RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 EFNB3Q15768 340 aa16.91■□□□□ 0.3
UPF3A-211ENST00000618700 MST1LQ2TV78 715 aa16.91■□□□□ 0.3
UPF3A-211ENST00000618700 TMEM255AQ5JRV8 349 aa16.91■□□□□ 0.3
UPF3A-211ENST00000618700 RNLSQ5VYX0 342 aa16.91■□□□□ 0.3
UPF3A-211ENST00000618700 C11orf71Q6IPW1 123 aa16.91■□□□□ 0.3
UPF3A-211ENST00000618700 MUC15Q8N387 334 aa16.91■□□□□ 0.3
UPF3A-211ENST00000618700 KLF14Q8TD94 323 aaPredicted RBP16.91■□□□□ 0.3
UPF3A-211ENST00000618700 RORBQ92753 470 aa16.91■□□□□ 0.3
UPF3A-211ENST00000618700 MYDGFQ969H8 173 aa16.91■□□□□ 0.3
UPF3A-211ENST00000618700 PELI1Q96FA3 418 aa16.91■□□□□ 0.3
UPF3A-211ENST00000618700 ISG20L2Q9H9L3 353 aaKnown RBP16.91■□□□□ 0.3
UPF3A-211ENST00000618700 BRD7Q9NPI1 651 aa16.91■□□□□ 0.3
UPF3A-211ENST00000618700 FAIMQ9NVQ4 179 aa16.91■□□□□ 0.3
UPF3A-211ENST00000618700 PTTG3PQ9NZH4 202 aa16.91■□□□□ 0.3
UPF3A-211ENST00000618700 NUFIP1Q9UHK0 495 aaKnown RBP16.91■□□□□ 0.3
UPF3A-211ENST00000618700 BLOC1S6Q9UL45 172 aa16.91■□□□□ 0.3
UPF3A-211ENST00000618700 FZR1Q9UM11 496 aa16.91■□□□□ 0.3
UPF3A-211ENST00000618700 CAB39Q9Y376 341 aaPredicted RBP16.91■□□□□ 0.3
UPF3A-211ENST00000618700 SPG11Q96JI7 2443 aa16.9■□□□□ 0.3
UPF3A-211ENST00000618700 TMEM129A0AVI4 362 aa16.9■□□□□ 0.3
UPF3A-211ENST00000618700 J3QLW9 94 aa16.9■□□□□ 0.3
UPF3A-211ENST00000618700 SOD3P08294 240 aa16.9■□□□□ 0.3
UPF3A-211ENST00000618700 TACSTD2P09758 323 aa16.9■□□□□ 0.3
UPF3A-211ENST00000618700 ZNF19P17023 458 aa16.9■□□□□ 0.3
UPF3A-211ENST00000618700 EVX1P49640 407 aa16.9■□□□□ 0.3
UPF3A-211ENST00000618700 MALLQ13021 153 aa16.9■□□□□ 0.3
UPF3A-211ENST00000618700 ZNF718Q3SXZ3 478 aa16.9■□□□□ 0.3
UPF3A-211ENST00000618700 GLYATL3Q5SZD4 288 aa16.9■□□□□ 0.3
UPF3A-211ENST00000618700 PAMR1Q6UXH9 720 aa16.9■□□□□ 0.3
UPF3A-211ENST00000618700 LRP11Q86VZ4 500 aa16.9■□□□□ 0.3
UPF3A-211ENST00000618700 FBXL14Q8N1E6 418 aa16.9■□□□□ 0.3
UPF3A-211ENST00000618700 KLHL36Q8N4N3 616 aa16.9■□□□□ 0.3
UPF3A-211ENST00000618700 ZNF485Q8NCK3 441 aa16.9■□□□□ 0.3
UPF3A-211ENST00000618700 OR8B12Q8NGG6 310 aa16.9■□□□□ 0.3
UPF3A-211ENST00000618700 OR52N1Q8NH53 320 aa16.9■□□□□ 0.3
UPF3A-211ENST00000618700 SYNPRQ8TBG9 265 aa16.9■□□□□ 0.3
UPF3A-211ENST00000618700 NRGNQ92686 78 aa16.9■□□□□ 0.3
UPF3A-211ENST00000618700 SPSB4Q96A44 273 aa16.9■□□□□ 0.3
UPF3A-211ENST00000618700 PGAM5Q96HS1 289 aa16.9■□□□□ 0.3
UPF3A-211ENST00000618700 TRAF4Q9BUZ4 470 aaPredicted RBP16.9■□□□□ 0.3
UPF3A-211ENST00000618700 CDCA4Q9BXL8 241 aa16.9■□□□□ 0.3
UPF3A-211ENST00000618700 YTHDF1Q9BYJ9 559 aaKnown RBP16.9■□□□□ 0.3
UPF3A-211ENST00000618700 G6PC2Q9NQR9 355 aa16.9■□□□□ 0.3
UPF3A-211ENST00000618700 MYEF2Q9P2K5 600 aaKnown RBP16.9■□□□□ 0.3
UPF3A-211ENST00000618700 ERVK-18Q9QC07 812 aa16.9■□□□□ 0.3
UPF3A-211ENST00000618700 POLQO75417 2590 aa16.9■□□□□ 0.3
UPF3A-211ENST00000618700 VSTM5A8MXK1 200 aa16.89■□□□□ 0.29
UPF3A-211ENST00000618700 LOC110117498-PIK3R3F6TDL0 507 aa16.89■□□□□ 0.29
UPF3A-211ENST00000618700 XRCC2O43543 280 aa16.89■□□□□ 0.29
UPF3A-211ENST00000618700 RPP14O95059 124 aaKnown RBP16.89■□□□□ 0.29
UPF3A-211ENST00000618700 CLPTM1O96005 669 aa16.89■□□□□ 0.29
UPF3A-211ENST00000618700 CD8AP01732 235 aa16.89■□□□□ 0.29
UPF3A-211ENST00000618700 KLF3P57682 345 aaPredicted RBP16.89■□□□□ 0.29
UPF3A-211ENST00000618700 GABARAPL2P60520 117 aa16.89■□□□□ 0.29
UPF3A-211ENST00000618700 ZNF92Q03936 586 aa16.89■□□□□ 0.29
UPF3A-211ENST00000618700 GK2Q14410 553 aaPredicted RBP16.89■□□□□ 0.29
UPF3A-211ENST00000618700 SWI5Q1ZZU3 235 aa16.89■□□□□ 0.29
UPF3A-211ENST00000618700 OR2G6Q5TZ20 316 aa16.89■□□□□ 0.29
UPF3A-211ENST00000618700 FDX2Q6P4F2 183 aa16.89■□□□□ 0.29
UPF3A-211ENST00000618700 CATSPERDQ86XM0 798 aa16.89■□□□□ 0.29
UPF3A-211ENST00000618700 OR2AE1Q8NHA4 323 aa16.89■□□□□ 0.29
UPF3A-211ENST00000618700 SYT3Q9BQG1 590 aa16.89■□□□□ 0.29
UPF3A-211ENST00000618700 PBOV1Q9GZY1 135 aa16.89■□□□□ 0.29
UPF3A-211ENST00000618700 OR10A2Q9H208 303 aa16.89■□□□□ 0.29
UPF3A-211ENST00000618700 LIME1Q9H400 295 aa16.89■□□□□ 0.29
UPF3A-211ENST00000618700 PLK3Q9H4B4 646 aa16.89■□□□□ 0.29
UPF3A-211ENST00000618700 OPA3Q9H6K4 179 aa16.89■□□□□ 0.29
UPF3A-211ENST00000618700 CBLN4Q9NTU7 201 aa16.89■□□□□ 0.29
UPF3A-211ENST00000618700 CHCHD3Q9NX63 227 aaKnown RBP16.89■□□□□ 0.29
UPF3A-211ENST00000618700 OR52A1Q9UKL2 312 aa16.89■□□□□ 0.29
UPF3A-211ENST00000618700 N6AMT1Q9Y5N5 214 aa16.89■□□□□ 0.29
UPF3A-211ENST00000618700 CACNA1DQ01668 2161 aa16.89■□□□□ 0.29
UPF3A-211ENST00000618700 B9A039 149 aa16.88■□□□□ 0.29
UPF3A-211ENST00000618700 TBX1O43435 398 aa16.88■□□□□ 0.29
UPF3A-211ENST00000618700 RGS10O43665 173 aa16.88■□□□□ 0.29
UPF3A-211ENST00000618700 IGLV3-1P01715 115 aa16.88■□□□□ 0.29
UPF3A-211ENST00000618700 IGHV3-13P01766 116 aa16.88■□□□□ 0.29
UPF3A-211ENST00000618700 TTRP02766 147 aa16.88■□□□□ 0.29
UPF3A-211ENST00000618700 MT-ND5P03915 603 aa16.88■□□□□ 0.29
UPF3A-211ENST00000618700 RAC2P15153 192 aa16.88■□□□□ 0.29
UPF3A-211ENST00000618700 GCH1P30793 250 aa16.88■□□□□ 0.29
UPF3A-211ENST00000618700 PSMB10P40306 273 aa16.88■□□□□ 0.29
UPF3A-211ENST00000618700 PSG7Q13046 419 aa16.88■□□□□ 0.29
UPF3A-211ENST00000618700 IRF3Q14653 427 aa16.88■□□□□ 0.29
UPF3A-211ENST00000618700 HLXQ14774 488 aaPredicted RBP16.88■□□□□ 0.29
UPF3A-211ENST00000618700 AGAP6Q5VW22 663 aa16.88■□□□□ 0.29
UPF3A-211ENST00000618700 TMPRSS11AQ6ZMR5 421 aa16.88■□□□□ 0.29
UPF3A-211ENST00000618700 SPRYD4Q8WW59 207 aaPredicted RBP16.88■□□□□ 0.29
UPF3A-211ENST00000618700 HAVCR1Q96D42 359 aa16.88■□□□□ 0.29
UPF3A-211ENST00000618700 RGCCQ9H4X1 137 aa16.88■□□□□ 0.29
UPF3A-211ENST00000618700 DUSP13Q9UII6 198 aa16.88■□□□□ 0.29
UPF3A-211ENST00000618700 LRCH1Q9Y2L9 728 aa16.88■□□□□ 0.29
UPF3A-211ENST00000618700 SNX5Q9Y5X3 404 aa16.88■□□□□ 0.29
UPF3A-211ENST00000618700 A0A0U1RQV5 110 aa16.87■□□□□ 0.29
UPF3A-211ENST00000618700 ATE1O95260 518 aa16.87■□□□□ 0.29
UPF3A-211ENST00000618700 MT-ND2P03891 347 aa16.87■□□□□ 0.29
UPF3A-211ENST00000618700 HTR1AP08908 422 aa16.87■□□□□ 0.29
UPF3A-211ENST00000618700 KITLGP21583 273 aa16.87■□□□□ 0.29
UPF3A-211ENST00000618700 MRPL28Q13084 256 aaKnown RBP16.87■□□□□ 0.29
UPF3A-211ENST00000618700 WDR38Q5JTN6 314 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 173.9 ms