RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 NPIPB9F8W1W9 429 aa6.83□□□□□ -1.32
LIMA1-216ENST00000552909 AP4M1O00189 453 aa6.83□□□□□ -1.32
LIMA1-216ENST00000552909 HRKO00198 91 aa6.83□□□□□ -1.32
LIMA1-216ENST00000552909 SLC31A2O15432 143 aa6.83□□□□□ -1.32
LIMA1-216ENST00000552909 PRKNO60260 465 aaPredicted RBP6.83□□□□□ -1.32
LIMA1-216ENST00000552909 GLSO94925 669 aaPredicted RBP6.83□□□□□ -1.32
LIMA1-216ENST00000552909 AKAIN1P0CW23 69 aa6.83□□□□□ -1.32
LIMA1-216ENST00000552909 TPT1P13693 172 aaKnown RBP6.83□□□□□ -1.32
LIMA1-216ENST00000552909 CPT2P23786 658 aa6.83□□□□□ -1.32
LIMA1-216ENST00000552909 TRHRP34981 398 aaPredicted RBP6.83□□□□□ -1.32
LIMA1-216ENST00000552909 ANXA11P50995 505 aaKnown RBP6.83□□□□□ -1.32
LIMA1-216ENST00000552909 RAB5CP51148 216 aa6.83□□□□□ -1.32
LIMA1-216ENST00000552909 TAS2R60P59551 318 aa6.83□□□□□ -1.32
LIMA1-216ENST00000552909 RPS11P62280 158 aaKnown RBP eCLIP6.83□□□□□ -1.32
LIMA1-216ENST00000552909 RELQ04864 619 aaPredicted RBP6.83□□□□□ -1.32
LIMA1-216ENST00000552909 SRSF4Q08170 494 aaKnown RBP6.83□□□□□ -1.32
LIMA1-216ENST00000552909 MFAP5Q13361 173 aa6.83□□□□□ -1.32
LIMA1-216ENST00000552909 INPP5JQ15735 1006 aaPredicted RBP6.83□□□□□ -1.32
LIMA1-216ENST00000552909 SSX2Q16385 188 aa6.83□□□□□ -1.32
LIMA1-216ENST00000552909 EXT1Q16394 746 aa6.83□□□□□ -1.32
LIMA1-216ENST00000552909 PRICKLE4Q2TBC4 344 aa6.83□□□□□ -1.32
LIMA1-216ENST00000552909 ZNF468Q5VIY5 522 aaPredicted RBP6.83□□□□□ -1.32
LIMA1-216ENST00000552909 OR52W1Q6IF63 320 aa6.83□□□□□ -1.32
LIMA1-216ENST00000552909 LPCAT3Q6P1A2 487 aa6.83□□□□□ -1.32
LIMA1-216ENST00000552909 UNQ6126/PRO20091Q6UXV3 157 aa6.83□□□□□ -1.32
LIMA1-216ENST00000552909 C16orf47Q6ZP98 133 aaPredicted RBP6.83□□□□□ -1.32
LIMA1-216ENST00000552909 DNM1P46Q6ZS02 220 aa6.83□□□□□ -1.32
LIMA1-216ENST00000552909 Q6ZS92 163 aa6.83□□□□□ -1.32
LIMA1-216ENST00000552909 LRRTM1Q86UE6 522 aa6.83□□□□□ -1.32
LIMA1-216ENST00000552909 ZADH2Q8N4Q0 377 aa6.83□□□□□ -1.32
LIMA1-216ENST00000552909 RNASE11Q8TAA1 199 aaKnown RBP6.83□□□□□ -1.32
LIMA1-216ENST00000552909 SFXN5Q8TD22 340 aa6.83□□□□□ -1.32
LIMA1-216ENST00000552909 ADAMTS18Q8TE60 1221 aa6.83□□□□□ -1.32
LIMA1-216ENST00000552909 CPNE4Q96A23 557 aaPredicted RBP6.83□□□□□ -1.32
LIMA1-216ENST00000552909 MIB2Q96AX9 1013 aa6.83□□□□□ -1.32
LIMA1-216ENST00000552909 MOAP1Q96BY2 351 aa6.83□□□□□ -1.32
LIMA1-216ENST00000552909 LMF1Q96S06 567 aa6.83□□□□□ -1.32
LIMA1-216ENST00000552909 GFI1Q99684 422 aa6.83□□□□□ -1.32
LIMA1-216ENST00000552909 NAA11Q9BSU3 229 aaPredicted RBP6.83□□□□□ -1.32
LIMA1-216ENST00000552909 TOLLIPQ9H0E2 274 aa6.83□□□□□ -1.32
LIMA1-216ENST00000552909 OR52D1Q9H346 318 aa6.83□□□□□ -1.32
LIMA1-216ENST00000552909 C1orf198Q9H425 327 aa6.83□□□□□ -1.32
LIMA1-216ENST00000552909 POFUT1Q9H488 388 aa6.83□□□□□ -1.32
LIMA1-216ENST00000552909 SEC61A2Q9H9S3 476 aa6.83□□□□□ -1.32
LIMA1-216ENST00000552909 NOX4Q9NPH5 578 aa6.83□□□□□ -1.32
LIMA1-216ENST00000552909 MEPEQ9NQ76 525 aaPredicted RBP6.83□□□□□ -1.32
LIMA1-216ENST00000552909 TMEM100Q9NV29 134 aa6.83□□□□□ -1.32
LIMA1-216ENST00000552909 PPP4R1LQ9P1A2 415 aa6.83□□□□□ -1.32
LIMA1-216ENST00000552909 OR5V1Q9UGF6 321 aa6.83□□□□□ -1.32
LIMA1-216ENST00000552909 ETV7Q9Y603 341 aa6.83□□□□□ -1.32
LIMA1-216ENST00000552909 KCNE3Q9Y6H6 103 aa6.83□□□□□ -1.32
LIMA1-216ENST00000552909 V9GY05 133 aa6.83□□□□□ -1.32
LIMA1-216ENST00000552909 HIVEP3Q5T1R4 2406 aa6.82□□□□□ -1.32
LIMA1-216ENST00000552909 TRBV2A0A0J9YWF9 115 aa6.82□□□□□ -1.32
LIMA1-216ENST00000552909 A0A1B0GTI1 187 aa6.82□□□□□ -1.32
LIMA1-216ENST00000552909 GXYLT2A0PJZ3 443 aa6.82□□□□□ -1.32
LIMA1-216ENST00000552909 C9orf170A2RU37 121 aa6.82□□□□□ -1.32
LIMA1-216ENST00000552909 BLACEA4D250 179 aa6.82□□□□□ -1.32
LIMA1-216ENST00000552909 METTL21EPA6NDL7 271 aa6.82□□□□□ -1.32
LIMA1-216ENST00000552909 UNC119BA6NIH7 251 aa6.82□□□□□ -1.32
LIMA1-216ENST00000552909 SULT2B1O00204 365 aa6.82□□□□□ -1.32
LIMA1-216ENST00000552909 CDC42EP2O14613 210 aa6.82□□□□□ -1.32
LIMA1-216ENST00000552909 CT62P0C5K7 136 aa6.82□□□□□ -1.32
LIMA1-216ENST00000552909 OR4E1P0C645 316 aa6.82□□□□□ -1.32
LIMA1-216ENST00000552909 SFTA3P0C7M3 94 aa6.82□□□□□ -1.32
LIMA1-216ENST00000552909 GTF2F2P13984 249 aa6.82□□□□□ -1.32
LIMA1-216ENST00000552909 BMP7P18075 431 aa6.82□□□□□ -1.32
LIMA1-216ENST00000552909 PMELP40967 661 aa6.82□□□□□ -1.32
LIMA1-216ENST00000552909 F2RL1P55085 397 aa6.82□□□□□ -1.32
LIMA1-216ENST00000552909 MGAT2Q10469 447 aa6.82□□□□□ -1.32
LIMA1-216ENST00000552909 ESPL1Q14674 2120 aa6.82□□□□□ -1.32
LIMA1-216ENST00000552909 AKIRIN2Q53H80 203 aa6.82□□□□□ -1.32
LIMA1-216ENST00000552909 OR10K2Q6IF99 312 aa6.82□□□□□ -1.32
LIMA1-216ENST00000552909 SSX6Q7RTT6 188 aa6.82□□□□□ -1.32
LIMA1-216ENST00000552909 ZGRF1Q86YA3 2104 aa6.82□□□□□ -1.32
LIMA1-216ENST00000552909 OR2L13Q8N349 312 aa6.82□□□□□ -1.32
LIMA1-216ENST00000552909 TMEM255BQ8WV15 326 aa6.82□□□□□ -1.32
LIMA1-216ENST00000552909 SLC41A3Q96GZ6 507 aa6.82□□□□□ -1.32
LIMA1-216ENST00000552909 C14orf144Q96I85 54 aa6.82□□□□□ -1.32
LIMA1-216ENST00000552909 DGAT2Q96PD7 388 aa6.82□□□□□ -1.32
LIMA1-216ENST00000552909 TTTY10Q9BZA0 68 aa6.82□□□□□ -1.32
LIMA1-216ENST00000552909 CHST6Q9GZX3 395 aa6.82□□□□□ -1.32
LIMA1-216ENST00000552909 ADAP2Q9NPF8 381 aa6.82□□□□□ -1.32
LIMA1-216ENST00000552909 PPP1R14DQ9NXH3 145 aa6.82□□□□□ -1.32
LIMA1-216ENST00000552909 GPR55Q9Y2T6 319 aaPredicted RBP6.82□□□□□ -1.32
LIMA1-216ENST00000552909 FAM96BQ9Y3D0 163 aa6.82□□□□□ -1.32
LIMA1-216ENST00000552909 POLEQ07864 2286 aa6.82□□□□□ -1.32
LIMA1-216ENST00000552909 C17orf105B2RV13 164 aa6.82□□□□□ -1.32
LIMA1-216ENST00000552909 BHLHE40O14503 412 aa6.82□□□□□ -1.32
LIMA1-216ENST00000552909 PPIHO43447 177 aaKnown RBP6.82□□□□□ -1.32
LIMA1-216ENST00000552909 DDAH2O95865 285 aa6.82□□□□□ -1.32
LIMA1-216ENST00000552909 CD1AP06126 327 aa6.82□□□□□ -1.32
LIMA1-216ENST00000552909 EDNRAP25101 427 aa6.82□□□□□ -1.32
LIMA1-216ENST00000552909 RGS8P57771 180 aaPredicted RBP6.82□□□□□ -1.32
LIMA1-216ENST00000552909 SPCS3P61009 180 aa6.82□□□□□ -1.32
LIMA1-216ENST00000552909 ACTA2P62736 377 aa6.82□□□□□ -1.32
LIMA1-216ENST00000552909 ACTG2P63267 376 aa6.82□□□□□ -1.32
LIMA1-216ENST00000552909 SIRPAP78324 504 aa6.82□□□□□ -1.32
LIMA1-216ENST00000552909 ARG2P78540 354 aa6.82□□□□□ -1.32
LIMA1-216ENST00000552909 IGLV3-21P80748 117 aaPredicted RBP6.82□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms