RNA–Protein interactions for RNA: ENST00000580751.5

SS18-216, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-216ENST00000580751 YIPF7Q8N8F6 280 aa13.39□□□□□ -0.27
SS18-216ENST00000580751 SMAP2Q8WU79 429 aaPredicted RBP13.39□□□□□ -0.27
SS18-216ENST00000580751 NEUROG1Q92886 237 aa13.39□□□□□ -0.27
SS18-216ENST00000580751 YIPF6Q96EC8 236 aa13.39□□□□□ -0.27
SS18-216ENST00000580751 LURAP1Q96LR2 239 aa13.39□□□□□ -0.27
SS18-216ENST00000580751 DCLRE1CQ96SD1 692 aaKnown RBP13.39□□□□□ -0.27
SS18-216ENST00000580751 ZNF442Q9H7R0 627 aa13.39□□□□□ -0.27
SS18-216ENST00000580751 MOB1AQ9H8S9 216 aa13.39□□□□□ -0.27
SS18-216ENST00000580751 ELOVL3Q9HB03 270 aa13.39□□□□□ -0.27
SS18-216ENST00000580751 PNRC2Q9NPJ4 139 aaKnown RBP13.39□□□□□ -0.27
SS18-216ENST00000580751 NDUFB11Q9NX14 153 aa13.39□□□□□ -0.27
SS18-216ENST00000580751 RTTNQ86VV8 2226 aa13.38□□□□□ -0.27
SS18-216ENST00000580751 VSTM5A8MXK1 200 aa13.38□□□□□ -0.27
SS18-216ENST00000580751 ICMTO60725 284 aa13.38□□□□□ -0.27
SS18-216ENST00000580751 CD36P16671 472 aa13.38□□□□□ -0.27
SS18-216ENST00000580751 GABRA5P31644 462 aa13.38□□□□□ -0.27
SS18-216ENST00000580751 GLRXP35754 106 aa13.38□□□□□ -0.27
SS18-216ENST00000580751 RAD52P43351 418 aa13.38□□□□□ -0.27
SS18-216ENST00000580751 ZNF829Q3KNS6 432 aaPredicted RBP13.38□□□□□ -0.27
SS18-216ENST00000580751 TP53I3Q53FA7 332 aa13.38□□□□□ -0.27
SS18-216ENST00000580751 DMKNQ6E0U4 476 aaPredicted RBP13.38□□□□□ -0.27
SS18-216ENST00000580751 PAMR1Q6UXH9 720 aa13.38□□□□□ -0.27
SS18-216ENST00000580751 PHC2Q8IXK0 858 aa13.38□□□□□ -0.27
SS18-216ENST00000580751 C1orf174Q8IYL3 243 aa13.38□□□□□ -0.27
SS18-216ENST00000580751 RAB2BQ8WUD1 216 aa13.38□□□□□ -0.27
SS18-216ENST00000580751 THRSPQ92748 146 aa13.38□□□□□ -0.27
SS18-216ENST00000580751 ITFG2Q969R8 447 aa13.38□□□□□ -0.27
SS18-216ENST00000580751 SPTSSAQ969W0 71 aa13.38□□□□□ -0.27
SS18-216ENST00000580751 TMIGD2Q96BF3 282 aa13.38□□□□□ -0.27
SS18-216ENST00000580751 DGCR14Q96DF8 476 aaKnown RBP13.38□□□□□ -0.27
SS18-216ENST00000580751 SMIM19Q96E16 107 aa13.38□□□□□ -0.27
SS18-216ENST00000580751 AMELYQ99218 206 aa13.38□□□□□ -0.27
SS18-216ENST00000580751 KCNJ15Q99712 375 aa13.38□□□□□ -0.27
SS18-216ENST00000580751 BCL2L14Q9BZR8 327 aa13.38□□□□□ -0.27
SS18-216ENST00000580751 SP140LQ9H930 580 aa13.38□□□□□ -0.27
SS18-216ENST00000580751 ACOXLQ9NUZ1 547 aa13.38□□□□□ -0.27
SS18-216ENST00000580751 SLCO1C1Q9NYB5 712 aa13.38□□□□□ -0.27
SS18-216ENST00000580751 RAI1Q7Z5J4 1906 aaPredicted RBP13.38□□□□□ -0.27
SS18-216ENST00000580751 J3QW42 95 aa13.37□□□□□ -0.27
SS18-216ENST00000580751 SMPD2O60906 423 aa13.37□□□□□ -0.27
SS18-216ENST00000580751 FAM157BP0CG42 384 aa13.37□□□□□ -0.27
SS18-216ENST00000580751 APOBEC3AP31941 199 aaPredicted RBP13.37□□□□□ -0.27
SS18-216ENST00000580751 OTX1P32242 354 aaPredicted RBP13.37□□□□□ -0.27
SS18-216ENST00000580751 LIPAP38571 399 aa13.37□□□□□ -0.27
SS18-216ENST00000580751 FABP6P51161 128 aa13.37□□□□□ -0.27
SS18-216ENST00000580751 UCP2P55851 309 aa13.37□□□□□ -0.27
SS18-216ENST00000580751 CDK5R1Q15078 307 aa13.37□□□□□ -0.27
SS18-216ENST00000580751 TAF13Q15543 124 aa13.37□□□□□ -0.27
SS18-216ENST00000580751 TSTQ16762 297 aaKnown RBP13.37□□□□□ -0.27
SS18-216ENST00000580751 VHLLQ6RSH7 139 aa13.37□□□□□ -0.27
SS18-216ENST00000580751 FBXL14Q8N1E6 418 aa13.37□□□□□ -0.27
SS18-216ENST00000580751 OR10S1Q8NGN2 331 aa13.37□□□□□ -0.27
SS18-216ENST00000580751 C4orf45Q96LM5 186 aa13.37□□□□□ -0.27
SS18-216ENST00000580751 RBM38Q9H0Z9 239 aaKnown RBP13.37□□□□□ -0.27
SS18-216ENST00000580751 CENPMQ9NSP4 180 aa13.37□□□□□ -0.27
SS18-216ENST00000580751 ST6GALNAC2Q9UJ37 374 aa13.37□□□□□ -0.27
SS18-216ENST00000580751 LRP12Q9Y561 859 aa13.37□□□□□ -0.27
SS18-216ENST00000580751 R4GMQ9 66 aa13.37□□□□□ -0.27
SS18-216ENST00000580751 CCDC168Q8NDH2 2452 aa13.36□□□□□ -0.27
SS18-216ENST00000580751 TMEM212A6NML5 194 aa13.36□□□□□ -0.27
SS18-216ENST00000580751 PRR32B1ATL7 298 aa13.36□□□□□ -0.27
SS18-216ENST00000580751 NOL3O60936 208 aaKnown RBP13.36□□□□□ -0.27
SS18-216ENST00000580751 LALBAP00709 142 aa13.36□□□□□ -0.27
SS18-216ENST00000580751 SERPINA3P01011 423 aa13.36□□□□□ -0.27
SS18-216ENST00000580751 RAF1P04049 648 aa13.36□□□□□ -0.27
SS18-216ENST00000580751 HLA-DPB1P04440 258 aa13.36□□□□□ -0.27
SS18-216ENST00000580751 CELP19835 753 aa13.36□□□□□ -0.27
SS18-216ENST00000580751 HSD11B1P28845 292 aa13.36□□□□□ -0.27
SS18-216ENST00000580751 THBS4P35443 961 aa13.36□□□□□ -0.27
SS18-216ENST00000580751 TGFBR2P37173 567 aa13.36□□□□□ -0.27
SS18-216ENST00000580751 WNT5AP41221 380 aa13.36□□□□□ -0.27
SS18-216ENST00000580751 TPTEP56180 551 aa13.36□□□□□ -0.27
SS18-216ENST00000580751 PSMA6P60900 246 aaKnown RBP13.36□□□□□ -0.27
SS18-216ENST00000580751 ALKBH1Q13686 389 aaKnown RBP13.36□□□□□ -0.27
SS18-216ENST00000580751 KRTAP27-1Q3LI81 207 aa13.36□□□□□ -0.27
SS18-216ENST00000580751 AGAP6Q5VW22 663 aa13.36□□□□□ -0.27
SS18-216ENST00000580751 CD200R1LQ6Q8B3 271 aa13.36□□□□□ -0.27
SS18-216ENST00000580751 LRRN1Q6UXK5 716 aa13.36□□□□□ -0.27
SS18-216ENST00000580751 ZNF101Q8IZC7 436 aa13.36□□□□□ -0.27
SS18-216ENST00000580751 MUC15Q8N387 334 aa13.36□□□□□ -0.27
SS18-216ENST00000580751 OR2G2Q8NGZ5 317 aa13.36□□□□□ -0.27
SS18-216ENST00000580751 ABHD4Q8TB40 342 aa13.36□□□□□ -0.27
SS18-216ENST00000580751 TMEM171Q8WVE6 324 aa13.36□□□□□ -0.27
SS18-216ENST00000580751 SLC7A6Q92536 515 aa13.36□□□□□ -0.27
SS18-216ENST00000580751 PHYHIPQ92561 330 aa13.36□□□□□ -0.27
SS18-216ENST00000580751 DOK1Q99704 481 aa13.36□□□□□ -0.27
SS18-216ENST00000580751 FUNDC2Q9BWH2 189 aa13.36□□□□□ -0.27
SS18-216ENST00000580751 OR51B6Q9H340 312 aa13.36□□□□□ -0.27
SS18-216ENST00000580751 TBCCD1Q9NVR7 557 aa13.36□□□□□ -0.27
SS18-216ENST00000580751 ENPP5Q9UJA9 477 aa13.36□□□□□ -0.27
SS18-216ENST00000580751 GRIP1Q9Y3R0 1128 aa13.36□□□□□ -0.27
SS18-216ENST00000580751 CMAHPQ9Y471 501 aa13.36□□□□□ -0.27
SS18-216ENST00000580751 CEPT1Q9Y6K0 416 aa13.36□□□□□ -0.27
SS18-216ENST00000580751 TRBV2A0A0J9YWF9 115 aa13.35□□□□□ -0.27
SS18-216ENST00000580751 F5H5K5 113 aa13.35□□□□□ -0.27
SS18-216ENST00000580751 M0R135 149 aa13.35□□□□□ -0.27
SS18-216ENST00000580751 SRSF10O75494 262 aaKnown RBP13.35□□□□□ -0.27
SS18-216ENST00000580751 GABARAPO95166 117 aa13.35□□□□□ -0.27
SS18-216ENST00000580751 ISG15P05161 165 aa13.35□□□□□ -0.27
SS18-216ENST00000580751 DBHP09172 617 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms