RNA–Protein interactions for RNA: ENST00000556412.4

VIPAS39-208, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,832 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-208ENST00000556412 OR8B12Q8NGG6 310 aa12.06□□□□□ -0.48
VIPAS39-208ENST00000556412 PELI1Q96FA3 418 aa12.06□□□□□ -0.48
VIPAS39-208ENST00000556412 DUSP21Q9H596 190 aa12.06□□□□□ -0.48
VIPAS39-208ENST00000556412 ZNF319Q9P2F9 582 aa12.06□□□□□ -0.48
VIPAS39-208ENST00000556412 SLC22A13Q9Y226 551 aa12.06□□□□□ -0.48
VIPAS39-208ENST00000556412 LRCH1Q9Y2L9 728 aa12.06□□□□□ -0.48
VIPAS39-208ENST00000556412 SNX5Q9Y5X3 404 aa12.06□□□□□ -0.48
VIPAS39-208ENST00000556412 HECTD1Q9ULT8 2610 aa12.06□□□□□ -0.48
VIPAS39-208ENST00000556412 XRCC2O43543 280 aa12.05□□□□□ -0.48
VIPAS39-208ENST00000556412 TIMM8AO60220 97 aaPredicted RBP12.05□□□□□ -0.48
VIPAS39-208ENST00000556412 HTR1AP08908 422 aa12.05□□□□□ -0.48
VIPAS39-208ENST00000556412 GBX2P52951 348 aaPredicted RBP12.05□□□□□ -0.48
VIPAS39-208ENST00000556412 ZNF92Q03936 586 aa12.05□□□□□ -0.48
VIPAS39-208ENST00000556412 GK2Q14410 553 aaPredicted RBP12.05□□□□□ -0.48
VIPAS39-208ENST00000556412 C20orf204Q6ZNR8 217 aa12.05□□□□□ -0.48
VIPAS39-208ENST00000556412 KLBQ86Z14 1044 aa12.05□□□□□ -0.48
VIPAS39-208ENST00000556412 BHLHE23Q8NDY6 225 aa12.05□□□□□ -0.48
VIPAS39-208ENST00000556412 REEP6Q96HR9 211 aa12.05□□□□□ -0.48
VIPAS39-208ENST00000556412 MOB1AQ9H8S9 216 aa12.05□□□□□ -0.48
VIPAS39-208ENST00000556412 MYEF2Q9P2K5 600 aaKnown RBP12.05□□□□□ -0.48
VIPAS39-208ENST00000556412 E9PI62 339 aa12.04□□□□□ -0.48
VIPAS39-208ENST00000556412 H3BSH0 61 aa12.04□□□□□ -0.48
VIPAS39-208ENST00000556412 SRSF10O75494 262 aaKnown RBP12.04□□□□□ -0.48
VIPAS39-208ENST00000556412 SNRPD2P62316 118 aaKnown RBP12.04□□□□□ -0.48
VIPAS39-208ENST00000556412 PSG7Q13046 419 aa12.04□□□□□ -0.48
VIPAS39-208ENST00000556412 NKPD1Q17RQ9 610 aa12.04□□□□□ -0.48
VIPAS39-208ENST00000556412 WDR38Q5JTN6 314 aa12.04□□□□□ -0.48
VIPAS39-208ENST00000556412 MBNL2Q5VZF2 373 aaKnown RBP12.04□□□□□ -0.48
VIPAS39-208ENST00000556412 OR2T2Q6IF00 324 aa12.04□□□□□ -0.48
VIPAS39-208ENST00000556412 OR5AS1Q8N127 324 aa12.04□□□□□ -0.48
VIPAS39-208ENST00000556412 SGK3Q96BR1 496 aa12.04□□□□□ -0.48
VIPAS39-208ENST00000556412 CCL19Q99731 98 aa12.04□□□□□ -0.48
VIPAS39-208ENST00000556412 MND1Q9BWT6 205 aa12.04□□□□□ -0.48
VIPAS39-208ENST00000556412 DYNLRB1Q9NP97 96 aa12.04□□□□□ -0.48
VIPAS39-208ENST00000556412 TAAR3PQ9P1P4 343 aa12.04□□□□□ -0.48
VIPAS39-208ENST00000556412 NUFIP1Q9UHK0 495 aaKnown RBP12.04□□□□□ -0.48
VIPAS39-208ENST00000556412 GGT3PA6NGU5 568 aa12.04□□□□□ -0.48
VIPAS39-208ENST00000556412 B9A039 149 aa12.04□□□□□ -0.48
VIPAS39-208ENST00000556412 ZNF250P15622 560 aa12.04□□□□□ -0.48
VIPAS39-208ENST00000556412 TUBG1P23258 451 aa12.04□□□□□ -0.48
VIPAS39-208ENST00000556412 ALDH3B1P43353 468 aa12.04□□□□□ -0.48
VIPAS39-208ENST00000556412 GTF2A1P52655 376 aaPredicted RBP12.04□□□□□ -0.48
VIPAS39-208ENST00000556412 CDH15P55291 814 aa12.04□□□□□ -0.48
VIPAS39-208ENST00000556412 GABARAPL2P60520 117 aa12.04□□□□□ -0.48
VIPAS39-208ENST00000556412 FBXW12Q6X9E4 464 aa12.04□□□□□ -0.48
VIPAS39-208ENST00000556412 PRSS48Q7RTY5 328 aa12.04□□□□□ -0.48
VIPAS39-208ENST00000556412 CATSPERDQ86XM0 798 aa12.04□□□□□ -0.48
VIPAS39-208ENST00000556412 OR52N1Q8NH53 320 aa12.04□□□□□ -0.48
VIPAS39-208ENST00000556412 OR51E1Q8TCB6 317 aa12.04□□□□□ -0.48
VIPAS39-208ENST00000556412 FAM71F1Q96KD3 344 aaPredicted RBP12.04□□□□□ -0.48
VIPAS39-208ENST00000556412 CDCA4Q9BXL8 241 aa12.04□□□□□ -0.48
VIPAS39-208ENST00000556412 YTHDF1Q9BYJ9 559 aaKnown RBP12.04□□□□□ -0.48
VIPAS39-208ENST00000556412 G6PC2Q9NQR9 355 aa12.04□□□□□ -0.48
VIPAS39-208ENST00000556412 TUBG2Q9NRH3 451 aa12.04□□□□□ -0.48
VIPAS39-208ENST00000556412 CBLN4Q9NTU7 201 aa12.04□□□□□ -0.48
VIPAS39-208ENST00000556412 PLEKHA6Q9Y2H5 1048 aa12.04□□□□□ -0.48
VIPAS39-208ENST00000556412 PRR14LQ5THK1 2151 aa12.03□□□□□ -0.48
VIPAS39-208ENST00000556412 TMEM129A0AVI4 362 aa12.03□□□□□ -0.48
VIPAS39-208ENST00000556412 ACOD1A6NK06 481 aa12.03□□□□□ -0.48
VIPAS39-208ENST00000556412 P2RY10O00398 339 aa12.03□□□□□ -0.48
VIPAS39-208ENST00000556412 TTRP02766 147 aa12.03□□□□□ -0.48
VIPAS39-208ENST00000556412 DANCRP0C864 163 aa12.03□□□□□ -0.48
VIPAS39-208ENST00000556412 RAC2P15153 192 aa12.03□□□□□ -0.48
VIPAS39-208ENST00000556412 MAP2K4P45985 399 aa12.03□□□□□ -0.48
VIPAS39-208ENST00000556412 CHN2P52757 468 aa12.03□□□□□ -0.48
VIPAS39-208ENST00000556412 WNT4P56705 351 aa12.03□□□□□ -0.48
VIPAS39-208ENST00000556412 NANOS3P60323 173 aaKnown RBP12.03□□□□□ -0.48
VIPAS39-208ENST00000556412 MED22Q15528 200 aa12.03□□□□□ -0.48
VIPAS39-208ENST00000556412 XAF1Q6GPH4 301 aa12.03□□□□□ -0.48
VIPAS39-208ENST00000556412 ELMOD2Q8IZ81 293 aa12.03□□□□□ -0.48
VIPAS39-208ENST00000556412 PRSS35Q8N3Z0 413 aa12.03□□□□□ -0.48
VIPAS39-208ENST00000556412 NANOGP1Q8N7R0 232 aa12.03□□□□□ -0.48
VIPAS39-208ENST00000556412 ZFP41Q8N8Y5 198 aa12.03□□□□□ -0.48
VIPAS39-208ENST00000556412 OR2G2Q8NGZ5 317 aa12.03□□□□□ -0.48
VIPAS39-208ENST00000556412 HAVCR1Q96D42 359 aa12.03□□□□□ -0.48
VIPAS39-208ENST00000556412 TRIM36Q9NQ86 728 aa12.03□□□□□ -0.48
VIPAS39-208ENST00000556412 GPR84Q9NQS5 396 aa12.03□□□□□ -0.48
VIPAS39-208ENST00000556412 BABAM2Q9NXR7 383 aa12.03□□□□□ -0.48
VIPAS39-208ENST00000556412 FRRS1LQ9P0K9 344 aa12.03□□□□□ -0.48
VIPAS39-208ENST00000556412 PURGQ9UJV8 347 aaKnown RBP12.03□□□□□ -0.48
VIPAS39-208ENST00000556412 PTPN13Q12923 2485 aa12.02□□□□□ -0.48
VIPAS39-208ENST00000556412 PNMA8CA0A1B0GUJ8 204 aa12.02□□□□□ -0.48
VIPAS39-208ENST00000556412 PLSCR5A0PG75 271 aa12.02□□□□□ -0.48
VIPAS39-208ENST00000556412 H3BSA7 217 aa12.02□□□□□ -0.48
VIPAS39-208ENST00000556412 BMP4P12644 408 aa12.02□□□□□ -0.48
VIPAS39-208ENST00000556412 CFL1P23528 166 aaKnown RBP12.02□□□□□ -0.48
VIPAS39-208ENST00000556412 KIR3DL2P43630 455 aa12.02□□□□□ -0.48
VIPAS39-208ENST00000556412 MRPL28Q13084 256 aaKnown RBP12.02□□□□□ -0.48
VIPAS39-208ENST00000556412 EFNB3Q15768 340 aa12.02□□□□□ -0.48
VIPAS39-208ENST00000556412 MST1LQ2TV78 715 aa12.02□□□□□ -0.48
VIPAS39-208ENST00000556412 TMEM255AQ5JRV8 349 aa12.02□□□□□ -0.48
VIPAS39-208ENST00000556412 PAMR1Q6UXH9 720 aa12.02□□□□□ -0.48
VIPAS39-208ENST00000556412 RDH10Q8IZV5 341 aa12.02□□□□□ -0.48
VIPAS39-208ENST00000556412 ZNF676Q8N7Q3 588 aa12.02□□□□□ -0.48
VIPAS39-208ENST00000556412 RNF166Q96A37 237 aaPredicted RBP12.02□□□□□ -0.48
VIPAS39-208ENST00000556412 LYZL4Q96KX0 146 aa12.02□□□□□ -0.48
VIPAS39-208ENST00000556412 SOX7Q9BT81 388 aa12.02□□□□□ -0.48
VIPAS39-208ENST00000556412 TRAF4Q9BUZ4 470 aaPredicted RBP12.02□□□□□ -0.48
VIPAS39-208ENST00000556412 RGCCQ9H4X1 137 aa12.02□□□□□ -0.48
VIPAS39-208ENST00000556412 IGLV3-9A0A075B6K5 115 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms