RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 CA6P23280 308 aa14.24□□□□□ -0.13
CLN3-216ENST00000565316 RRM2P31350 389 aa14.24□□□□□ -0.13
CLN3-216ENST00000565316 HMGA2P52926 109 aa14.24□□□□□ -0.13
CLN3-216ENST00000565316 BPIFB3P59826 476 aa14.24□□□□□ -0.13
CLN3-216ENST00000565316 FGF12P61328 243 aa14.24□□□□□ -0.13
CLN3-216ENST00000565316 ZNF92Q03936 586 aa14.24□□□□□ -0.13
CLN3-216ENST00000565316 OR8G1Q15617 311 aa14.24□□□□□ -0.13
CLN3-216ENST00000565316 SAMD4BQ5PRF9 694 aaKnown RBP14.24□□□□□ -0.13
CLN3-216ENST00000565316 ZNF362Q5T0B9 420 aaPredicted RBP14.24□□□□□ -0.13
CLN3-216ENST00000565316 SLC35F1Q5T1Q4 408 aa14.24□□□□□ -0.13
CLN3-216ENST00000565316 PRAMEF6Q5VXH4 476 aa14.24□□□□□ -0.13
CLN3-216ENST00000565316 C16orf87Q6PH81 154 aa14.24□□□□□ -0.13
CLN3-216ENST00000565316 MRPL21Q7Z2W9 205 aaKnown RBP14.24□□□□□ -0.13
CLN3-216ENST00000565316 SPTSSAQ969W0 71 aa14.24□□□□□ -0.13
CLN3-216ENST00000565316 ZNF799Q96GE5 643 aa14.24□□□□□ -0.13
CLN3-216ENST00000565316 NSRP1Q9H0G5 558 aaKnown RBP14.24□□□□□ -0.13
CLN3-216ENST00000565316 SLITRK2Q9H156 845 aa14.24□□□□□ -0.13
CLN3-216ENST00000565316 UFSP2Q9NUQ7 469 aa14.24□□□□□ -0.13
CLN3-216ENST00000565316 RNF7Q9UBF6 113 aa14.24□□□□□ -0.13
CLN3-216ENST00000565316 MMP24Q9Y5R2 645 aa14.24□□□□□ -0.13
CLN3-216ENST00000565316 VWFP04275 2813 aa14.24□□□□□ -0.13
CLN3-216ENST00000565316 BHLHE40O14503 412 aa14.23□□□□□ -0.13
CLN3-216ENST00000565316 ENSAO43768 121 aaKnown RBP14.23□□□□□ -0.13
CLN3-216ENST00000565316 ZNF823P16415 610 aa14.23□□□□□ -0.13
CLN3-216ENST00000565316 ANOS1P23352 680 aa14.23□□□□□ -0.13
CLN3-216ENST00000565316 NPY4RP50391 375 aa14.23□□□□□ -0.13
CLN3-216ENST00000565316 SNAI3Q3KNW1 292 aa14.23□□□□□ -0.13
CLN3-216ENST00000565316 PGAM4Q8N0Y7 254 aa14.23□□□□□ -0.13
CLN3-216ENST00000565316 C19orf18Q8NEA5 215 aa14.23□□□□□ -0.13
CLN3-216ENST00000565316 ZNRF4Q8WWF5 429 aa14.23□□□□□ -0.13
CLN3-216ENST00000565316 NSMCE2Q96MF7 247 aa14.23□□□□□ -0.13
CLN3-216ENST00000565316 EGLN3Q9H6Z9 239 aa14.23□□□□□ -0.13
CLN3-216ENST00000565316 FN3KRPQ9HA64 309 aa14.23□□□□□ -0.13
CLN3-216ENST00000565316 MRPL15Q9P015 296 aaKnown RBP14.23□□□□□ -0.13
CLN3-216ENST00000565316 CDH10Q9Y6N8 788 aa14.23□□□□□ -0.13
CLN3-216ENST00000565316 MDFIC2A0A1B0GVS7 189 aa14.22□□□□□ -0.13
CLN3-216ENST00000565316 LGALS8O00214 317 aa14.22□□□□□ -0.13
CLN3-216ENST00000565316 HOXA3O43365 443 aaPredicted RBP14.22□□□□□ -0.13
CLN3-216ENST00000565316 KCNAB3O43448 404 aa14.22□□□□□ -0.13
CLN3-216ENST00000565316 SNX3O60493 162 aa14.22□□□□□ -0.13
CLN3-216ENST00000565316 KRT36O76013 467 aa14.22□□□□□ -0.13
CLN3-216ENST00000565316 PSKH1P11801 424 aa14.22□□□□□ -0.13
CLN3-216ENST00000565316 PYCR1P32322 319 aa14.22□□□□□ -0.13
CLN3-216ENST00000565316 MSX2P35548 267 aaPredicted RBP14.22□□□□□ -0.13
CLN3-216ENST00000565316 HOXA4Q00056 320 aaPredicted RBP14.22□□□□□ -0.13
CLN3-216ENST00000565316 KCNJ8Q15842 424 aa14.22□□□□□ -0.13
CLN3-216ENST00000565316 PCK2Q16822 640 aa14.22□□□□□ -0.13
CLN3-216ENST00000565316 DEFB112Q30KQ8 113 aa14.22□□□□□ -0.13
CLN3-216ENST00000565316 RPL13AP3Q6NVV1 102 aa14.22□□□□□ -0.13
CLN3-216ENST00000565316 DRAM2Q6UX65 266 aa14.22□□□□□ -0.13
CLN3-216ENST00000565316 BRD3OSQ6XYD6 125 aa14.22□□□□□ -0.13
CLN3-216ENST00000565316 OR2T4Q8NH00 348 aa14.22□□□□□ -0.13
CLN3-216ENST00000565316 TAF15Q92804 592 aaKnown RBP eCLIP14.22□□□□□ -0.13
CLN3-216ENST00000565316 CDRT15Q96T59 188 aa14.22□□□□□ -0.13
CLN3-216ENST00000565316 NOX4Q9NPH5 578 aa14.22□□□□□ -0.13
CLN3-216ENST00000565316 IL20Q9NYY1 176 aa14.22□□□□□ -0.13
CLN3-216ENST00000565316 CTSZQ9UBR2 303 aa14.22□□□□□ -0.13
CLN3-216ENST00000565316 TGP01266 2768 aa14.22□□□□□ -0.13
CLN3-216ENST00000565316 C5orf63A6NC05 138 aa14.21□□□□□ -0.13
CLN3-216ENST00000565316 TVP23AA6NH52 213 aa14.21□□□□□ -0.13
CLN3-216ENST00000565316 SRRM5B3KS81 715 aa14.21□□□□□ -0.13
CLN3-216ENST00000565316 LIPFP07098 398 aa14.21□□□□□ -0.13
CLN3-216ENST00000565316 RPS27P42677 84 aaKnown RBP14.21□□□□□ -0.13
CLN3-216ENST00000565316 SPATS1Q496A3 300 aa14.21□□□□□ -0.13
CLN3-216ENST00000565316 GLYATL3Q5SZD4 288 aa14.21□□□□□ -0.13
CLN3-216ENST00000565316 GPR157Q5UAW9 335 aa14.21□□□□□ -0.13
CLN3-216ENST00000565316 CD276Q5ZPR3 534 aa14.21□□□□□ -0.13
CLN3-216ENST00000565316 ZNF770Q6IQ21 691 aaPredicted RBP14.21□□□□□ -0.13
CLN3-216ENST00000565316 ZDHHC21Q8IVQ6 265 aa14.21□□□□□ -0.13
CLN3-216ENST00000565316 LINC00471Q8N535 108 aa14.21□□□□□ -0.13
CLN3-216ENST00000565316 SPERTQ8NA61 448 aa14.21□□□□□ -0.13
CLN3-216ENST00000565316 CYB561A3Q8NBI2 242 aa14.21□□□□□ -0.13
CLN3-216ENST00000565316 PROKR2Q8NFJ6 384 aa14.21□□□□□ -0.13
CLN3-216ENST00000565316 OR52L1Q8NGH7 329 aa14.21□□□□□ -0.13
CLN3-216ENST00000565316 OR2AE1Q8NHA4 323 aa14.21□□□□□ -0.13
CLN3-216ENST00000565316 TMIGD2Q96BF3 282 aa14.21□□□□□ -0.13
CLN3-216ENST00000565316 BTBD10Q9BSF8 475 aa14.21□□□□□ -0.13
CLN3-216ENST00000565316 ADAT1Q9BUB4 502 aaKnown RBP14.21□□□□□ -0.13
CLN3-216ENST00000565316 TRIM15Q9C019 465 aa14.21□□□□□ -0.13
CLN3-216ENST00000565316 TRIM36Q9NQ86 728 aa14.21□□□□□ -0.13
CLN3-216ENST00000565316 ERVK-18Q9QC07 812 aa14.21□□□□□ -0.13
CLN3-216ENST00000565316 LYVE1Q9Y5Y7 322 aa14.21□□□□□ -0.13
CLN3-216ENST00000565316 GGT3PA6NGU5 568 aa14.2□□□□□ -0.14
CLN3-216ENST00000565316 ZNF879B4DU55 563 aa14.2□□□□□ -0.14
CLN3-216ENST00000565316 P2RY10O00398 339 aa14.2□□□□□ -0.14
CLN3-216ENST00000565316 NDUFA2O43678 99 aa14.2□□□□□ -0.14
CLN3-216ENST00000565316 MMP9P14780 707 aa14.2□□□□□ -0.14
CLN3-216ENST00000565316 MDKP21741 143 aaPredicted RBP14.2□□□□□ -0.14
CLN3-216ENST00000565316 CFHR2P36980 270 aa14.2□□□□□ -0.14
CLN3-216ENST00000565316 TEX30Q5JUR7 227 aa14.2□□□□□ -0.14
CLN3-216ENST00000565316 LYPD4Q6UWN0 246 aa14.2□□□□□ -0.14
CLN3-216ENST00000565316 Q6YL49 198 aa14.2□□□□□ -0.14
CLN3-216ENST00000565316 LNX2Q8N448 690 aa14.2□□□□□ -0.14
CLN3-216ENST00000565316 TMEM86BQ8N661 226 aa14.2□□□□□ -0.14
CLN3-216ENST00000565316 OR8D4Q8NGM9 314 aa14.2□□□□□ -0.14
CLN3-216ENST00000565316 ZDHHC16Q969W1 377 aa14.2□□□□□ -0.14
CLN3-216ENST00000565316 NMNAT2Q9BZQ4 307 aa14.2□□□□□ -0.14
CLN3-216ENST00000565316 OPA3Q9H6K4 179 aa14.2□□□□□ -0.14
CLN3-216ENST00000565316 COMMD3-BMI1R4GMX3 469 aa14.2□□□□□ -0.14
CLN3-216ENST00000565316 TRAV38-1A0A0B4J264 116 aa14.19□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms