RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 DDOQ99489 341 aa4.51□□□□□ -1.69
LDLR-209ENST00000558528 TEAD3Q99594 435 aa4.51□□□□□ -1.69
LDLR-209ENST00000558528 BCL7BQ9BQE9 202 aa4.51□□□□□ -1.69
LDLR-209ENST00000558528 AIFM2Q9BRQ8 373 aa4.51□□□□□ -1.69
LDLR-209ENST00000558528 WACQ9BTA9 647 aa4.51□□□□□ -1.69
LDLR-209ENST00000558528 MND1Q9BWT6 205 aa4.51□□□□□ -1.69
LDLR-209ENST00000558528 CDCA4Q9BXL8 241 aa4.51□□□□□ -1.69
LDLR-209ENST00000558528 TTTY12Q9BZ98 90 aa4.51□□□□□ -1.69
LDLR-209ENST00000558528 PLA2G12AQ9BZM1 189 aa4.51□□□□□ -1.69
LDLR-209ENST00000558528 EXO5Q9H790 373 aa4.51□□□□□ -1.69
LDLR-209ENST00000558528 SRD5A3Q9H8P0 318 aa4.51□□□□□ -1.69
LDLR-209ENST00000558528 RNF122Q9H9V4 155 aa4.51□□□□□ -1.69
LDLR-209ENST00000558528 ISYNA1Q9NPH2 558 aa4.51□□□□□ -1.69
LDLR-209ENST00000558528 FKBP14Q9NWM8 211 aa4.51□□□□□ -1.69
LDLR-209ENST00000558528 PARPBPQ9NWS1 579 aa4.51□□□□□ -1.69
LDLR-209ENST00000558528 TAS2R5Q9NYW4 299 aa4.51□□□□□ -1.69
LDLR-209ENST00000558528 ZNF346Q9UL40 294 aaKnown RBP4.51□□□□□ -1.69
LDLR-209ENST00000558528 MCTS1Q9ULC4 181 aaKnown RBP4.51□□□□□ -1.69
LDLR-209ENST00000558528 NPIPA1Q9UND3 350 aa4.51□□□□□ -1.69
LDLR-209ENST00000558528 DIMT1Q9UNQ2 313 aaKnown RBP4.51□□□□□ -1.69
LDLR-209ENST00000558528 EXOGQ9Y2C4 368 aaKnown RBP4.51□□□□□ -1.69
LDLR-209ENST00000558528 FKBP7Q9Y680 259 aa4.51□□□□□ -1.69
LDLR-209ENST00000558528 HIVEP3Q5T1R4 2406 aa4.51□□□□□ -1.69
LDLR-209ENST00000558528 RP1P56715 2156 aa4.5□□□□□ -1.69
LDLR-209ENST00000558528 SCN3AQ9NY46 2000 aa4.5□□□□□ -1.69
LDLR-209ENST00000558528 TRGV5A0A0B4J1U4 118 aa4.5□□□□□ -1.69
LDLR-209ENST00000558528 TMEM129A0AVI4 362 aa4.5□□□□□ -1.69
LDLR-209ENST00000558528 PRSS37A4D1T9 235 aa4.5□□□□□ -1.69
LDLR-209ENST00000558528 DPPA5A6NC42 116 aa4.5□□□□□ -1.69
LDLR-209ENST00000558528 NPIPA2E9PIF3 369 aa4.5□□□□□ -1.69
LDLR-209ENST00000558528 C11orf98E9PRG8 122 aa4.5□□□□□ -1.69
LDLR-209ENST00000558528 NPIPA3F8WFD2 350 aa4.5□□□□□ -1.69
LDLR-209ENST00000558528 MS4A18H0YCH9 400 aa4.5□□□□□ -1.69
LDLR-209ENST00000558528 VCYO14598 125 aa4.5□□□□□ -1.69
LDLR-209ENST00000558528 ARHGEF9O43307 516 aa4.5□□□□□ -1.69
LDLR-209ENST00000558528 XPNPEP2O43895 674 aa4.5□□□□□ -1.69
LDLR-209ENST00000558528 KHDRBS3O75525 346 aaKnown RBP4.5□□□□□ -1.69
LDLR-209ENST00000558528 IGHG1P01857 330 aa4.5□□□□□ -1.69
LDLR-209ENST00000558528 IGFBP1P08833 259 aaPredicted RBP4.5□□□□□ -1.69
LDLR-209ENST00000558528 STSP08842 583 aa4.5□□□□□ -1.69
LDLR-209ENST00000558528 HOXD4P09016 255 aaPredicted RBP4.5□□□□□ -1.69
LDLR-209ENST00000558528 OR2T7P0C7T2 308 aa4.5□□□□□ -1.69
LDLR-209ENST00000558528 CPN1P15169 458 aa4.5□□□□□ -1.69
LDLR-209ENST00000558528 AREGP15514 252 aa4.5□□□□□ -1.69
LDLR-209ENST00000558528 HIST1H1CP16403 213 aaKnown RBP4.5□□□□□ -1.69
LDLR-209ENST00000558528 ZNF823P16415 610 aa4.5□□□□□ -1.69
LDLR-209ENST00000558528 SFTPDP35247 375 aa4.5□□□□□ -1.69
LDLR-209ENST00000558528 PTGER4P35408 488 aa4.5□□□□□ -1.69
LDLR-209ENST00000558528 ACVR1BP36896 505 aa4.5□□□□□ -1.69
LDLR-209ENST00000558528 ALDH3B2P48448 385 aa4.5□□□□□ -1.69
LDLR-209ENST00000558528 GTF2A1P52655 376 aaPredicted RBP4.5□□□□□ -1.69
LDLR-209ENST00000558528 FXYD6P3P58550 94 aa4.5□□□□□ -1.69
LDLR-209ENST00000558528 TAS2R43P59537 309 aa4.5□□□□□ -1.69
LDLR-209ENST00000558528 ACTA2P62736 377 aa4.5□□□□□ -1.69
LDLR-209ENST00000558528 ACTG2P63267 376 aa4.5□□□□□ -1.69
LDLR-209ENST00000558528 H3F3AP84243 136 aa4.5□□□□□ -1.69
LDLR-209ENST00000558528 ADORA2A-AS1P86434 159 aa4.5□□□□□ -1.69
LDLR-209ENST00000558528 HSF1Q00613 529 aa4.5□□□□□ -1.69
LDLR-209ENST00000558528 GLO1Q04760 184 aa4.5□□□□□ -1.69
LDLR-209ENST00000558528 ZNF91Q05481 1191 aa4.5□□□□□ -1.69
LDLR-209ENST00000558528 SPOCK1Q08629 439 aa4.5□□□□□ -1.69
LDLR-209ENST00000558528 SCGB2A2Q13296 93 aa4.5□□□□□ -1.69
LDLR-209ENST00000558528 GPR50Q13585 617 aa4.5□□□□□ -1.69
LDLR-209ENST00000558528 KRR1Q13601 381 aaKnown RBP4.5□□□□□ -1.69
LDLR-209ENST00000558528 APOFQ13790 326 aa4.5□□□□□ -1.69
LDLR-209ENST00000558528 ZNF169Q14929 603 aaPredicted RBP4.5□□□□□ -1.69
LDLR-209ENST00000558528 MS4A18Q3C1V0 323 aa4.5□□□□□ -1.69
LDLR-209ENST00000558528 KLHL12Q53G59 568 aa4.5□□□□□ -1.69
LDLR-209ENST00000558528 SYT6Q5T7P8 510 aaPredicted RBP4.5□□□□□ -1.69
LDLR-209ENST00000558528 RIPPLY2Q5TAB7 128 aa4.5□□□□□ -1.69
LDLR-209ENST00000558528 EEF1A1P5Q5VTE0 462 aa4.5□□□□□ -1.69
LDLR-209ENST00000558528 UBE2UQ5VVX9 321 aa4.5□□□□□ -1.69
LDLR-209ENST00000558528 LEG1Q6P5S2 330 aa4.5□□□□□ -1.69
LDLR-209ENST00000558528 MEX3BQ6ZN04 569 aaKnown RBP4.5□□□□□ -1.69
LDLR-209ENST00000558528 GDPGP1Q6ZNW5 385 aa4.5□□□□□ -1.69
LDLR-209ENST00000558528 TMEM182Q6ZP80 229 aaPredicted RBP4.5□□□□□ -1.69
LDLR-209ENST00000558528 AHSA2Q719I0 299 aa4.5□□□□□ -1.69
LDLR-209ENST00000558528 SLC35D2Q76EJ3 337 aa4.5□□□□□ -1.69
LDLR-209ENST00000558528 ZNF367Q7RTV3 350 aa4.5□□□□□ -1.69
LDLR-209ENST00000558528 FAM122BQ7Z309 247 aa4.5□□□□□ -1.69
LDLR-209ENST00000558528 YRDCQ86U90 279 aaKnown RBP4.5□□□□□ -1.69
LDLR-209ENST00000558528 CCDC190Q86UF4 302 aa4.5□□□□□ -1.69
LDLR-209ENST00000558528 NOXA1Q86UR1 476 aa4.5□□□□□ -1.69
LDLR-209ENST00000558528 CCDC71Q8IV32 467 aaPredicted RBP4.5□□□□□ -1.69
LDLR-209ENST00000558528 PARP16Q8N5Y8 322 aa4.5□□□□□ -1.69
LDLR-209ENST00000558528 TMEM251Q8N6I4 163 aa4.5□□□□□ -1.69
LDLR-209ENST00000558528 IQCF1Q8N6M8 205 aa4.5□□□□□ -1.69
LDLR-209ENST00000558528 ACBD7Q8N6N7 88 aa4.5□□□□□ -1.69
LDLR-209ENST00000558528 LRRC17Q8N6Y2 441 aa4.5□□□□□ -1.69
LDLR-209ENST00000558528 LRRC75AQ8NAA5 344 aa4.5□□□□□ -1.69
LDLR-209ENST00000558528 SLC37A3Q8NCC5 494 aa4.5□□□□□ -1.69
LDLR-209ENST00000558528 NPEPL1Q8NDH3 523 aa4.5□□□□□ -1.69
LDLR-209ENST00000558528 OR8D4Q8NGM9 314 aa4.5□□□□□ -1.69
LDLR-209ENST00000558528 OR1J2Q8NGS2 313 aa4.5□□□□□ -1.69
LDLR-209ENST00000558528 OR2T27Q8NH04 317 aa4.5□□□□□ -1.69
LDLR-209ENST00000558528 OR4K13Q8NH42 304 aa4.5□□□□□ -1.69
LDLR-209ENST00000558528 OR6X1Q8NH79 312 aa4.5□□□□□ -1.69
LDLR-209ENST00000558528 APH1BQ8WW43 257 aa4.5□□□□□ -1.69
LDLR-209ENST00000558528 ASB17Q8WXJ9 295 aa4.5□□□□□ -1.69
LDLR-209ENST00000558528 MOB3AQ96BX8 217 aa4.5□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms