RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 PIGCQ92535 297 aa13.29□□□□□ -0.28
CUX1-215ENST00000556210 RGP1Q92546 391 aaPredicted RBP13.29□□□□□ -0.28
CUX1-215ENST00000556210 ZC3H10Q96K80 434 aaKnown RBP13.29□□□□□ -0.28
CUX1-215ENST00000556210 GPR160Q9UJ42 338 aa13.29□□□□□ -0.28
CUX1-215ENST00000556210 PLPP3O14495 311 aa13.28□□□□□ -0.28
CUX1-215ENST00000556210 TIAF1O95411 115 aa13.28□□□□□ -0.28
CUX1-215ENST00000556210 MTCP1P56278 107 aa13.28□□□□□ -0.28
CUX1-215ENST00000556210 PRSS35Q8N3Z0 413 aa13.28□□□□□ -0.28
CUX1-215ENST00000556210 GALNT16Q8N428 558 aa13.28□□□□□ -0.28
CUX1-215ENST00000556210 ESX1Q8N693 406 aa13.28□□□□□ -0.28
CUX1-215ENST00000556210 EDAQ92838 391 aa13.28□□□□□ -0.28
CUX1-215ENST00000556210 LIN37Q96GY3 246 aaPredicted RBP13.28□□□□□ -0.28
CUX1-215ENST00000556210 PBOV1Q9GZY1 135 aa13.28□□□□□ -0.28
CUX1-215ENST00000556210 DNTTIP1Q9H147 329 aa13.28□□□□□ -0.28
CUX1-215ENST00000556210 HEXA-AS1Q9H8Q6 139 aa13.28□□□□□ -0.28
CUX1-215ENST00000556210 ARPC4-TTLL3A0A0A6YYG9 625 aa13.28□□□□□ -0.28
CUX1-215ENST00000556210 SLC17A2O00624 439 aa13.28□□□□□ -0.28
CUX1-215ENST00000556210 HOXD4P09016 255 aaPredicted RBP13.28□□□□□ -0.28
CUX1-215ENST00000556210 OR4E1P0C645 316 aa13.28□□□□□ -0.28
CUX1-215ENST00000556210 KIR3DL2P43630 455 aa13.28□□□□□ -0.28
CUX1-215ENST00000556210 PLAURQ03405 335 aa13.28□□□□□ -0.28
CUX1-215ENST00000556210 BVESQ8NE79 360 aa13.28□□□□□ -0.28
CUX1-215ENST00000556210 ARL11Q969Q4 196 aa13.28□□□□□ -0.28
CUX1-215ENST00000556210 ZNF845Q96IR2 970 aaPredicted RBP13.28□□□□□ -0.28
CUX1-215ENST00000556210 OCIAD1Q9NX40 245 aa13.28□□□□□ -0.28
CUX1-215ENST00000556210 GDF2Q9UK05 429 aaPredicted RBP13.28□□□□□ -0.28
CUX1-215ENST00000556210 FANCMQ8IYD8 2048 aa13.28□□□□□ -0.28
CUX1-215ENST00000556210 IL5P05113 134 aa13.28□□□□□ -0.28
CUX1-215ENST00000556210 CCL4P13236 92 aa13.28□□□□□ -0.28
CUX1-215ENST00000556210 FAHP16930 419 aa13.28□□□□□ -0.28
CUX1-215ENST00000556210 ZNF16P17020 682 aaPredicted RBP13.28□□□□□ -0.28
CUX1-215ENST00000556210 TCN2P20062 427 aa13.28□□□□□ -0.28
CUX1-215ENST00000556210 CSF2RBP32927 897 aa13.28□□□□□ -0.28
CUX1-215ENST00000556210 CX3CR1P49238 355 aa13.28□□□□□ -0.28
CUX1-215ENST00000556210 ZNF121P58317 390 aaPredicted RBP13.28□□□□□ -0.28
CUX1-215ENST00000556210 IL10RAQ13651 578 aa13.28□□□□□ -0.28
CUX1-215ENST00000556210 HLA-BQ31612 363 aa13.28□□□□□ -0.28
CUX1-215ENST00000556210 MEX3BQ6ZN04 569 aaKnown RBP13.28□□□□□ -0.28
CUX1-215ENST00000556210 EVA1AQ9H8M9 152 aa13.28□□□□□ -0.28
CUX1-215ENST00000556210 LANCL2Q9NS86 450 aa13.28□□□□□ -0.28
CUX1-215ENST00000556210 OPN4Q9UHM6 478 aa13.28□□□□□ -0.28
CUX1-215ENST00000556210 OR5H14A6NHG9 310 aa13.27□□□□□ -0.28
CUX1-215ENST00000556210 GSTZ1O43708 216 aaPredicted RBP13.27□□□□□ -0.28
CUX1-215ENST00000556210 LDOC1O95751 146 aaPredicted RBP13.27□□□□□ -0.28
CUX1-215ENST00000556210 SLC25A1P53007 311 aa13.27□□□□□ -0.28
CUX1-215ENST00000556210 DMWDQ09019 674 aa13.27□□□□□ -0.28
CUX1-215ENST00000556210 ZNF273Q14593 569 aa13.27□□□□□ -0.28
CUX1-215ENST00000556210 EMC4Q5J8M3 183 aa13.27□□□□□ -0.28
CUX1-215ENST00000556210 CDC20BQ86Y33 519 aa13.27□□□□□ -0.28
CUX1-215ENST00000556210 C20orf196Q8IYI0 205 aa13.27□□□□□ -0.28
CUX1-215ENST00000556210 ZFP82Q8N141 532 aa13.27□□□□□ -0.28
CUX1-215ENST00000556210 C2CD4CQ8TF44 421 aa13.27□□□□□ -0.28
CUX1-215ENST00000556210 HRH4Q9H3N8 390 aa13.27□□□□□ -0.28
CUX1-215ENST00000556210 A0A1W2PP11 408 aa13.27□□□□□ -0.29
CUX1-215ENST00000556210 ANKRD20A5PA0PJZ0 165 aa13.27□□□□□ -0.29
CUX1-215ENST00000556210 H3BMH7 237 aa13.27□□□□□ -0.29
CUX1-215ENST00000556210 UPK3AO75631 287 aa13.27□□□□□ -0.29
CUX1-215ENST00000556210 WISP1O95388 367 aa13.27□□□□□ -0.29
CUX1-215ENST00000556210 GDF1P27539 372 aa13.27□□□□□ -0.29
CUX1-215ENST00000556210 HNF4GQ14541 408 aa13.27□□□□□ -0.29
CUX1-215ENST00000556210 ELFN2Q5R3F8 820 aa13.27□□□□□ -0.29
CUX1-215ENST00000556210 ZNF585AQ6P3V2 769 aa13.27□□□□□ -0.29
CUX1-215ENST00000556210 LRRTM1Q86UE6 522 aa13.27□□□□□ -0.29
CUX1-215ENST00000556210 SLC22A24Q8N4F4 322 aa13.27□□□□□ -0.29
CUX1-215ENST00000556210 IL22RA1Q8N6P7 574 aa13.27□□□□□ -0.29
CUX1-215ENST00000556210 SLC38A9Q8NBW4 561 aa13.27□□□□□ -0.29
CUX1-215ENST00000556210 ALKBH3Q96Q83 286 aaPredicted RBP13.27□□□□□ -0.29
CUX1-215ENST00000556210 R4GMQ9 66 aa13.27□□□□□ -0.29
CUX1-215ENST00000556210 RALGAPA1Q6GYQ0 2036 aa13.27□□□□□ -0.29
CUX1-215ENST00000556210 LYPD3O95274 346 aa13.27□□□□□ -0.29
CUX1-215ENST00000556210 ASAH2BP0C7U1 165 aa13.27□□□□□ -0.29
CUX1-215ENST00000556210 GAAP10253 952 aa13.27□□□□□ -0.29
CUX1-215ENST00000556210 PXKQ7Z7A4 578 aa13.27□□□□□ -0.29
CUX1-215ENST00000556210 RPS19BP1Q86WX3 136 aaKnown RBP13.27□□□□□ -0.29
CUX1-215ENST00000556210 AGBL5Q8NDL9 886 aa13.27□□□□□ -0.29
CUX1-215ENST00000556210 OR1M1Q8NGA1 313 aa13.27□□□□□ -0.29
CUX1-215ENST00000556210 MARC2Q969Z3 335 aa13.27□□□□□ -0.29
CUX1-215ENST00000556210 CNTNAP3BQ96NU0 1288 aa13.27□□□□□ -0.29
CUX1-215ENST00000556210 CNTD2Q9H8S5 307 aa13.27□□□□□ -0.29
CUX1-215ENST00000556210 GPR173Q9NS66 373 aa13.27□□□□□ -0.29
CUX1-215ENST00000556210 ESPL1Q14674 2120 aa13.26□□□□□ -0.29
CUX1-215ENST00000556210 M0R036 132 aa13.26□□□□□ -0.29
CUX1-215ENST00000556210 RBMXL2O75526 392 aaKnown RBP13.26□□□□□ -0.29
CUX1-215ENST00000556210 EDN3P14138 238 aa13.26□□□□□ -0.29
CUX1-215ENST00000556210 RPS11P62280 158 aaKnown RBP eCLIP13.26□□□□□ -0.29
CUX1-215ENST00000556210 PDSS1Q5T2R2 415 aa13.26□□□□□ -0.29
CUX1-215ENST00000556210 SLC26A10Q8NG04 563 aa13.26□□□□□ -0.29
CUX1-215ENST00000556210 OR2AE1Q8NHA4 323 aa13.26□□□□□ -0.29
CUX1-215ENST00000556210 MVB12AQ96EY5 273 aa13.26□□□□□ -0.29
CUX1-215ENST00000556210 TMEM231Q9H6L2 316 aa13.26□□□□□ -0.29
CUX1-215ENST00000556210 LOC101059948A0A1B0GTJ6 334 aa13.26□□□□□ -0.29
CUX1-215ENST00000556210 H7C417 338 aa13.26□□□□□ -0.29
CUX1-215ENST00000556210 CD79AP11912 226 aa13.26□□□□□ -0.29
CUX1-215ENST00000556210 APOBEC1P41238 236 aaKnown RBP13.26□□□□□ -0.29
CUX1-215ENST00000556210 TAF9Q16594 264 aa13.26□□□□□ -0.29
CUX1-215ENST00000556210 MOGAT2Q3SYC2 334 aa13.26□□□□□ -0.29
CUX1-215ENST00000556210 STPG2Q8N412 459 aa13.26□□□□□ -0.29
CUX1-215ENST00000556210 RNF128Q8TEB7 428 aa13.26□□□□□ -0.29
CUX1-215ENST00000556210 ROBO4Q8WZ75 1007 aa13.26□□□□□ -0.29
CUX1-215ENST00000556210 CDC6Q99741 560 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms