RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 DNASE1L2Q92874 299 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 SMARCD2Q92925 531 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 HIST1H2ACQ93077 130 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 SLC25A46Q96AG3 418 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 TMEM45BQ96B21 275 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 GPR146Q96CH1 333 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 REEP6Q96HR9 211 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 OR7D2Q96RA2 312 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 LYSMD1Q96S90 227 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 ZNF607Q96SK3 696 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 PITX2Q99697 317 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 HIST1H2BLQ99880 126 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 C20orf144Q9BQM9 153 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 REEP2Q9BRK0 252 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 NUDT22Q9BRQ3 303 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 PIMREGQ9BSJ6 248 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 CHRDL1Q9BU40 450 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 TAPBPLQ9BX59 468 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 RTN4RQ9BZR6 473 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 SELENOIQ9C0D9 397 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 SPATC1LQ9H0A9 340 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 ARL6Q9H0F7 186 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 RAB6CQ9H0N0 254 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 MAGT1Q9H0U3 335 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 TLNRD1Q9H1K6 362 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 OR51E2Q9H255 320 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 SYT4Q9H2B2 425 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 GEMIN7Q9H840 131 aaKnown RBP2.88□□□□□ -1.95
VPS35-208ENST00000568612 UQCC1Q9NVA1 299 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 RBM22Q9NW64 420 aaKnown RBP eCLIP2.88□□□□□ -1.95
VPS35-208ENST00000568612 MARCH5Q9NX47 278 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 TAS2R13Q9NYV9 303 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 PIPOXQ9P0Z9 390 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 MRM2Q9UI43 246 aaKnown RBP2.88□□□□□ -1.95
VPS35-208ENST00000568612 NPIPA1Q9UND3 350 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 EXO1Q9UQ84 846 aaKnown RBP2.88□□□□□ -1.95
VPS35-208ENST00000568612 OSGIN2Q9Y236 505 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 KCNK6Q9Y257 313 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 HDGFL3Q9Y3E1 203 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 TIMM10BQ9Y5J6 103 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 ORC6Q9Y5N6 252 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 UBIAD1Q9Y5Z9 338 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 HS3ST3B1Q9Y662 390 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 KPTNQ9Y664 436 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 CACNA1SQ13698 1873 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 ZFC3H1O60293 1989 aaKnown RBP2.87□□□□□ -1.95
VPS35-208ENST00000568612 PARP14Q460N5 1801 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 TRAV8-7A0A075B6U6 113 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 IGHV2OR16-5A0A0B4J2B6 119 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 TCRBV9S1A1TA0A576 114 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 TMEM213A2RRL7 107 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 YDJCA8MPS7 323 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 IDSB3KWA1 339 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 RNASEK-C17orf49H0YIS7 233 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 CORTO00230 105 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 ZNF593O00488 134 aaPredicted RBP2.87□□□□□ -1.95
VPS35-208ENST00000568612 MFNGO00587 321 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 CYB561D2O14569 222 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 SIVA1O15304 175 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 MAGEB4O15481 346 aaPredicted RBP2.87□□□□□ -1.95
VPS35-208ENST00000568612 BCL2L11O43521 198 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 KLK8O60259 260 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 PSMD10O75832 226 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 OR2A4O95047 310 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 NDUFB8O95169 186 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 RAB36O95755 333 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 TFP02787 698 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 ALDOAP04075 364 aaKnown RBP2.87□□□□□ -1.95
VPS35-208ENST00000568612 TK1P04183 234 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 CSF1P09603 554 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 OR13C7P0DN81 318 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 PNMTP11086 282 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 LIPCP11150 499 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 LAMP2P13473 410 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 CD1DP15813 335 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 GPX2P18283 190 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 KITLGP21583 273 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 IDSP22304 550 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 S100GP29377 79 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 ADORA1P30542 326 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 ARRB2P32121 409 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 AQP2P41181 271 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 ZNF140P52738 457 aaPredicted RBP2.87□□□□□ -1.95
VPS35-208ENST00000568612 PDX1P52945 283 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 PNLIPRP1P54315 467 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 RIPPLY3P57055 190 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 KRTAP10-11P60412 298 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 CKS1BP61024 79 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 TIMM10P62072 90 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 SNRPD1P62314 119 aaKnown RBP2.87□□□□□ -1.95
VPS35-208ENST00000568612 RPS15P62841 145 aaKnown RBP2.87□□□□□ -1.95
VPS35-208ENST00000568612 NAAAQ02083 359 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 EGR4Q05215 589 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 ZFP36L1Q07352 338 aaKnown RBP2.87□□□□□ -1.95
VPS35-208ENST00000568612 PJVKQ0ZLH3 352 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 PMPCAQ10713 525 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 SRSF6Q13247 344 aaKnown RBP2.87□□□□□ -1.95
VPS35-208ENST00000568612 NFATC2Q13469 925 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 HTR4Q13639 388 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 FHL1Q13642 323 aa2.87□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms