RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 RBM4BQ9BQ04 359 aaKnown RBP11.78□□□□□ -0.52
CLN3-235ENST00000568497 GABARAPL3Q9BY60 117 aa11.78□□□□□ -0.52
CLN3-235ENST00000568497 HDHD2Q9H0R4 259 aa11.78□□□□□ -0.52
CLN3-235ENST00000568497 PCDHGB1Q9Y5G3 927 aa11.78□□□□□ -0.52
CLN3-235ENST00000568497 VSTM5A8MXK1 200 aa11.77□□□□□ -0.53
CLN3-235ENST00000568497 C3orf80F5H4A9 247 aa11.77□□□□□ -0.53
CLN3-235ENST00000568497 H3BSH0 61 aa11.77□□□□□ -0.53
CLN3-235ENST00000568497 TRIM77I1YAP6 450 aa11.77□□□□□ -0.53
CLN3-235ENST00000568497 M0R135 149 aa11.77□□□□□ -0.53
CLN3-235ENST00000568497 CLIC3O95833 236 aa11.77□□□□□ -0.53
CLN3-235ENST00000568497 HLA-DPB1P04440 258 aa11.77□□□□□ -0.53
CLN3-235ENST00000568497 ANPEPP15144 967 aa11.77□□□□□ -0.53
CLN3-235ENST00000568497 PEX2P28328 305 aa11.77□□□□□ -0.53
CLN3-235ENST00000568497 MMP15P51511 669 aa11.77□□□□□ -0.53
CLN3-235ENST00000568497 EFNB1P98172 346 aa11.77□□□□□ -0.53
CLN3-235ENST00000568497 ZNF92Q03936 586 aa11.77□□□□□ -0.53
CLN3-235ENST00000568497 PCK2Q16822 640 aa11.77□□□□□ -0.53
CLN3-235ENST00000568497 GFOD2Q3B7J2 385 aa11.77□□□□□ -0.53
CLN3-235ENST00000568497 AWAT1Q58HT5 328 aa11.77□□□□□ -0.53
CLN3-235ENST00000568497 AVPI1Q5T686 147 aa11.77□□□□□ -0.53
CLN3-235ENST00000568497 AADACL4Q5VUY2 407 aa11.77□□□□□ -0.53
CLN3-235ENST00000568497 FAM57BQ71RH2 274 aa11.77□□□□□ -0.53
CLN3-235ENST00000568497 SSX6Q7RTT6 188 aa11.77□□□□□ -0.53
CLN3-235ENST00000568497 ZNF283Q8N7M2 679 aa11.77□□□□□ -0.53
CLN3-235ENST00000568497 OR10AD1Q8NGE0 317 aa11.77□□□□□ -0.53
CLN3-235ENST00000568497 TMEM163Q8TC26 289 aa11.77□□□□□ -0.53
CLN3-235ENST00000568497 FAM216AQ8WUB2 273 aa11.77□□□□□ -0.53
CLN3-235ENST00000568497 STMN2Q93045 179 aa11.77□□□□□ -0.53
CLN3-235ENST00000568497 ZNF799Q96GE5 643 aa11.77□□□□□ -0.53
CLN3-235ENST00000568497 TEAD3Q99594 435 aa11.77□□□□□ -0.53
CLN3-235ENST00000568497 RAB1BQ9H0U4 201 aa11.77□□□□□ -0.53
CLN3-235ENST00000568497 ELOVL3Q9HB03 270 aa11.77□□□□□ -0.53
CLN3-235ENST00000568497 TBCCD1Q9NVR7 557 aa11.77□□□□□ -0.53
CLN3-235ENST00000568497 SLCO1C1Q9NYB5 712 aa11.77□□□□□ -0.53
CLN3-235ENST00000568497 PURGQ9UJV8 347 aaKnown RBP11.77□□□□□ -0.53
CLN3-235ENST00000568497 TRRAPQ9Y4A5 3859 aa11.76□□□□□ -0.53
CLN3-235ENST00000568497 C17orf100A8MU93 164 aa11.76□□□□□ -0.53
CLN3-235ENST00000568497 DLGAP1O14490 977 aa11.76□□□□□ -0.53
CLN3-235ENST00000568497 TPD52L2O43399 206 aaKnown RBP11.76□□□□□ -0.53
CLN3-235ENST00000568497 TBX1O43435 398 aa11.76□□□□□ -0.53
CLN3-235ENST00000568497 IGHV3-13P01766 116 aa11.76□□□□□ -0.53
CLN3-235ENST00000568497 ANXA2P07355 339 aaKnown RBP11.76□□□□□ -0.53
CLN3-235ENST00000568497 IL2RGP31785 369 aa11.76□□□□□ -0.53
CLN3-235ENST00000568497 CX3CR1P49238 355 aa11.76□□□□□ -0.53
CLN3-235ENST00000568497 ZNF81P51508 661 aa11.76□□□□□ -0.53
CLN3-235ENST00000568497 ALDH3A2P51648 485 aa11.76□□□□□ -0.53
CLN3-235ENST00000568497 ZNF121P58317 390 aaPredicted RBP11.76□□□□□ -0.53
CLN3-235ENST00000568497 MBNL2Q5VZF2 373 aaKnown RBP11.76□□□□□ -0.53
CLN3-235ENST00000568497 ZBTB49Q6ZSB9 765 aa11.76□□□□□ -0.53
CLN3-235ENST00000568497 MEPCEQ7L2J0 689 aaKnown RBP11.76□□□□□ -0.53
CLN3-235ENST00000568497 PEG10Q86TG7 708 aaKnown RBP11.76□□□□□ -0.53
CLN3-235ENST00000568497 OR2Z1Q8NG97 314 aa11.76□□□□□ -0.53
CLN3-235ENST00000568497 OR51G2Q8NGK0 314 aa11.76□□□□□ -0.53
CLN3-235ENST00000568497 UBASH3BQ8TF42 649 aa11.76□□□□□ -0.53
CLN3-235ENST00000568497 DNAJC9Q8WXX5 260 aa11.76□□□□□ -0.53
CLN3-235ENST00000568497 EME1Q96AY2 570 aa11.76□□□□□ -0.53
CLN3-235ENST00000568497 ZNF582Q96NG8 517 aaPredicted RBP11.76□□□□□ -0.53
CLN3-235ENST00000568497 BPESC1Q9GZL8 116 aa11.76□□□□□ -0.53
CLN3-235ENST00000568497 MARCH7Q9H992 704 aa11.76□□□□□ -0.53
CLN3-235ENST00000568497 DDX28Q9NUL7 540 aaKnown RBP11.76□□□□□ -0.53
CLN3-235ENST00000568497 USE1Q9NZ43 259 aa11.76□□□□□ -0.53
CLN3-235ENST00000568497 LOC390937A0A1W2PQ73 354 aa11.75□□□□□ -0.53
CLN3-235ENST00000568497 ENTPD6O75354 484 aa11.75□□□□□ -0.53
CLN3-235ENST00000568497 ZNF205O95201 554 aa11.75□□□□□ -0.53
CLN3-235ENST00000568497 TPTEP56180 551 aa11.75□□□□□ -0.53
CLN3-235ENST00000568497 SCGB2A2Q13296 93 aa11.75□□□□□ -0.53
CLN3-235ENST00000568497 GK2Q14410 553 aaPredicted RBP11.75□□□□□ -0.53
CLN3-235ENST00000568497 DMRTC1Q5HYR2 192 aa11.75□□□□□ -0.53
CLN3-235ENST00000568497 USP51Q70EK9 711 aa11.75□□□□□ -0.53
CLN3-235ENST00000568497 OTOSQ8NHW6 89 aa11.75□□□□□ -0.53
CLN3-235ENST00000568497 SNX33Q8WV41 574 aa11.75□□□□□ -0.53
CLN3-235ENST00000568497 APOL4Q9BPW4 351 aa11.75□□□□□ -0.53
CLN3-235ENST00000568497 C1QTNF5Q9BXJ0 243 aa11.75□□□□□ -0.53
CLN3-235ENST00000568497 ADGRL4Q9HBW9 690 aa11.75□□□□□ -0.53
CLN3-235ENST00000568497 PRKDCP78527 4128 aaKnown RBP11.74□□□□□ -0.53
CLN3-235ENST00000568497 ZNF878C9JN71 531 aa11.74□□□□□ -0.53
CLN3-235ENST00000568497 E9PQ18 207 aa11.74□□□□□ -0.53
CLN3-235ENST00000568497 LYNP07948 512 aa11.74□□□□□ -0.53
CLN3-235ENST00000568497 H2BFMP0C1H6 154 aa11.74□□□□□ -0.53
CLN3-235ENST00000568497 ALOX5APP20292 161 aa11.74□□□□□ -0.53
CLN3-235ENST00000568497 PCMT1P22061 227 aa11.74□□□□□ -0.53
CLN3-235ENST00000568497 HSD11B1P28845 292 aa11.74□□□□□ -0.53
CLN3-235ENST00000568497 OPRL1P41146 370 aa11.74□□□□□ -0.53
CLN3-235ENST00000568497 EVX1P49640 407 aa11.74□□□□□ -0.53
CLN3-235ENST00000568497 SELENOVP59797 346 aa11.74□□□□□ -0.53
CLN3-235ENST00000568497 ELF3P78545 371 aaPredicted RBP11.74□□□□□ -0.53
CLN3-235ENST00000568497 MFGE8Q08431 387 aaPredicted RBP11.74□□□□□ -0.53
CLN3-235ENST00000568497 TEX30Q5JUR7 227 aa11.74□□□□□ -0.53
CLN3-235ENST00000568497 SHISA2Q6UWI4 295 aa11.74□□□□□ -0.53
CLN3-235ENST00000568497 COLCA1Q6ZS62 124 aa11.74□□□□□ -0.53
CLN3-235ENST00000568497 SLC16A9Q7RTY1 509 aa11.74□□□□□ -0.53
CLN3-235ENST00000568497 SLC35F2Q8IXU6 374 aa11.74□□□□□ -0.53
CLN3-235ENST00000568497 LINC01356Q8N9X3 169 aa11.74□□□□□ -0.53
CLN3-235ENST00000568497 ZNF540Q8NDQ6 660 aa11.74□□□□□ -0.53
CLN3-235ENST00000568497 RNF133Q8WVZ7 376 aa11.74□□□□□ -0.53
CLN3-235ENST00000568497 SPTSSAQ969W0 71 aa11.74□□□□□ -0.53
CLN3-235ENST00000568497 APOBEC3DQ96AK3 386 aaPredicted RBP11.74□□□□□ -0.53
CLN3-235ENST00000568497 HAVCR1Q96D42 359 aa11.74□□□□□ -0.53
CLN3-235ENST00000568497 KCNJ15Q99712 375 aa11.74□□□□□ -0.53
CLN3-235ENST00000568497 WACQ9BTA9 647 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms