RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 SORCS2Q96PQ0 1159 aa8.18□□□□□ -1.1
VPS39-205ENST00000562258 MED28Q9H204 178 aa8.18□□□□□ -1.1
VPS39-205ENST00000562258 CLEC4MQ9H2X3 399 aaPredicted RBP8.18□□□□□ -1.1
VPS39-205ENST00000562258 SLC25A19Q9HC21 320 aa8.18□□□□□ -1.1
VPS39-205ENST00000562258 FLVCR1Q9Y5Y0 555 aa8.18□□□□□ -1.1
VPS39-205ENST00000562258 ZG16O60844 167 aa8.18□□□□□ -1.1
VPS39-205ENST00000562258 ZNF254O75437 659 aa8.18□□□□□ -1.1
VPS39-205ENST00000562258 NEURL1O76050 574 aa8.18□□□□□ -1.1
VPS39-205ENST00000562258 TP53P04637 393 aaPredicted RBP8.18□□□□□ -1.1
VPS39-205ENST00000562258 GLI4P10075 376 aa8.18□□□□□ -1.1
VPS39-205ENST00000562258 RPA2P15927 270 aa8.18□□□□□ -1.1
VPS39-205ENST00000562258 GPM6AP51674 278 aa8.18□□□□□ -1.1
VPS39-205ENST00000562258 SUCLG1P53597 346 aaKnown RBP8.18□□□□□ -1.1
VPS39-205ENST00000562258 C19orf57Q0VDD7 668 aa8.18□□□□□ -1.1
VPS39-205ENST00000562258 PCK2Q16822 640 aa8.18□□□□□ -1.1
VPS39-205ENST00000562258 SSX6Q7RTT6 188 aa8.18□□□□□ -1.1
VPS39-205ENST00000562258 NUFIP2Q7Z417 695 aaKnown RBP8.18□□□□□ -1.1
VPS39-205ENST00000562258 ELMOD2Q8IZ81 293 aa8.18□□□□□ -1.1
VPS39-205ENST00000562258 OR5H2Q8NGV7 314 aa8.18□□□□□ -1.1
VPS39-205ENST00000562258 ZPLD1Q8TCW7 415 aa8.18□□□□□ -1.1
VPS39-205ENST00000562258 TECTBQ96PL2 329 aa8.18□□□□□ -1.1
VPS39-205ENST00000562258 ZNF703Q9H7S9 590 aaPredicted RBP8.18□□□□□ -1.1
VPS39-205ENST00000562258 PALMDQ9NP74 551 aa8.18□□□□□ -1.1
VPS39-205ENST00000562258 TXNL4BQ9NX01 149 aaKnown RBP8.18□□□□□ -1.1
VPS39-205ENST00000562258 PRSS23O95084 383 aa8.17□□□□□ -1.1
VPS39-205ENST00000562258 ZIC2O95409 532 aaPredicted RBP8.17□□□□□ -1.1
VPS39-205ENST00000562258 PMS2P2O95744 297 aa8.17□□□□□ -1.1
VPS39-205ENST00000562258 BGLAPP02818 100 aa8.17□□□□□ -1.1
VPS39-205ENST00000562258 RAC2P15153 192 aa8.17□□□□□ -1.1
VPS39-205ENST00000562258 GNB2P62879 340 aa8.17□□□□□ -1.1
VPS39-205ENST00000562258 PCGF3Q3KNV8 242 aa8.17□□□□□ -1.1
VPS39-205ENST00000562258 NCCRP1Q6ZVX7 275 aaPredicted RBP8.17□□□□□ -1.1
VPS39-205ENST00000562258 COMTD1Q86VU5 262 aa8.17□□□□□ -1.1
VPS39-205ENST00000562258 OR52N1Q8NH53 320 aa8.17□□□□□ -1.1
VPS39-205ENST00000562258 C15orf40Q8WUR7 153 aa8.17□□□□□ -1.1
VPS39-205ENST00000562258 PTP4A1Q93096 173 aa8.17□□□□□ -1.1
VPS39-205ENST00000562258 CMBLQ96DG6 245 aa8.17□□□□□ -1.1
VPS39-205ENST00000562258 PRSS27Q9BQR3 290 aa8.17□□□□□ -1.1
VPS39-205ENST00000562258 SF3B5Q9BWJ5 86 aaKnown RBP8.17□□□□□ -1.1
VPS39-205ENST00000562258 FAIMQ9NVQ4 179 aa8.17□□□□□ -1.1
VPS39-205ENST00000562258 B3GAT1Q9P2W7 334 aa8.17□□□□□ -1.1
VPS39-205ENST00000562258 SCN8AQ9UQD0 1980 aa8.17□□□□□ -1.1
VPS39-205ENST00000562258 LOC102723996A0A087X1L8 192 aa8.17□□□□□ -1.1
VPS39-205ENST00000562258 DISC1C4P0D8 188 aa8.17□□□□□ -1.1
VPS39-205ENST00000562258 SPRY1O43609 319 aaPredicted RBP8.17□□□□□ -1.1
VPS39-205ENST00000562258 ENSAO43768 121 aaKnown RBP8.17□□□□□ -1.1
VPS39-205ENST00000562258 TGM6O95932 706 aa8.17□□□□□ -1.1
VPS39-205ENST00000562258 SRMP19623 302 aa8.17□□□□□ -1.1
VPS39-205ENST00000562258 GABRA5P31644 462 aa8.17□□□□□ -1.1
VPS39-205ENST00000562258 UBE2UQ5VVX9 321 aa8.17□□□□□ -1.1
VPS39-205ENST00000562258 PHC2Q8IXK0 858 aa8.17□□□□□ -1.1
VPS39-205ENST00000562258 ZNF808Q8N4W9 903 aaPredicted RBP8.17□□□□□ -1.1
VPS39-205ENST00000562258 BOD1Q96IK1 185 aa8.17□□□□□ -1.1
VPS39-205ENST00000562258 OR8B4Q96RC9 309 aa8.17□□□□□ -1.1
VPS39-205ENST00000562258 SRXN1Q9BYN0 137 aa8.17□□□□□ -1.1
VPS39-205ENST00000562258 GLRX2Q9NS18 164 aa8.17□□□□□ -1.1
VPS39-205ENST00000562258 FKBP14Q9NWM8 211 aa8.17□□□□□ -1.1
VPS39-205ENST00000562258 TAAR3PQ9P1P4 343 aa8.17□□□□□ -1.1
VPS39-205ENST00000562258 ZMIZ1Q9ULJ6 1067 aa8.17□□□□□ -1.1
VPS39-205ENST00000562258 UBE2J1Q9Y385 318 aaPredicted RBP8.17□□□□□ -1.1
VPS39-205ENST00000562258 PINLYPA6NC86 204 aa8.17□□□□□ -1.1
VPS39-205ENST00000562258 DEGS1O15121 323 aa8.17□□□□□ -1.1
VPS39-205ENST00000562258 AKR7A2O43488 359 aa8.17□□□□□ -1.1
VPS39-205ENST00000562258 EPPINO95925 133 aa8.17□□□□□ -1.1
VPS39-205ENST00000562258 SFTPBP07988 381 aa8.17□□□□□ -1.1
VPS39-205ENST00000562258 CCL8P80075 99 aa8.17□□□□□ -1.1
VPS39-205ENST00000562258 CDK5Q00535 292 aa8.17□□□□□ -1.1
VPS39-205ENST00000562258 Q0VFX4 171 aa8.17□□□□□ -1.1
VPS39-205ENST00000562258 IGFBP7Q16270 282 aa8.17□□□□□ -1.1
VPS39-205ENST00000562258 VWA1Q6PCB0 445 aa8.17□□□□□ -1.1
VPS39-205ENST00000562258 CROCCP3Q8IVE0 287 aa8.17□□□□□ -1.1
VPS39-205ENST00000562258 ZNF420Q8TAQ5 688 aaPredicted RBP8.17□□□□□ -1.1
VPS39-205ENST00000562258 LGALS14Q8TCE9 139 aa8.17□□□□□ -1.1
VPS39-205ENST00000562258 ASB10Q8WXI3 467 aa8.17□□□□□ -1.1
VPS39-205ENST00000562258 KCNJ15Q99712 375 aa8.17□□□□□ -1.1
VPS39-205ENST00000562258 C12orf10Q9HB07 376 aa8.17□□□□□ -1.1
VPS39-205ENST00000562258 ETAA1Q9NY74 926 aa8.17□□□□□ -1.1
VPS39-205ENST00000562258 NEUROG3Q9Y4Z2 214 aa8.17□□□□□ -1.1
VPS39-205ENST00000562258 DCTN6O00399 190 aa8.16□□□□□ -1.1
VPS39-205ENST00000562258 ORC5O43913 435 aa8.16□□□□□ -1.1
VPS39-205ENST00000562258 NGFRP08138 427 aa8.16□□□□□ -1.1
VPS39-205ENST00000562258 TDGF1P13385 188 aa8.16□□□□□ -1.1
VPS39-205ENST00000562258 RBMXP38159 391 aaKnown RBP8.16□□□□□ -1.1
VPS39-205ENST00000562258 KLF3P57682 345 aaPredicted RBP8.16□□□□□ -1.1
VPS39-205ENST00000562258 HES1Q14469 280 aa8.16□□□□□ -1.1
VPS39-205ENST00000562258 MDP1Q86V88 176 aa8.16□□□□□ -1.1
VPS39-205ENST00000562258 NANOGP1Q8N7R0 232 aa8.16□□□□□ -1.1
VPS39-205ENST00000562258 CPEB3Q8NE35 698 aaKnown RBP8.16□□□□□ -1.1
VPS39-205ENST00000562258 RAB3CQ96E17 227 aa8.16□□□□□ -1.1
VPS39-205ENST00000562258 NPAS1Q99742 590 aa8.16□□□□□ -1.1
VPS39-205ENST00000562258 BARHL1Q9BZE3 327 aa8.16□□□□□ -1.1
VPS39-205ENST00000562258 OR10A4Q9H209 315 aa8.16□□□□□ -1.1
VPS39-205ENST00000562258 MAN2C1Q9NTJ4 1040 aa8.16□□□□□ -1.1
VPS39-205ENST00000562258 ZNF69Q9UC07 566 aa8.16□□□□□ -1.1
VPS39-205ENST00000562258 ZNF391Q9UJN7 358 aa8.16□□□□□ -1.1
VPS39-205ENST00000562258 R4GMQ9 66 aa8.16□□□□□ -1.1
VPS39-205ENST00000562258 LTBP2Q14767 1821 aa8.16□□□□□ -1.1
VPS39-205ENST00000562258 A0A0B4J203 849 aa8.16□□□□□ -1.1
VPS39-205ENST00000562258 H3BMQ9 156 aa8.16□□□□□ -1.1
VPS39-205ENST00000562258 MPPED1O15442 326 aa8.16□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms