RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 PIP4P1Q86T03 277 aa12.71□□□□□ -0.37
VRK3-217ENST00000599538 ACBD4Q8NC06 268 aa12.71□□□□□ -0.37
VRK3-217ENST00000599538 DEFB124Q8NES8 71 aa12.71□□□□□ -0.37
VRK3-217ENST00000599538 OR4C16Q8NGL9 310 aa12.71□□□□□ -0.37
VRK3-217ENST00000599538 OR56B4Q8NH76 319 aa12.71□□□□□ -0.37
VRK3-217ENST00000599538 DVL3Q92997 716 aaPredicted RBP12.71□□□□□ -0.37
VRK3-217ENST00000599538 CMBLQ96DG6 245 aa12.71□□□□□ -0.37
VRK3-217ENST00000599538 SORCS2Q96PQ0 1159 aa12.71□□□□□ -0.37
VRK3-217ENST00000599538 MED28Q9H204 178 aa12.71□□□□□ -0.37
VRK3-217ENST00000599538 BOKQ9UMX3 212 aaPredicted RBP12.71□□□□□ -0.37
VRK3-217ENST00000599538 MRPS18CQ9Y3D5 142 aaKnown RBP12.71□□□□□ -0.37
VRK3-217ENST00000599538 FAM186AA6NE01 2351 aa12.71□□□□□ -0.37
VRK3-217ENST00000599538 SPAARA0A1B0GVQ0 90 aa12.71□□□□□ -0.38
VRK3-217ENST00000599538 A6NL46 340 aa12.71□□□□□ -0.38
VRK3-217ENST00000599538 ARPC1BO15143 372 aaKnown RBP12.71□□□□□ -0.38
VRK3-217ENST00000599538 ITGB2P05107 769 aa12.71□□□□□ -0.38
VRK3-217ENST00000599538 ZNF20P17024 532 aa12.71□□□□□ -0.38
VRK3-217ENST00000599538 RAB3AP20336 220 aa12.71□□□□□ -0.38
VRK3-217ENST00000599538 CTSSP25774 331 aa12.71□□□□□ -0.38
VRK3-217ENST00000599538 PRSS3P35030 304 aa12.71□□□□□ -0.38
VRK3-217ENST00000599538 SLC6A9P48067 706 aa12.71□□□□□ -0.38
VRK3-217ENST00000599538 PMPCAQ10713 525 aa12.71□□□□□ -0.38
VRK3-217ENST00000599538 NCCRP1Q6ZVX7 275 aaPredicted RBP12.71□□□□□ -0.38
VRK3-217ENST00000599538 AAED1Q7RTV5 226 aa12.71□□□□□ -0.38
VRK3-217ENST00000599538 SLC6A15Q9H2J7 730 aa12.71□□□□□ -0.38
VRK3-217ENST00000599538 PLEK2Q9NYT0 353 aa12.71□□□□□ -0.38
VRK3-217ENST00000599538 IGKV1-9A0A0C4DH69 117 aa12.7□□□□□ -0.38
VRK3-217ENST00000599538 IGHV3-9P01782 118 aa12.7□□□□□ -0.38
VRK3-217ENST00000599538 GSTT2BP0CG30 244 aa12.7□□□□□ -0.38
VRK3-217ENST00000599538 VSIG8P0DPA2 414 aa12.7□□□□□ -0.38
VRK3-217ENST00000599538 B4GALT1P15291 398 aa12.7□□□□□ -0.38
VRK3-217ENST00000599538 CCL1P22362 96 aa12.7□□□□□ -0.38
VRK3-217ENST00000599538 MRPS34P82930 218 aaKnown RBP12.7□□□□□ -0.38
VRK3-217ENST00000599538 QRFPP83859 136 aa12.7□□□□□ -0.38
VRK3-217ENST00000599538 AIMP2Q13155 320 aaKnown RBP12.7□□□□□ -0.38
VRK3-217ENST00000599538 SRSF6Q13247 344 aaKnown RBP12.7□□□□□ -0.38
VRK3-217ENST00000599538 FAM27BQ5VT28 67 aa12.7□□□□□ -0.38
VRK3-217ENST00000599538 Q6ZTK2 550 aa12.7□□□□□ -0.38
VRK3-217ENST00000599538 OR14K1Q8NGZ2 314 aa12.7□□□□□ -0.38
VRK3-217ENST00000599538 OR8S1Q8NH09 359 aa12.7□□□□□ -0.38
VRK3-217ENST00000599538 GPX8Q8TED1 209 aa12.7□□□□□ -0.38
VRK3-217ENST00000599538 C15orf40Q8WUR7 153 aa12.7□□□□□ -0.38
VRK3-217ENST00000599538 PNPLA2Q96AD5 504 aa12.7□□□□□ -0.38
VRK3-217ENST00000599538 DACT3Q96B18 629 aaPredicted RBP12.7□□□□□ -0.38
VRK3-217ENST00000599538 INTS12Q96CB8 462 aaKnown RBP12.7□□□□□ -0.38
VRK3-217ENST00000599538 SEH1LQ96EE3 360 aa12.7□□□□□ -0.38
VRK3-217ENST00000599538 PGAM5Q96HS1 289 aa12.7□□□□□ -0.38
VRK3-217ENST00000599538 TTTY12Q9BZ98 90 aa12.7□□□□□ -0.38
VRK3-217ENST00000599538 B3GNT4Q9C0J1 378 aa12.7□□□□□ -0.38
VRK3-217ENST00000599538 METTL17Q9H7H0 456 aaPredicted RBP12.7□□□□□ -0.38
VRK3-217ENST00000599538 ING3Q9NXR8 418 aa12.7□□□□□ -0.38
VRK3-217ENST00000599538 NAP1L6A6NFF2 107 aa12.7□□□□□ -0.38
VRK3-217ENST00000599538 PEX14O75381 377 aa12.7□□□□□ -0.38
VRK3-217ENST00000599538 TPPPO94811 219 aa12.7□□□□□ -0.38
VRK3-217ENST00000599538 CD3DP04234 171 aa12.7□□□□□ -0.38
VRK3-217ENST00000599538 OTX1P32242 354 aaPredicted RBP12.7□□□□□ -0.38
VRK3-217ENST00000599538 ZNF93P35789 620 aaPredicted RBP12.7□□□□□ -0.38
VRK3-217ENST00000599538 CASRP41180 1078 aa12.7□□□□□ -0.38
VRK3-217ENST00000599538 RAD52P43351 418 aa12.7□□□□□ -0.38
VRK3-217ENST00000599538 LHX2P50458 406 aa12.7□□□□□ -0.38
VRK3-217ENST00000599538 ZNF84P51523 738 aa12.7□□□□□ -0.38
VRK3-217ENST00000599538 HGFACQ04756 655 aa12.7□□□□□ -0.38
VRK3-217ENST00000599538 ELFN2Q5R3F8 820 aa12.7□□□□□ -0.38
VRK3-217ENST00000599538 SFRP5Q5T4F7 317 aa12.7□□□□□ -0.38
VRK3-217ENST00000599538 GALNTL5Q7Z4T8 443 aa12.7□□□□□ -0.38
VRK3-217ENST00000599538 ANGPTL5Q86XS5 388 aa12.7□□□□□ -0.38
VRK3-217ENST00000599538 SLC22A24Q8N4F4 322 aa12.7□□□□□ -0.38
VRK3-217ENST00000599538 FGFBP3Q8TAT2 258 aa12.7□□□□□ -0.38
VRK3-217ENST00000599538 NOX3Q9HBY0 568 aa12.7□□□□□ -0.38
VRK3-217ENST00000599538 RYDENQ9NUL5 291 aaKnown RBP12.7□□□□□ -0.38
VRK3-217ENST00000599538 TMEM235A6NFC5 223 aa12.69□□□□□ -0.38
VRK3-217ENST00000599538 RAB27BO00194 218 aa12.69□□□□□ -0.38
VRK3-217ENST00000599538 IGLV3-1P01715 115 aa12.69□□□□□ -0.38
VRK3-217ENST00000599538 YES1P07947 543 aa12.69□□□□□ -0.38
VRK3-217ENST00000599538 ANXA7P20073 488 aaKnown RBP12.69□□□□□ -0.38
VRK3-217ENST00000599538 STOMP27105 288 aa12.69□□□□□ -0.38
VRK3-217ENST00000599538 OR3A4PP47883 348 aa12.69□□□□□ -0.38
VRK3-217ENST00000599538 GZMKP49863 264 aa12.69□□□□□ -0.38
VRK3-217ENST00000599538 RAG2P55895 527 aa12.69□□□□□ -0.38
VRK3-217ENST00000599538 PRSS12P56730 875 aa12.69□□□□□ -0.38
VRK3-217ENST00000599538 MAB21L1Q13394 359 aa12.69□□□□□ -0.38
VRK3-217ENST00000599538 CSRP2Q16527 193 aa12.69□□□□□ -0.38
VRK3-217ENST00000599538 SNAI3Q3KNW1 292 aa12.69□□□□□ -0.38
VRK3-217ENST00000599538 TMEM251Q8N6I4 163 aa12.69□□□□□ -0.38
VRK3-217ENST00000599538 CLEC1AQ8NC01 280 aa12.69□□□□□ -0.38
VRK3-217ENST00000599538 FOXRED1Q96CU9 486 aaPredicted RBP12.69□□□□□ -0.38
VRK3-217ENST00000599538 SEC22CQ9BRL7 303 aa12.69□□□□□ -0.38
VRK3-217ENST00000599538 PRRC2CQ9Y520 2896 aaKnown RBP12.69□□□□□ -0.38
VRK3-217ENST00000599538 A0A1W2PP11 408 aa12.68□□□□□ -0.38
VRK3-217ENST00000599538 M0R135 149 aa12.68□□□□□ -0.38
VRK3-217ENST00000599538 FABP7O15540 132 aa12.68□□□□□ -0.38
VRK3-217ENST00000599538 CYTIPO60759 359 aa12.68□□□□□ -0.38
VRK3-217ENST00000599538 C1QBP02746 253 aa12.68□□□□□ -0.38
VRK3-217ENST00000599538 GTF2F2P13984 249 aa12.68□□□□□ -0.38
VRK3-217ENST00000599538 CLDN18P56856 261 aa12.68□□□□□ -0.38
VRK3-217ENST00000599538 FAPQ12884 760 aa12.68□□□□□ -0.38
VRK3-217ENST00000599538 CEACAM16Q2WEN9 425 aa12.68□□□□□ -0.38
VRK3-217ENST00000599538 ZNF774Q6NX45 483 aa12.68□□□□□ -0.38
VRK3-217ENST00000599538 CRIP3Q6Q6R5 217 aa12.68□□□□□ -0.38
VRK3-217ENST00000599538 DOK3Q7L591 496 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms