RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 TMEM212A6NML5 194 aa12.36□□□□□ -0.43
UPF1-211ENST00000600868 H3BSA7 217 aa12.36□□□□□ -0.43
UPF1-211ENST00000600868 TBX1O43435 398 aa12.36□□□□□ -0.43
UPF1-211ENST00000600868 XRCC2O43543 280 aa12.36□□□□□ -0.43
UPF1-211ENST00000600868 PLPP2O43688 288 aa12.36□□□□□ -0.43
UPF1-211ENST00000600868 IGLV3-1P01715 115 aa12.36□□□□□ -0.43
UPF1-211ENST00000600868 TTRP02766 147 aa12.36□□□□□ -0.43
UPF1-211ENST00000600868 ISG15P05161 165 aa12.36□□□□□ -0.43
UPF1-211ENST00000600868 CD1AP06126 327 aa12.36□□□□□ -0.43
UPF1-211ENST00000600868 HSMCR30P0CW71 290 aa12.36□□□□□ -0.43
UPF1-211ENST00000600868 COX6B1P14854 86 aa12.36□□□□□ -0.43
UPF1-211ENST00000600868 ANOS1P23352 680 aa12.36□□□□□ -0.43
UPF1-211ENST00000600868 CFL1P23528 166 aaKnown RBP12.36□□□□□ -0.43
UPF1-211ENST00000600868 RPS23P62266 143 aaKnown RBP12.36□□□□□ -0.43
UPF1-211ENST00000600868 MALLQ13021 153 aa12.36□□□□□ -0.43
UPF1-211ENST00000600868 SNTB2Q13425 540 aaKnown RBP12.36□□□□□ -0.43
UPF1-211ENST00000600868 TPBGQ13641 420 aa12.36□□□□□ -0.43
UPF1-211ENST00000600868 NEDD8Q15843 81 aa12.36□□□□□ -0.43
UPF1-211ENST00000600868 GLYATL3Q5SZD4 288 aa12.36□□□□□ -0.43
UPF1-211ENST00000600868 SYT6Q5T7P8 510 aaPredicted RBP12.36□□□□□ -0.43
UPF1-211ENST00000600868 ADAM5Q6NVV9 412 aa12.36□□□□□ -0.43
UPF1-211ENST00000600868 OR1J1Q8NGS3 322 aa12.36□□□□□ -0.43
UPF1-211ENST00000600868 MUL1Q969V5 352 aa12.36□□□□□ -0.43
UPF1-211ENST00000600868 PPP1R14AQ96A00 147 aa12.36□□□□□ -0.43
UPF1-211ENST00000600868 SPSB4Q96A44 273 aa12.36□□□□□ -0.43
UPF1-211ENST00000600868 SGK3Q96BR1 496 aa12.36□□□□□ -0.43
UPF1-211ENST00000600868 SMIM19Q96E16 107 aa12.36□□□□□ -0.43
UPF1-211ENST00000600868 OPALINQ96PE5 141 aa12.36□□□□□ -0.43
UPF1-211ENST00000600868 HS3ST6Q96QI5 342 aa12.36□□□□□ -0.43
UPF1-211ENST00000600868 OR51B6Q9H340 312 aa12.36□□□□□ -0.43
UPF1-211ENST00000600868 GCN1Q92616 2671 aaKnown RBP12.36□□□□□ -0.43
UPF1-211ENST00000600868 COL12A1Q99715 3063 aa12.36□□□□□ -0.43
UPF1-211ENST00000600868 FAM221AA4D161 298 aa12.35□□□□□ -0.43
UPF1-211ENST00000600868 INMTO95050 263 aa12.35□□□□□ -0.43
UPF1-211ENST00000600868 ZFPL1O95159 310 aa12.35□□□□□ -0.43
UPF1-211ENST00000600868 ATE1O95260 518 aa12.35□□□□□ -0.43
UPF1-211ENST00000600868 CLPTM1O96005 669 aa12.35□□□□□ -0.43
UPF1-211ENST00000600868 UBCP0CG48 685 aaKnown RBP12.35□□□□□ -0.43
UPF1-211ENST00000600868 CPEP16870 476 aa12.35□□□□□ -0.43
UPF1-211ENST00000600868 CELP19835 753 aa12.35□□□□□ -0.43
UPF1-211ENST00000600868 TIGD6Q17RP2 521 aa12.35□□□□□ -0.43
UPF1-211ENST00000600868 ARMCX4Q5H9R4 360 aa12.35□□□□□ -0.43
UPF1-211ENST00000600868 TMEM244Q5VVB8 128 aa12.35□□□□□ -0.43
UPF1-211ENST00000600868 FBXW12Q6X9E4 464 aa12.35□□□□□ -0.43
UPF1-211ENST00000600868 ZFP41Q8N8Y5 198 aa12.35□□□□□ -0.43
UPF1-211ENST00000600868 KBTBD8Q8NFY9 601 aa12.35□□□□□ -0.43
UPF1-211ENST00000600868 SLC25A40Q8TBP6 338 aa12.35□□□□□ -0.43
UPF1-211ENST00000600868 TMEM171Q8WVE6 324 aa12.35□□□□□ -0.43
UPF1-211ENST00000600868 AKAP1Q92667 903 aaKnown RBP eCLIP12.35□□□□□ -0.43
UPF1-211ENST00000600868 UFD1Q92890 307 aa12.35□□□□□ -0.43
UPF1-211ENST00000600868 ITFG2Q969R8 447 aa12.35□□□□□ -0.43
UPF1-211ENST00000600868 MARS2Q96GW9 593 aaKnown RBP12.35□□□□□ -0.43
UPF1-211ENST00000600868 REEP6Q96HR9 211 aa12.35□□□□□ -0.43
UPF1-211ENST00000600868 PDCD1LG2Q9BQ51 273 aa12.35□□□□□ -0.43
UPF1-211ENST00000600868 REPIN1Q9BWE0 567 aaKnown RBP12.35□□□□□ -0.43
UPF1-211ENST00000600868 OR2J1Q9GZK6 312 aa12.35□□□□□ -0.43
UPF1-211ENST00000600868 POFUT1Q9H488 388 aa12.35□□□□□ -0.43
UPF1-211ENST00000600868 OPA3Q9H6K4 179 aa12.35□□□□□ -0.43
UPF1-211ENST00000600868 ZNF442Q9H7R0 627 aa12.35□□□□□ -0.43
UPF1-211ENST00000600868 POU2F3Q9UKI9 436 aa12.35□□□□□ -0.43
UPF1-211ENST00000600868 ATP23Q9Y6H3 246 aa12.35□□□□□ -0.43
UPF1-211ENST00000600868 USP9YO00507 2555 aaPredicted RBP12.35□□□□□ -0.43
UPF1-211ENST00000600868 SPTAN1Q13813 2472 aaKnown RBP12.35□□□□□ -0.43
UPF1-211ENST00000600868 A0A1B0GTI1 187 aa12.34□□□□□ -0.43
UPF1-211ENST00000600868 GPRIN2O60269 458 aa12.34□□□□□ -0.43
UPF1-211ENST00000600868 PLAUP00749 431 aa12.34□□□□□ -0.43
UPF1-211ENST00000600868 CD53P19397 219 aa12.34□□□□□ -0.43
UPF1-211ENST00000600868 CCL1P22362 96 aa12.34□□□□□ -0.43
UPF1-211ENST00000600868 PSMB9P28065 219 aa12.34□□□□□ -0.43
UPF1-211ENST00000600868 ERVS71-1P61550 626 aa12.34□□□□□ -0.43
UPF1-211ENST00000600868 ZNF92Q03936 586 aa12.34□□□□□ -0.43
UPF1-211ENST00000600868 GK2Q14410 553 aaPredicted RBP12.34□□□□□ -0.43
UPF1-211ENST00000600868 ZNF718Q3SXZ3 478 aa12.34□□□□□ -0.43
UPF1-211ENST00000600868 MBNL2Q5VZF2 373 aaKnown RBP12.34□□□□□ -0.43
UPF1-211ENST00000600868 RGS7BPQ6MZT1 257 aaPredicted RBP12.34□□□□□ -0.43
UPF1-211ENST00000600868 Q6ZSR3 168 aa12.34□□□□□ -0.43
UPF1-211ENST00000600868 ZNF676Q8N7Q3 588 aa12.34□□□□□ -0.43
UPF1-211ENST00000600868 PLPP7Q8NBV4 271 aa12.34□□□□□ -0.43
UPF1-211ENST00000600868 CCDC54Q8NEL0 328 aa12.34□□□□□ -0.43
UPF1-211ENST00000600868 OR5AK2Q8NH90 309 aa12.34□□□□□ -0.43
UPF1-211ENST00000600868 OR51E1Q8TCB6 317 aa12.34□□□□□ -0.43
UPF1-211ENST00000600868 GHSRQ92847 366 aa12.34□□□□□ -0.43
UPF1-211ENST00000600868 LYZL4Q96KX0 146 aa12.34□□□□□ -0.43
UPF1-211ENST00000600868 PGLYRP3Q96LB9 341 aa12.34□□□□□ -0.43
UPF1-211ENST00000600868 COMMD4Q9H0A8 199 aa12.34□□□□□ -0.43
UPF1-211ENST00000600868 GPR84Q9NQS5 396 aa12.34□□□□□ -0.43
UPF1-211ENST00000600868 CA10Q9NS85 328 aa12.34□□□□□ -0.43
UPF1-211ENST00000600868 PTTG3PQ9NZH4 202 aa12.34□□□□□ -0.43
UPF1-211ENST00000600868 SCOCQ9UIL1 159 aa12.34□□□□□ -0.43
UPF1-211ENST00000600868 ZNF281Q9Y2X9 895 aa12.34□□□□□ -0.43
UPF1-211ENST00000600868 ICE1Q9Y2F5 2266 aa12.34□□□□□ -0.43
UPF1-211ENST00000600868 PNMA8CA0A1B0GUJ8 204 aa12.33□□□□□ -0.44
UPF1-211ENST00000600868 LOC390937A0A1W2PQ73 354 aa12.33□□□□□ -0.44
UPF1-211ENST00000600868 VSTM5A8MXK1 200 aa12.33□□□□□ -0.44
UPF1-211ENST00000600868 E7EQL1 145 aa12.33□□□□□ -0.44
UPF1-211ENST00000600868 P2RY10O00398 339 aa12.33□□□□□ -0.44
UPF1-211ENST00000600868 RAC2P15153 192 aa12.33□□□□□ -0.44
UPF1-211ENST00000600868 ZNF250P15622 560 aa12.33□□□□□ -0.44
UPF1-211ENST00000600868 ACHEP22303 614 aa12.33□□□□□ -0.44
UPF1-211ENST00000600868 THBS4P35443 961 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms