RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 MEGF11A6BM72 1044 aa11.2□□□□□ -0.62
SHMT2-229ENST00000557348 OR5H15A6NDH6 313 aa11.2□□□□□ -0.62
SHMT2-229ENST00000557348 ACOD1A6NK06 481 aa11.2□□□□□ -0.62
SHMT2-229ENST00000557348 ANXA2P2A6NMY6 339 aa11.2□□□□□ -0.62
SHMT2-229ENST00000557348 ZNF814B7Z6K7 855 aa11.2□□□□□ -0.62
SHMT2-229ENST00000557348 MCRIP1C9JLW8 97 aa11.2□□□□□ -0.62
SHMT2-229ENST00000557348 MASP2O00187 686 aa11.2□□□□□ -0.62
SHMT2-229ENST00000557348 EIF1AYO14602 144 aaKnown RBP11.2□□□□□ -0.62
SHMT2-229ENST00000557348 APOC1P02654 83 aa11.2□□□□□ -0.62
SHMT2-229ENST00000557348 EIF4EP06730 217 aaKnown RBP11.2□□□□□ -0.62
SHMT2-229ENST00000557348 ANXA2P07355 339 aaKnown RBP11.2□□□□□ -0.62
SHMT2-229ENST00000557348 CD46P15529 392 aa11.2□□□□□ -0.62
SHMT2-229ENST00000557348 FSTP19883 344 aa11.2□□□□□ -0.62
SHMT2-229ENST00000557348 RPS27P42677 84 aaKnown RBP11.2□□□□□ -0.62
SHMT2-229ENST00000557348 KIR3DL2P43630 455 aa11.2□□□□□ -0.62
SHMT2-229ENST00000557348 GFRA1P56159 465 aa11.2□□□□□ -0.62
SHMT2-229ENST00000557348 OR10A3P58181 314 aa11.2□□□□□ -0.62
SHMT2-229ENST00000557348 GRB2P62993 217 aaKnown RBP11.2□□□□□ -0.62
SHMT2-229ENST00000557348 BTN1A1Q13410 526 aa11.2□□□□□ -0.62
SHMT2-229ENST00000557348 HYAL4Q2M3T9 481 aa11.2□□□□□ -0.62
SHMT2-229ENST00000557348 CLVS2Q5SYC1 327 aa11.2□□□□□ -0.62
SHMT2-229ENST00000557348 ABLIM2Q6H8Q1 611 aa11.2□□□□□ -0.62
SHMT2-229ENST00000557348 LIN54Q6MZP7 749 aa11.2□□□□□ -0.62
SHMT2-229ENST00000557348 GLDNQ6ZMI3 551 aaPredicted RBP11.2□□□□□ -0.62
SHMT2-229ENST00000557348 STAC2Q6ZMT1 411 aa11.2□□□□□ -0.62
SHMT2-229ENST00000557348 LRRC69Q6ZNQ3 347 aa11.2□□□□□ -0.62
SHMT2-229ENST00000557348 FOXL2NBQ6ZUU3 175 aa11.2□□□□□ -0.62
SHMT2-229ENST00000557348 YRDCQ86U90 279 aaKnown RBP11.2□□□□□ -0.62
SHMT2-229ENST00000557348 SIAH3Q8IW03 269 aa11.2□□□□□ -0.62
SHMT2-229ENST00000557348 RAB40AQ8WXH6 277 aa11.2□□□□□ -0.62
SHMT2-229ENST00000557348 RELTQ969Z4 430 aa11.2□□□□□ -0.62
SHMT2-229ENST00000557348 SLAMF6Q96DU3 332 aa11.2□□□□□ -0.62
SHMT2-229ENST00000557348 ABHD1Q96SE0 405 aa11.2□□□□□ -0.62
SHMT2-229ENST00000557348 C20orf85Q9H1P6 137 aa11.2□□□□□ -0.62
SHMT2-229ENST00000557348 NELFAQ9H3P2 528 aa11.2□□□□□ -0.62
SHMT2-229ENST00000557348 SEC61A2Q9H9S3 476 aa11.2□□□□□ -0.62
SHMT2-229ENST00000557348 BRD7Q9NPI1 651 aa11.2□□□□□ -0.62
SHMT2-229ENST00000557348 DEPPQ9NTK1 212 aa11.2□□□□□ -0.62
SHMT2-229ENST00000557348 PCNX3Q9H6A9 2034 aa11.2□□□□□ -0.62
SHMT2-229ENST00000557348 USP34Q70CQ2 3546 aa11.2□□□□□ -0.62
SHMT2-229ENST00000557348 A0A0G2JMM0 328 aa11.2□□□□□ -0.62
SHMT2-229ENST00000557348 SPAARA0A1B0GVQ0 90 aa11.2□□□□□ -0.62
SHMT2-229ENST00000557348 TMEM269A0A1B0GVZ9 245 aa11.2□□□□□ -0.62
SHMT2-229ENST00000557348 A0A1W2PPB8 328 aa11.2□□□□□ -0.62
SHMT2-229ENST00000557348 A0A1W2PRS3 328 aa11.2□□□□□ -0.62
SHMT2-229ENST00000557348 PQLC2LA1A4F0 135 aa11.2□□□□□ -0.62
SHMT2-229ENST00000557348 KIR3DP1A8MWS1 328 aa11.2□□□□□ -0.62
SHMT2-229ENST00000557348 G3V3Q6 166 aa11.2□□□□□ -0.62
SHMT2-229ENST00000557348 TEX46H3BTG2 121 aa11.2□□□□□ -0.62
SHMT2-229ENST00000557348 GABARAPH6UMI1 98 aa11.2□□□□□ -0.62
SHMT2-229ENST00000557348 PIN1P1O15428 100 aa11.2□□□□□ -0.62
SHMT2-229ENST00000557348 NME2P1O60361 137 aa11.2□□□□□ -0.62
SHMT2-229ENST00000557348 CREBL2O60519 120 aaPredicted RBP11.2□□□□□ -0.62
SHMT2-229ENST00000557348 SRSF10O75494 262 aaKnown RBP11.2□□□□□ -0.62
SHMT2-229ENST00000557348 MSR1P21757 451 aa11.2□□□□□ -0.62
SHMT2-229ENST00000557348 NME2P22392 152 aa11.2□□□□□ -0.62
SHMT2-229ENST00000557348 MFAP5Q13361 173 aa11.2□□□□□ -0.62
SHMT2-229ENST00000557348 SPINK14Q6IE38 97 aa11.2□□□□□ -0.62
SHMT2-229ENST00000557348 SLC25A25Q6KCM7 469 aa11.2□□□□□ -0.62
SHMT2-229ENST00000557348 GGNQ86UU5 652 aa11.2□□□□□ -0.62
SHMT2-229ENST00000557348 TMEM17Q86X19 198 aa11.2□□□□□ -0.62
SHMT2-229ENST00000557348 TMEM123Q8N131 208 aa11.2□□□□□ -0.62
SHMT2-229ENST00000557348 MEIOBQ8N635 442 aa11.2□□□□□ -0.62
SHMT2-229ENST00000557348 SREK1IP1Q8N9Q2 155 aaPredicted RBP11.2□□□□□ -0.62
SHMT2-229ENST00000557348 ADGRG7Q96K78 797 aa11.2□□□□□ -0.62
SHMT2-229ENST00000557348 FOXN4Q96NZ1 517 aa11.2□□□□□ -0.62
SHMT2-229ENST00000557348 CCDC86Q9H6F5 360 aaKnown RBP11.2□□□□□ -0.62
SHMT2-229ENST00000557348 METTL17Q9H7H0 456 aaPredicted RBP11.2□□□□□ -0.62
SHMT2-229ENST00000557348 ASCL3Q9NQ33 180 aa11.2□□□□□ -0.62
SHMT2-229ENST00000557348 GDF2Q9UK05 429 aaPredicted RBP11.2□□□□□ -0.62
SHMT2-229ENST00000557348 OR52A1Q9UKL2 312 aa11.2□□□□□ -0.62
SHMT2-229ENST00000557348 GTF2A1LQ9UNN4 478 aa11.2□□□□□ -0.62
SHMT2-229ENST00000557348 AK6Q9Y3D8 172 aaKnown RBP11.2□□□□□ -0.62
SHMT2-229ENST00000557348 RIF1Q5UIP0 2472 aaKnown RBP11.2□□□□□ -0.62
SHMT2-229ENST00000557348 VPS13AQ96RL7 3174 aa11.19□□□□□ -0.62
SHMT2-229ENST00000557348 IGKV1D-43A0A0B4J1Z2 117 aa11.19□□□□□ -0.62
SHMT2-229ENST00000557348 A0A1W2PPK0 400 aa11.19□□□□□ -0.62
SHMT2-229ENST00000557348 NUDT19A8MXV4 375 aa11.19□□□□□ -0.62
SHMT2-229ENST00000557348 ACOT7O00154 380 aa11.19□□□□□ -0.62
SHMT2-229ENST00000557348 SMAD9O15198 467 aaKnown RBP11.19□□□□□ -0.62
SHMT2-229ENST00000557348 LANCL1O43813 399 aa11.19□□□□□ -0.62
SHMT2-229ENST00000557348 MPZL1O95297 269 aa11.19□□□□□ -0.62
SHMT2-229ENST00000557348 ATF1P18846 271 aa11.19□□□□□ -0.62
SHMT2-229ENST00000557348 HSD11B1P28845 292 aa11.19□□□□□ -0.62
SHMT2-229ENST00000557348 FAUP35544 74 aaKnown RBP11.19□□□□□ -0.62
SHMT2-229ENST00000557348 PSMA6P60900 246 aaKnown RBP11.19□□□□□ -0.62
SHMT2-229ENST00000557348 STK11Q15831 433 aa11.19□□□□□ -0.62
SHMT2-229ENST00000557348 SLC25A35Q3KQZ1 300 aa11.19□□□□□ -0.62
SHMT2-229ENST00000557348 PABPC1L2AQ5JQF8 200 aa11.19□□□□□ -0.62
SHMT2-229ENST00000557348 WIPI1Q5MNZ9 446 aaPredicted RBP11.19□□□□□ -0.62
SHMT2-229ENST00000557348 RIPPLY2Q5TAB7 128 aa11.19□□□□□ -0.62
SHMT2-229ENST00000557348 ZNF433Q8N7K0 673 aaPredicted RBP11.19□□□□□ -0.62
SHMT2-229ENST00000557348 TMEM178AQ8NBL3 297 aa11.19□□□□□ -0.62
SHMT2-229ENST00000557348 OR5M9Q8NGP3 310 aa11.19□□□□□ -0.62
SHMT2-229ENST00000557348 LINC00052Q96N35 136 aa11.19□□□□□ -0.62
SHMT2-229ENST00000557348 ULBP2Q9BZM5 246 aa11.19□□□□□ -0.62
SHMT2-229ENST00000557348 SCPEP1Q9HB40 452 aa11.19□□□□□ -0.62
SHMT2-229ENST00000557348 FOXD3Q9UJU5 478 aaPredicted RBP11.19□□□□□ -0.62
SHMT2-229ENST00000557348 EMC9Q9Y3B6 208 aa11.19□□□□□ -0.62
SHMT2-229ENST00000557348 UBE2QL1A1L167 161 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms