RNA–Protein interactions for RNA: ENST00000561026.5

SNX1-213, Transcript of sorting nexin 1, humanhuman

TSL 1 (best) BASIC

Gene SNX1, Length 1,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-213ENST00000561026 NDE1Q9NXR1 346 aa13.54□□□□□ -0.24
SNX1-213ENST00000561026 ARL2BPQ9Y2Y0 163 aa13.54□□□□□ -0.24
SNX1-213ENST00000561026 IGHV3OR16-10A0A075B7F0 116 aa13.53□□□□□ -0.24
SNX1-213ENST00000561026 TVP23AA6NH52 213 aa13.53□□□□□ -0.24
SNX1-213ENST00000561026 CD300LBA8K4G0 201 aa13.53□□□□□ -0.24
SNX1-213ENST00000561026 CLDN34H7C241 214 aa13.53□□□□□ -0.24
SNX1-213ENST00000561026 TNFRSF11BO00300 401 aa13.53□□□□□ -0.24
SNX1-213ENST00000561026 FAM20BO75063 409 aa13.53□□□□□ -0.24
SNX1-213ENST00000561026 PLATP00750 562 aa13.53□□□□□ -0.24
SNX1-213ENST00000561026 GASTP01350 101 aa13.53□□□□□ -0.24
SNX1-213ENST00000561026 CA6P23280 308 aa13.53□□□□□ -0.24
SNX1-213ENST00000561026 OTX1P32242 354 aaPredicted RBP13.53□□□□□ -0.24
SNX1-213ENST00000561026 ZNF92Q03936 586 aa13.53□□□□□ -0.24
SNX1-213ENST00000561026 OR8G1Q15617 311 aa13.53□□□□□ -0.24
SNX1-213ENST00000561026 MPPED2Q15777 294 aa13.53□□□□□ -0.24
SNX1-213ENST00000561026 SNAI3Q3KNW1 292 aa13.53□□□□□ -0.24
SNX1-213ENST00000561026 LYPD2Q6UXB3 125 aa13.53□□□□□ -0.24
SNX1-213ENST00000561026 OR4C15Q8NGM1 316 aa13.53□□□□□ -0.24
SNX1-213ENST00000561026 ZNF747Q9BV97 191 aa13.53□□□□□ -0.24
SNX1-213ENST00000561026 UFSP2Q9NUQ7 469 aa13.53□□□□□ -0.24
SNX1-213ENST00000561026 CLN8Q9UBY8 286 aa13.53□□□□□ -0.24
SNX1-213ENST00000561026 NOP16Q9Y3C1 178 aaKnown RBP13.53□□□□□ -0.24
SNX1-213ENST00000561026 DOCK11Q5JSL3 2073 aa13.53□□□□□ -0.24
SNX1-213ENST00000561026 GMDSO60547 372 aa13.52□□□□□ -0.25
SNX1-213ENST00000561026 RNASE1P07998 156 aaKnown RBP13.52□□□□□ -0.25
SNX1-213ENST00000561026 PSKH1P11801 424 aa13.52□□□□□ -0.25
SNX1-213ENST00000561026 PSMB10P40306 273 aa13.52□□□□□ -0.25
SNX1-213ENST00000561026 MTNR1AP48039 350 aa13.52□□□□□ -0.25
SNX1-213ENST00000561026 PRAMEF6Q5VXH4 476 aa13.52□□□□□ -0.25
SNX1-213ENST00000561026 WDR25Q64LD2 544 aaPredicted RBP13.52□□□□□ -0.25
SNX1-213ENST00000561026 LYPD4Q6UWN0 246 aa13.52□□□□□ -0.25
SNX1-213ENST00000561026 DRAM2Q6UX65 266 aa13.52□□□□□ -0.25
SNX1-213ENST00000561026 CYP2R1Q6VVX0 501 aa13.52□□□□□ -0.25
SNX1-213ENST00000561026 ZNF841Q6ZN19 808 aa13.52□□□□□ -0.25
SNX1-213ENST00000561026 RASSF6Q6ZTQ3 369 aa13.52□□□□□ -0.25
SNX1-213ENST00000561026 DCXRQ7Z4W1 244 aa13.52□□□□□ -0.25
SNX1-213ENST00000561026 PIGWQ7Z7B1 504 aa13.52□□□□□ -0.25
SNX1-213ENST00000561026 LNX2Q8N448 690 aa13.52□□□□□ -0.25
SNX1-213ENST00000561026 PLPP7Q8NBV4 271 aa13.52□□□□□ -0.25
SNX1-213ENST00000561026 SLC37A3Q8NCC5 494 aa13.52□□□□□ -0.25
SNX1-213ENST00000561026 C19orf18Q8NEA5 215 aa13.52□□□□□ -0.25
SNX1-213ENST00000561026 OR51L1Q8NGJ5 315 aa13.52□□□□□ -0.25
SNX1-213ENST00000561026 OR8D4Q8NGM9 314 aa13.52□□□□□ -0.25
SNX1-213ENST00000561026 SLC25A28Q96A46 364 aa13.52□□□□□ -0.25
SNX1-213ENST00000561026 NUDT16L1Q9BRJ7 211 aaKnown RBP13.52□□□□□ -0.25
SNX1-213ENST00000561026 ACTR3BQ9P1U1 418 aa13.52□□□□□ -0.25
SNX1-213ENST00000561026 PCDHGB1Q9Y5G3 927 aa13.52□□□□□ -0.25
SNX1-213ENST00000561026 SOX21Q9Y651 276 aaPredicted RBP13.52□□□□□ -0.25
SNX1-213ENST00000561026 C5orf63A6NC05 138 aa13.51□□□□□ -0.25
SNX1-213ENST00000561026 PHYHO14832 338 aa13.51□□□□□ -0.25
SNX1-213ENST00000561026 DCTN3O75935 186 aa13.51□□□□□ -0.25
SNX1-213ENST00000561026 CCNB2O95067 398 aa13.51□□□□□ -0.25
SNX1-213ENST00000561026 PTBP3O95758 552 aaKnown RBP13.51□□□□□ -0.25
SNX1-213ENST00000561026 ANOS1P23352 680 aa13.51□□□□□ -0.25
SNX1-213ENST00000561026 MAGEA2P43356 314 aa13.51□□□□□ -0.25
SNX1-213ENST00000561026 MXRA7P84157 204 aa13.51□□□□□ -0.25
SNX1-213ENST00000561026 SLC9A3R2Q15599 337 aa13.51□□□□□ -0.25
SNX1-213ENST00000561026 PCK2Q16822 640 aa13.51□□□□□ -0.25
SNX1-213ENST00000561026 GLYATL3Q5SZD4 288 aa13.51□□□□□ -0.25
SNX1-213ENST00000561026 FITM2Q8N6M3 262 aa13.51□□□□□ -0.25
SNX1-213ENST00000561026 OR9Q1Q8NGQ5 310 aa13.51□□□□□ -0.25
SNX1-213ENST00000561026 OR2AE1Q8NHA4 323 aa13.51□□□□□ -0.25
SNX1-213ENST00000561026 COPS4Q9BT78 406 aa13.51□□□□□ -0.25
SNX1-213ENST00000561026 FN3KRPQ9HA64 309 aa13.51□□□□□ -0.25
SNX1-213ENST00000561026 MRPL15Q9P015 296 aaKnown RBP13.51□□□□□ -0.25
SNX1-213ENST00000561026 RNF7Q9UBF6 113 aa13.51□□□□□ -0.25
SNX1-213ENST00000561026 COMMD3-BMI1R4GMX3 469 aa13.51□□□□□ -0.25
SNX1-213ENST00000561026 PKD1L1Q8TDX9 2849 aa13.51□□□□□ -0.25
SNX1-213ENST00000561026 TRAV40A0A0B4J280 105 aa13.5□□□□□ -0.25
SNX1-213ENST00000561026 GGT3PA6NGU5 568 aa13.5□□□□□ -0.25
SNX1-213ENST00000561026 ATP6V1B2P21281 511 aa13.5□□□□□ -0.25
SNX1-213ENST00000561026 FMO3P31513 532 aa13.5□□□□□ -0.25
SNX1-213ENST00000561026 MNAT1P51948 309 aa13.5□□□□□ -0.25
SNX1-213ENST00000561026 GYS2P54840 703 aa13.5□□□□□ -0.25
SNX1-213ENST00000561026 GNGT1P63211 74 aa13.5□□□□□ -0.25
SNX1-213ENST00000561026 HOXA4Q00056 320 aaPredicted RBP13.5□□□□□ -0.25
SNX1-213ENST00000561026 SHISA2Q6UWI4 295 aa13.5□□□□□ -0.25
SNX1-213ENST00000561026 ZNF511Q8NB15 262 aa13.5□□□□□ -0.25
SNX1-213ENST00000561026 AQP11Q8NBQ7 271 aa13.5□□□□□ -0.25
SNX1-213ENST00000561026 ADAT1Q9BUB4 502 aaKnown RBP13.5□□□□□ -0.25
SNX1-213ENST00000561026 TSSK6Q9BXA6 273 aa13.5□□□□□ -0.25
SNX1-213ENST00000561026 NMNAT2Q9BZQ4 307 aa13.5□□□□□ -0.25
SNX1-213ENST00000561026 TBC1D23Q9NUY8 699 aa13.5□□□□□ -0.25
SNX1-213ENST00000561026 C22orf46C9J442 243 aa13.49□□□□□ -0.25
SNX1-213ENST00000561026 ZNF593O00488 134 aaPredicted RBP13.49□□□□□ -0.25
SNX1-213ENST00000561026 TMPRSS2O15393 492 aa13.49□□□□□ -0.25
SNX1-213ENST00000561026 GYPBP06028 91 aa13.49□□□□□ -0.25
SNX1-213ENST00000561026 SPARCP09486 303 aa13.49□□□□□ -0.25
SNX1-213ENST00000561026 ENTPD1P49961 510 aa13.49□□□□□ -0.25
SNX1-213ENST00000561026 NPY4RP50391 375 aa13.49□□□□□ -0.25
SNX1-213ENST00000561026 PRKXP51817 358 aa13.49□□□□□ -0.25
SNX1-213ENST00000561026 SLC25A1P53007 311 aa13.49□□□□□ -0.25
SNX1-213ENST00000561026 FGF12P61328 243 aa13.49□□□□□ -0.25
SNX1-213ENST00000561026 PPP1R8Q12972 351 aaKnown RBP13.49□□□□□ -0.25
SNX1-213ENST00000561026 CRMP1Q14194 572 aa13.49□□□□□ -0.25
SNX1-213ENST00000561026 TAF13Q15543 124 aa13.49□□□□□ -0.25
SNX1-213ENST00000561026 KCNJ8Q15842 424 aa13.49□□□□□ -0.25
SNX1-213ENST00000561026 TEX30Q5JUR7 227 aa13.49□□□□□ -0.25
SNX1-213ENST00000561026 SFRP4Q6FHJ7 346 aaPredicted RBP13.49□□□□□ -0.25
SNX1-213ENST00000561026 SPERTQ8NA61 448 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms