RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 B9D2Q9BPU9 175 aa10.51□□□□□ -0.73
VPS29-211ENST00000553128 TMEM109Q9BVC6 243 aa10.51□□□□□ -0.73
VPS29-211ENST00000553128 HCAR1Q9BXC0 346 aa10.51□□□□□ -0.73
VPS29-211ENST00000553128 RERGLQ9H628 205 aa10.51□□□□□ -0.73
VPS29-211ENST00000553128 ZNF702PQ9H963 129 aa10.51□□□□□ -0.73
VPS29-211ENST00000553128 GAR1Q9NY12 217 aaKnown RBP10.51□□□□□ -0.73
VPS29-211ENST00000553128 ADA2Q9NZK5 511 aa10.51□□□□□ -0.73
VPS29-211ENST00000553128 KAAG1Q9UBP8 84 aa10.51□□□□□ -0.73
VPS29-211ENST00000553128 COA3Q9Y2R0 106 aaPredicted RBP10.51□□□□□ -0.73
VPS29-211ENST00000553128 HYDINQ4G0P3 5121 aa10.5□□□□□ -0.73
VPS29-211ENST00000553128 RGS16O15492 202 aaPredicted RBP10.5□□□□□ -0.73
VPS29-211ENST00000553128 LHBP01229 141 aa10.5□□□□□ -0.73
VPS29-211ENST00000553128 SELLP14151 372 aa10.5□□□□□ -0.73
VPS29-211ENST00000553128 ZNF26P17031 533 aaPredicted RBP10.5□□□□□ -0.73
VPS29-211ENST00000553128 RPL4P36578 427 aaKnown RBP10.5□□□□□ -0.73
VPS29-211ENST00000553128 OR1E2P47887 323 aa10.5□□□□□ -0.73
VPS29-211ENST00000553128 MRPL19P49406 292 aaKnown RBP10.5□□□□□ -0.73
VPS29-211ENST00000553128 VSNL1P62760 191 aa10.5□□□□□ -0.73
VPS29-211ENST00000553128 MEP1BQ16820 701 aa10.5□□□□□ -0.73
VPS29-211ENST00000553128 TEX36Q5VZQ5 186 aa10.5□□□□□ -0.73
VPS29-211ENST00000553128 HCP5Q6MZN7 132 aa10.5□□□□□ -0.73
VPS29-211ENST00000553128 ZSCAN2Q7Z7L9 614 aaPredicted RBP10.5□□□□□ -0.73
VPS29-211ENST00000553128 PATL1Q86TB9 770 aaKnown RBP10.5□□□□□ -0.73
VPS29-211ENST00000553128 OR13C2Q8NGS9 318 aa10.5□□□□□ -0.73
VPS29-211ENST00000553128 SLC26A7Q8TE54 656 aa10.5□□□□□ -0.73
VPS29-211ENST00000553128 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP10.5□□□□□ -0.73
VPS29-211ENST00000553128 ZNF583Q96ND8 569 aa10.5□□□□□ -0.73
VPS29-211ENST00000553128 NKX3-1Q99801 234 aaPredicted RBP10.5□□□□□ -0.73
VPS29-211ENST00000553128 ADAT1Q9BUB4 502 aaKnown RBP10.5□□□□□ -0.73
VPS29-211ENST00000553128 RANBP3Q9H6Z4 567 aaPredicted RBP10.5□□□□□ -0.73
VPS29-211ENST00000553128 ATPIF1Q9UII2 106 aa10.5□□□□□ -0.73
VPS29-211ENST00000553128 LHFPL6Q9Y693 200 aa10.5□□□□□ -0.73
VPS29-211ENST00000553128 A0A1W2PRX2 142 aa10.49□□□□□ -0.73
VPS29-211ENST00000553128 PRSS37A4D1T9 235 aa10.49□□□□□ -0.73
VPS29-211ENST00000553128 SLC16A7O60669 478 aa10.49□□□□□ -0.73
VPS29-211ENST00000553128 GRPP07492 148 aa10.49□□□□□ -0.73
VPS29-211ENST00000553128 AMY2BP19961 511 aa10.49□□□□□ -0.73
VPS29-211ENST00000553128 HOXD3P31249 432 aaPredicted RBP10.49□□□□□ -0.73
VPS29-211ENST00000553128 BMXP51813 675 aa10.49□□□□□ -0.73
VPS29-211ENST00000553128 UBE2E1P51965 193 aa10.49□□□□□ -0.73
VPS29-211ENST00000553128 STX1BP61266 288 aa10.49□□□□□ -0.73
VPS29-211ENST00000553128 LSM6P62312 80 aaKnown RBP10.49□□□□□ -0.73
VPS29-211ENST00000553128 HIST1H3AP68431 136 aa10.49□□□□□ -0.73
VPS29-211ENST00000553128 IKZF1Q13422 519 aa10.49□□□□□ -0.73
VPS29-211ENST00000553128 C11orf91Q3C1V1 193 aa10.49□□□□□ -0.73
VPS29-211ENST00000553128 KRTAP27-1Q3LI81 207 aa10.49□□□□□ -0.73
VPS29-211ENST00000553128 WDR38Q5JTN6 314 aa10.49□□□□□ -0.73
VPS29-211ENST00000553128 HIST2H3PS2Q5TEC6 136 aa10.49□□□□□ -0.73
VPS29-211ENST00000553128 EPGNQ6UW88 154 aa10.49□□□□□ -0.73
VPS29-211ENST00000553128 HIST2H3AQ71DI3 136 aa10.49□□□□□ -0.73
VPS29-211ENST00000553128 PIFOQ8TCI5 191 aa10.49□□□□□ -0.73
VPS29-211ENST00000553128 SLC7A13Q8TCU3 470 aa10.49□□□□□ -0.73
VPS29-211ENST00000553128 SPRYD4Q8WW59 207 aaPredicted RBP10.49□□□□□ -0.73
VPS29-211ENST00000553128 COQ7Q99807 217 aa10.49□□□□□ -0.73
VPS29-211ENST00000553128 DCTN5Q9BTE1 182 aa10.49□□□□□ -0.73
VPS29-211ENST00000553128 SYT4Q9H2B2 425 aa10.49□□□□□ -0.73
VPS29-211ENST00000553128 TRIM36Q9NQ86 728 aa10.49□□□□□ -0.73
VPS29-211ENST00000553128 VSX1Q9NZR4 365 aaPredicted RBP10.49□□□□□ -0.73
VPS29-211ENST00000553128 RPS6KA6Q9UK32 745 aa10.49□□□□□ -0.73
VPS29-211ENST00000553128 hCG_1807616A0A1W2PRN6 198 aa10.48□□□□□ -0.73
VPS29-211ENST00000553128 A6NLC8 198 aa10.48□□□□□ -0.73
VPS29-211ENST00000553128 F5H5K5 113 aa10.48□□□□□ -0.73
VPS29-211ENST00000553128 ACOT8O14734 319 aa10.48□□□□□ -0.73
VPS29-211ENST00000553128 TFF1P04155 84 aa10.48□□□□□ -0.73
VPS29-211ENST00000553128 ACSM4P0C7M7 580 aa10.48□□□□□ -0.73
VPS29-211ENST00000553128 SLC9A3P48764 834 aa10.48□□□□□ -0.73
VPS29-211ENST00000553128 PCK2Q16822 640 aa10.48□□□□□ -0.73
VPS29-211ENST00000553128 AGKQ53H12 422 aa10.48□□□□□ -0.73
VPS29-211ENST00000553128 TNFAIP8L3Q5GJ75 292 aa10.48□□□□□ -0.73
VPS29-211ENST00000553128 PGAP1Q75T13 922 aa10.48□□□□□ -0.73
VPS29-211ENST00000553128 FAM122BQ7Z309 247 aa10.48□□□□□ -0.73
VPS29-211ENST00000553128 GLB1L2Q8IW92 636 aa10.48□□□□□ -0.73
VPS29-211ENST00000553128 CMTM4Q8IZR5 234 aa10.48□□□□□ -0.73
VPS29-211ENST00000553128 PAPD5Q8NDF8 572 aaKnown RBP10.48□□□□□ -0.73
VPS29-211ENST00000553128 OR51G2Q8NGK0 314 aa10.48□□□□□ -0.73
VPS29-211ENST00000553128 OR5M11Q96RB7 305 aa10.48□□□□□ -0.73
VPS29-211ENST00000553128 EBF4Q9BQW3 602 aa10.48□□□□□ -0.73
VPS29-211ENST00000553128 OCSTAMPQ9BR26 566 aa10.48□□□□□ -0.73
VPS29-211ENST00000553128 NPFFR1Q9GZQ6 430 aa10.48□□□□□ -0.73
VPS29-211ENST00000553128 CENPHQ9H3R5 247 aa10.48□□□□□ -0.73
VPS29-211ENST00000553128 KAT8Q9H7Z6 458 aaKnown RBP10.48□□□□□ -0.73
VPS29-211ENST00000553128 GRHPRQ9UBQ7 328 aa10.48□□□□□ -0.73
VPS29-211ENST00000553128 PRPF19Q9UMS4 504 aaKnown RBP10.48□□□□□ -0.73
VPS29-211ENST00000553128 CAPN7Q9Y6W3 813 aa10.48□□□□□ -0.73
VPS29-211ENST00000553128 CD300LBA8K4G0 201 aa10.47□□□□□ -0.73
VPS29-211ENST00000553128 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP10.47□□□□□ -0.73
VPS29-211ENST00000553128 CDC42EP2O14613 210 aa10.47□□□□□ -0.73
VPS29-211ENST00000553128 GZMMP51124 257 aa10.47□□□□□ -0.73
VPS29-211ENST00000553128 ACSM1Q08AH1 577 aa10.47□□□□□ -0.73
VPS29-211ENST00000553128 KCNMB1Q16558 191 aa10.47□□□□□ -0.73
VPS29-211ENST00000553128 LRRC75BQ2VPJ9 315 aa10.47□□□□□ -0.73
VPS29-211ENST00000553128 CFAP77Q6ZQR2 320 aa10.47□□□□□ -0.73
VPS29-211ENST00000553128 Q6ZS46 218 aa10.47□□□□□ -0.73
VPS29-211ENST00000553128 DHDDSQ86SQ9 333 aa10.47□□□□□ -0.73
VPS29-211ENST00000553128 OAFQ86UD1 273 aa10.47□□□□□ -0.73
VPS29-211ENST00000553128 NRMQ8IXM6 262 aa10.47□□□□□ -0.73
VPS29-211ENST00000553128 C11orf53Q8IXP5 236 aa10.47□□□□□ -0.73
VPS29-211ENST00000553128 OR10A6Q8NH74 314 aa10.47□□□□□ -0.73
VPS29-211ENST00000553128 ACOT11Q8WXI4 607 aaPredicted RBP10.47□□□□□ -0.73
VPS29-211ENST00000553128 ZNF570Q96NI8 536 aa10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms