RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 LAIR1Q6GTX8 287 aa12.65□□□□□ -0.38
CPSF1-212ENST00000616140 Q6ZRG5 221 aa12.65□□□□□ -0.38
CPSF1-212ENST00000616140 GALNT16Q8N428 558 aa12.65□□□□□ -0.38
CPSF1-212ENST00000616140 EXD3Q8N9H8 876 aa12.65□□□□□ -0.38
CPSF1-212ENST00000616140 TINAGL1Q9GZM7 467 aaPredicted RBP12.65□□□□□ -0.38
CPSF1-212ENST00000616140 CRLF2Q9HC73 371 aa12.65□□□□□ -0.38
CPSF1-212ENST00000616140 ZNF724A8MTY0 619 aa12.64□□□□□ -0.39
CPSF1-212ENST00000616140 C17orf112F2Z3M2 114 aa12.64□□□□□ -0.39
CPSF1-212ENST00000616140 TBPP20226 339 aa12.64□□□□□ -0.39
CPSF1-212ENST00000616140 AVPR2P30518 371 aa12.64□□□□□ -0.39
CPSF1-212ENST00000616140 ZNF121P58317 390 aaPredicted RBP12.64□□□□□ -0.39
CPSF1-212ENST00000616140 DUSP2Q05923 314 aa12.64□□□□□ -0.39
CPSF1-212ENST00000616140 ZDHHC19Q8WVZ1 309 aaPredicted RBP12.64□□□□□ -0.39
CPSF1-212ENST00000616140 FBXW5Q969U6 566 aa12.64□□□□□ -0.39
CPSF1-212ENST00000616140 PATZ1Q9HBE1 687 aaKnown RBP12.64□□□□□ -0.39
CPSF1-212ENST00000616140 RAB19A4D1S5 217 aa12.64□□□□□ -0.39
CPSF1-212ENST00000616140 H7C1Q1 480 aa12.64□□□□□ -0.39
CPSF1-212ENST00000616140 LGALS8O00214 317 aa12.64□□□□□ -0.39
CPSF1-212ENST00000616140 RGS11O94810 467 aa12.64□□□□□ -0.39
CPSF1-212ENST00000616140 MVDP53602 400 aa12.64□□□□□ -0.39
CPSF1-212ENST00000616140 ELLP55199 621 aaPredicted RBP12.64□□□□□ -0.39
CPSF1-212ENST00000616140 ZNF468Q5VIY5 522 aaPredicted RBP12.64□□□□□ -0.39
CPSF1-212ENST00000616140 TEX261Q6UWH6 196 aa12.64□□□□□ -0.39
CPSF1-212ENST00000616140 CD300LDQ6UXZ3 194 aa12.64□□□□□ -0.39
CPSF1-212ENST00000616140 TMEM182Q6ZP80 229 aaPredicted RBP12.64□□□□□ -0.39
CPSF1-212ENST00000616140 C11orf40Q8WZ69 217 aa12.64□□□□□ -0.39
CPSF1-212ENST00000616140 U3KQ87 197 aa12.64□□□□□ -0.39
CPSF1-212ENST00000616140 TPOP07202 933 aa12.64□□□□□ -0.39
CPSF1-212ENST00000616140 FAHP16930 419 aa12.64□□□□□ -0.39
CPSF1-212ENST00000616140 SLC25A26Q70HW3 274 aa12.64□□□□□ -0.39
CPSF1-212ENST00000616140 LFNGQ8NES3 379 aa12.64□□□□□ -0.39
CPSF1-212ENST00000616140 ST8SIA2Q92186 375 aa12.64□□□□□ -0.39
CPSF1-212ENST00000616140 UFSP2Q9NUQ7 469 aa12.64□□□□□ -0.39
CPSF1-212ENST00000616140 B3GAT1Q9P2W7 334 aa12.64□□□□□ -0.39
CPSF1-212ENST00000616140 LRP12Q9Y561 859 aa12.64□□□□□ -0.39
CPSF1-212ENST00000616140 SCN3AQ9NY46 2000 aa12.64□□□□□ -0.39
CPSF1-212ENST00000616140 LILRA5A6NI73 299 aa12.64□□□□□ -0.39
CPSF1-212ENST00000616140 PPP1R2P9O14990 202 aa12.64□□□□□ -0.39
CPSF1-212ENST00000616140 WNT1P04628 370 aa12.64□□□□□ -0.39
CPSF1-212ENST00000616140 ABHD1Q96SE0 405 aa12.64□□□□□ -0.39
CPSF1-212ENST00000616140 MENTQ9BUN1 341 aa12.64□□□□□ -0.39
CPSF1-212ENST00000616140 SLC25A32Q9H2D1 315 aa12.64□□□□□ -0.39
CPSF1-212ENST00000616140 A0A1B0GTH9 108 aa12.63□□□□□ -0.39
CPSF1-212ENST00000616140 TAAR5O14804 337 aa12.63□□□□□ -0.39
CPSF1-212ENST00000616140 SPINT2O43291 252 aa12.63□□□□□ -0.39
CPSF1-212ENST00000616140 RPS2P15880 293 aaKnown RBP12.63□□□□□ -0.39
CPSF1-212ENST00000616140 CDAP32320 146 aa12.63□□□□□ -0.39
CPSF1-212ENST00000616140 HOXA1P49639 335 aaPredicted RBP12.63□□□□□ -0.39
CPSF1-212ENST00000616140 NDUFA6P56556 154 aa12.63□□□□□ -0.39
CPSF1-212ENST00000616140 WDR38Q5JTN6 314 aa12.63□□□□□ -0.39
CPSF1-212ENST00000616140 TMEM268Q5VZI3 342 aa12.63□□□□□ -0.39
CPSF1-212ENST00000616140 LYG2Q86SG7 212 aa12.63□□□□□ -0.39
CPSF1-212ENST00000616140 RTN4IP1Q8WWV3 396 aaPredicted RBP12.63□□□□□ -0.39
CPSF1-212ENST00000616140 TTC9Q92623 222 aa12.63□□□□□ -0.39
CPSF1-212ENST00000616140 UBE2ZQ9H832 354 aaPredicted RBP12.63□□□□□ -0.39
CPSF1-212ENST00000616140 FFAR1O14842 300 aa12.63□□□□□ -0.39
CPSF1-212ENST00000616140 ABCD3P28288 659 aa12.63□□□□□ -0.39
CPSF1-212ENST00000616140 CCL11P51671 97 aa12.63□□□□□ -0.39
CPSF1-212ENST00000616140 TMEM88Q6PEY1 159 aa12.63□□□□□ -0.39
CPSF1-212ENST00000616140 KIAA1958Q8N8K9 716 aa12.63□□□□□ -0.39
CPSF1-212ENST00000616140 OR11L1Q8NGX0 322 aa12.63□□□□□ -0.39
CPSF1-212ENST00000616140 TERB2Q8NHR7 220 aa12.63□□□□□ -0.39
CPSF1-212ENST00000616140 INTS12Q96CB8 462 aaKnown RBP12.63□□□□□ -0.39
CPSF1-212ENST00000616140 DAZAP1Q96EP5 407 aaKnown RBP12.63□□□□□ -0.39
CPSF1-212ENST00000616140 UHRF2Q96PU4 802 aa12.63□□□□□ -0.39
CPSF1-212ENST00000616140 TWSG1Q9GZX9 223 aa12.63□□□□□ -0.39
CPSF1-212ENST00000616140 SLC23A1Q9UHI7 598 aa12.63□□□□□ -0.39
CPSF1-212ENST00000616140 SHISA8B8ZZ34 492 aa12.63□□□□□ -0.39
CPSF1-212ENST00000616140 B4GALT1P15291 398 aa12.63□□□□□ -0.39
CPSF1-212ENST00000616140 RFC3P40938 356 aa12.63□□□□□ -0.39
CPSF1-212ENST00000616140 DEFA6Q01524 100 aa12.63□□□□□ -0.39
CPSF1-212ENST00000616140 KIAA0141Q14154 515 aaPredicted RBP12.63□□□□□ -0.39
CPSF1-212ENST00000616140 IFI44Q8TCB0 444 aa12.63□□□□□ -0.39
CPSF1-212ENST00000616140 C2CD4CQ8TF44 421 aa12.63□□□□□ -0.39
CPSF1-212ENST00000616140 C4orf45Q96LM5 186 aa12.63□□□□□ -0.39
CPSF1-212ENST00000616140 ALKBH3Q96Q83 286 aaPredicted RBP12.63□□□□□ -0.39
CPSF1-212ENST00000616140 DNAJB12Q9NXW2 375 aaKnown RBP12.63□□□□□ -0.39
CPSF1-212ENST00000616140 FBXO4Q9UKT5 387 aa12.63□□□□□ -0.39
CPSF1-212ENST00000616140 METTL12A8MUP2 240 aa12.62□□□□□ -0.39
CPSF1-212ENST00000616140 XRCC2O43543 280 aa12.62□□□□□ -0.39
CPSF1-212ENST00000616140 ANGPTL7O43827 346 aa12.62□□□□□ -0.39
CPSF1-212ENST00000616140 CTXN2P0C2S0 81 aa12.62□□□□□ -0.39
CPSF1-212ENST00000616140 FMODQ06828 376 aa12.62□□□□□ -0.39
CPSF1-212ENST00000616140 CPEB4Q17RY0 729 aaKnown RBP eCLIP12.62□□□□□ -0.396e-8■■■■■ 50.8
CPSF1-212ENST00000616140 TBC1D28Q2M2D7 210 aa12.62□□□□□ -0.39
CPSF1-212ENST00000616140 ZNF628Q5EBL2 1059 aa12.62□□□□□ -0.39
CPSF1-212ENST00000616140 CBLN3Q6UW01 205 aa12.62□□□□□ -0.39
CPSF1-212ENST00000616140 ZC3HAV1Q7Z2W4 902 aaKnown RBP12.62□□□□□ -0.39
CPSF1-212ENST00000616140 ZBTB44Q8NCP5 570 aa12.62□□□□□ -0.39
CPSF1-212ENST00000616140 OR1N1Q8NGS0 311 aa12.62□□□□□ -0.39
CPSF1-212ENST00000616140 COL4A1P02462 1669 aa12.62□□□□□ -0.39
CPSF1-212ENST00000616140 RAB27BO00194 218 aa12.62□□□□□ -0.39
CPSF1-212ENST00000616140 LRP3O75074 770 aa12.62□□□□□ -0.39
CPSF1-212ENST00000616140 MT-ND4LP03901 98 aa12.62□□□□□ -0.39
CPSF1-212ENST00000616140 ADRA2CP18825 462 aa12.62□□□□□ -0.39
CPSF1-212ENST00000616140 GALP22466 123 aa12.62□□□□□ -0.39
CPSF1-212ENST00000616140 NFYBP25208 207 aa12.62□□□□□ -0.39
CPSF1-212ENST00000616140 GLDNQ6ZMI3 551 aaPredicted RBP12.62□□□□□ -0.39
CPSF1-212ENST00000616140 HIPK2Q9H2X6 1198 aa12.62□□□□□ -0.39
CPSF1-212ENST00000616140 ADGRL4Q9HBW9 690 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms