 158 aaKnown RBP eCLIP13.86□□□□□ -0.19
CPSF1-213ENST00000620219 GPR176Q14439 515 aa13.86□□□□□ -0.19
CPSF1-213ENST00000620219 PHYHD1Q5SRE7 291 aa13.86□□□□□ -0.19
CPSF1-213ENST00000620219 REEP6Q96HR9 211 aa13.86□□□□□ -0.19
CPSF1-213ENST00000620219 RBFOX1Q9NWB1 397 aaKnown RBP13.86□□□□□ -0.19
CPSF1-213ENST00000620219 FAM172BPA6NC97 362 aa13.85□□□□□ -0.19
CPSF1-213ENST00000620219 UBL3O95164 117 aa13.85□□□□□ -0.19
CPSF1-213ENST00000620219 C4orf46Q504U0 113 aa13.85□□□□□ -0.19
CPSF1-213ENST00000620219 SLC25A47Q6Q0C1 308 aa13.85□□□□□ -0.19
CPSF1-213ENST00000620219 WDFY1Q8IWB7 410 aa13.85□□□□□ -0.19
CPSF1-213ENST00000620219 BOLLQ8N9W6 283 aaKnown RBP13.85□□□□□ -0.19
CPSF1-213ENST00000620219 SEMA6DQ8NFY4 1073 aa13.85□□□□□ -0.19
CPSF1-213ENST00000620219 OR6M1Q8NGM8 313 aa13.85□□□□□ -0.19
CPSF1-213ENST00000620219 ASB5Q8WWX0 329 aa13.85□□□□□ -0.19
CPSF1-213ENST00000620219 HAS2Q92819 552 aa13.85□□□□□ -0.19
CPSF1-213ENST00000620219 CST11Q9H112 138 aa13.85□□□□□ -0.19
CPSF1-213ENST00000620219 PTPRQQ9UMZ3 2332 aa13.85□□□□□ -0.19
CPSF1-213ENST00000620219 RHBDD3Q9Y3P4 386 aa13.85□□□□□ -0.19
CPSF1-213ENST00000620219 UBE2QL1A1L167 161 aa13.85□□□□□ -0.19
CPSF1-213ENST00000620219 PMPCAQ10713 525 aa13.85□□□□□ -0.19
CPSF1-213ENST00000620219 HIKESHIQ53FT3 197 aa13.85□□□□□ -0.19
CPSF1-213ENST00000620219 FREM1Q5H8C1 2179 aa13.85□□□□□ -0.19
CPSF1-213ENST00000620219 PLA2G10O15496 165 aa13.85□□□□□ -0.19
CPSF1-213ENST00000620219 IL2RAP01589 272 aa13.85□□□□□ -0.19
CPSF1-213ENST00000620219 PTH2RP49190 550 aa13.85□□□□□ -0.19
CPSF1-213ENST00000620219 CXADRP78310 365 aa13.85□□□□□ -0.19
CPSF1-213ENST00000620219 CATSPERDQ86XM0 798 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms