RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 ETNK2Q9NVF9 386 aa1.05□□□□□ -2.24
VPS35-207ENST00000568191 ZNHIT6Q9NWK9 470 aaKnown RBP1.05□□□□□ -2.24
VPS35-207ENST00000568191 RAB20Q9NX57 234 aa1.05□□□□□ -2.24
VPS35-207ENST00000568191 PSMC3IPQ9P2W1 217 aaPredicted RBP1.05□□□□□ -2.24
VPS35-207ENST00000568191 NUP50Q9UKX7 468 aa1.05□□□□□ -2.24
VPS35-207ENST00000568191 KCNE3Q9Y6H6 103 aa1.05□□□□□ -2.24
VPS35-207ENST00000568191 PALLDQ8WX93 1383 aa1.05□□□□□ -2.24
VPS35-207ENST00000568191 BAZ2AQ9UIF9 1905 aaKnown RBP1.05□□□□□ -2.24
VPS35-207ENST00000568191 PLXNB1O43157 2135 aa1.04□□□□□ -2.24
VPS35-207ENST00000568191 PRR14LQ5THK1 2151 aa1.04□□□□□ -2.24
VPS35-207ENST00000568191 UNC13AQ9UPW8 1703 aa1.04□□□□□ -2.24
VPS35-207ENST00000568191 IGKV1-27A0A075B6S5 117 aa1.04□□□□□ -2.24
VPS35-207ENST00000568191 GOLGA8OA6NCC3 632 aa1.04□□□□□ -2.24
VPS35-207ENST00000568191 OR5H1A6NKK0 313 aa1.04□□□□□ -2.24
VPS35-207ENST00000568191 GOLGA8NF8WBI6 632 aa1.04□□□□□ -2.24
VPS35-207ENST00000568191 SMKR1H3BMG3 65 aa1.04□□□□□ -2.24
VPS35-207ENST00000568191 DNALI1O14645 258 aaPredicted RBP1.04□□□□□ -2.24
VPS35-207ENST00000568191 CASC3O15234 703 aaKnown RBP1.04□□□□□ -2.24
VPS35-207ENST00000568191 POLR3GO15318 223 aaPredicted RBP1.04□□□□□ -2.24
VPS35-207ENST00000568191 SPOPO43791 374 aa1.04□□□□□ -2.24
VPS35-207ENST00000568191 CDC40O60508 579 aaKnown RBP eCLIP1.04□□□□□ -2.24
VPS35-207ENST00000568191 EIF1BO60739 113 aaKnown RBP1.04□□□□□ -2.24
VPS35-207ENST00000568191 FKBP6O75344 327 aa1.04□□□□□ -2.24
VPS35-207ENST00000568191 E2F6O75461 281 aa1.04□□□□□ -2.24
VPS35-207ENST00000568191 CIB2O75838 187 aa1.04□□□□□ -2.24
VPS35-207ENST00000568191 KLHL2O95198 593 aa1.04□□□□□ -2.24
VPS35-207ENST00000568191 S100A9P06702 114 aaKnown RBP1.04□□□□□ -2.24
VPS35-207ENST00000568191 STAG3L3P0CL85 134 aa1.04□□□□□ -2.24
VPS35-207ENST00000568191 CD28P10747 220 aa1.04□□□□□ -2.24
VPS35-207ENST00000568191 ANXA8P13928 327 aa1.04□□□□□ -2.24
VPS35-207ENST00000568191 RAB3AP20336 220 aa1.04□□□□□ -2.24
VPS35-207ENST00000568191 CD9P21926 228 aa1.04□□□□□ -2.24
VPS35-207ENST00000568191 POLR2IP36954 125 aaKnown RBP1.04□□□□□ -2.24
VPS35-207ENST00000568191 MPV17P39210 176 aa1.04□□□□□ -2.24
VPS35-207ENST00000568191 CCT6AP40227 531 aaKnown RBP1.04□□□□□ -2.24
VPS35-207ENST00000568191 EIF1P41567 113 aaKnown RBP1.04□□□□□ -2.24
VPS35-207ENST00000568191 NDUFA8P51970 172 aa1.04□□□□□ -2.24
VPS35-207ENST00000568191 HADHBP55084 474 aaKnown RBP1.04□□□□□ -2.24
VPS35-207ENST00000568191 RPS23P62266 143 aaKnown RBP1.04□□□□□ -2.24
VPS35-207ENST00000568191 ELF3P78545 371 aaPredicted RBP1.04□□□□□ -2.24
VPS35-207ENST00000568191 TNFRSF9Q07011 255 aa1.04□□□□□ -2.24
VPS35-207ENST00000568191 SPAG1Q07617 926 aa1.04□□□□□ -2.24
VPS35-207ENST00000568191 DMC1Q14565 340 aa1.04□□□□□ -2.24
VPS35-207ENST00000568191 NCF4Q15080 339 aa1.04□□□□□ -2.24
VPS35-207ENST00000568191 VPS26BQ4G0F5 336 aa1.04□□□□□ -2.24
VPS35-207ENST00000568191 DEFB134Q4QY38 66 aa1.04□□□□□ -2.24
VPS35-207ENST00000568191 YIF1BQ5BJH7 314 aa1.04□□□□□ -2.24
VPS35-207ENST00000568191 PRAMEF5Q5TYX0 476 aa1.04□□□□□ -2.24
VPS35-207ENST00000568191 ANXA8L1Q5VT79 327 aa1.04□□□□□ -2.24
VPS35-207ENST00000568191 PRAMEF20Q5VT98 475 aa1.04□□□□□ -2.24
VPS35-207ENST00000568191 PRAMEF6Q5VXH4 476 aa1.04□□□□□ -2.24
VPS35-207ENST00000568191 ZFAND6Q6FIF0 208 aa1.04□□□□□ -2.24
VPS35-207ENST00000568191 ADNP2Q6IQ32 1131 aa1.04□□□□□ -2.24
VPS35-207ENST00000568191 ADM2Q7Z4H4 148 aa1.04□□□□□ -2.24
VPS35-207ENST00000568191 NANOGNBQ7Z5D8 188 aa1.04□□□□□ -2.24
VPS35-207ENST00000568191 TMCO2Q7Z6W1 182 aaPredicted RBP1.04□□□□□ -2.24
VPS35-207ENST00000568191 CMTM1Q8IZ96 169 aa1.04□□□□□ -2.24
VPS35-207ENST00000568191 ZNF321PQ8N8H1 164 aa1.04□□□□□ -2.24
VPS35-207ENST00000568191 SPERTQ8NA61 448 aa1.04□□□□□ -2.24
VPS35-207ENST00000568191 FAM184AQ8NB25 1140 aa1.04□□□□□ -2.24
VPS35-207ENST00000568191 BBOF1Q8ND07 529 aa1.04□□□□□ -2.24
VPS35-207ENST00000568191 Q8NDZ9 215 aa1.04□□□□□ -2.24
VPS35-207ENST00000568191 OR5T1Q8NG75 326 aa1.04□□□□□ -2.24
VPS35-207ENST00000568191 OR2A1Q8NGT9 310 aa1.04□□□□□ -2.24
VPS35-207ENST00000568191 MTG1Q9BT17 334 aaPredicted RBP1.04□□□□□ -2.24
VPS35-207ENST00000568191 PKIBQ9C010 78 aa1.04□□□□□ -2.24
VPS35-207ENST00000568191 SLC7A5P2Q9GIP4 190 aa1.04□□□□□ -2.24
VPS35-207ENST00000568191 ZSCAN16Q9H4T2 348 aaPredicted RBP1.04□□□□□ -2.24
VPS35-207ENST00000568191 LINC00574Q9H8X3 128 aa1.04□□□□□ -2.24
VPS35-207ENST00000568191 BEX1Q9HBH7 125 aa1.04□□□□□ -2.24
VPS35-207ENST00000568191 RETNQ9HD89 108 aa1.04□□□□□ -2.24
VPS35-207ENST00000568191 NOSIPQ9Y314 301 aaKnown RBP1.04□□□□□ -2.24
VPS35-207ENST00000568191 PHLPP2Q6ZVD8 1323 aa1.04□□□□□ -2.24
VPS35-207ENST00000568191 PCDH11XQ9BZA7 1347 aa1.04□□□□□ -2.24
VPS35-207ENST00000568191 AK9Q5TCS8 1911 aa1.03□□□□□ -2.24
VPS35-207ENST00000568191 A0A075B6Q4 140 aa1.03□□□□□ -2.24
VPS35-207ENST00000568191 IGHV7-4-1A0A0J9YVY3 117 aa1.03□□□□□ -2.24
VPS35-207ENST00000568191 A0A0J9YXV3 536 aa1.03□□□□□ -2.24
VPS35-207ENST00000568191 CEACAM18A8MTB9 384 aa1.03□□□□□ -2.24
VPS35-207ENST00000568191 NDUFS8O00217 210 aa1.03□□□□□ -2.24
VPS35-207ENST00000568191 RNF113AO15541 343 aaKnown RBP1.03□□□□□ -2.24
VPS35-207ENST00000568191 FLOT1O75955 427 aa1.03□□□□□ -2.24
VPS35-207ENST00000568191 SLC22A5O76082 557 aa1.03□□□□□ -2.24
VPS35-207ENST00000568191 GLSO94925 669 aaPredicted RBP1.03□□□□□ -2.24
VPS35-207ENST00000568191 AGTP01019 485 aa1.03□□□□□ -2.24
VPS35-207ENST00000568191 NPPAP01160 153 aa1.03□□□□□ -2.24
VPS35-207ENST00000568191 IGLV2-8P01709 118 aa1.03□□□□□ -2.24
VPS35-207ENST00000568191 UQCRFS1P1P0C7P4 283 aa1.03□□□□□ -2.24
VPS35-207ENST00000568191 ARL14EPLP0DKL9 152 aa1.03□□□□□ -2.24
VPS35-207ENST00000568191 ERGP11308 486 aa1.03□□□□□ -2.24
VPS35-207ENST00000568191 ATF6P18850 670 aa1.03□□□□□ -2.24
VPS35-207ENST00000568191 NCF2P19878 526 aaPredicted RBP1.03□□□□□ -2.24
VPS35-207ENST00000568191 U2AF2P26368 475 aaKnown RBP eCLIP1.03□□□□□ -2.24
VPS35-207ENST00000568191 CD70P32970 193 aa1.03□□□□□ -2.24
VPS35-207ENST00000568191 NAA10P41227 235 aaPredicted RBP1.03□□□□□ -2.24
VPS35-207ENST00000568191 MAGEA1P43355 309 aa1.03□□□□□ -2.24
VPS35-207ENST00000568191 SYKP43405 635 aa1.03□□□□□ -2.24
VPS35-207ENST00000568191 IDH2P48735 452 aaKnown RBP1.03□□□□□ -2.24
VPS35-207ENST00000568191 PRLHRP49683 370 aa1.03□□□□□ -2.24
VPS35-207ENST00000568191 EIF3EP60228 445 aaKnown RBP1.03□□□□□ -2.24
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms