RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 RNASE10Q5GAN6 216 aaKnown RBP4.33□□□□□ -1.72
LIMA1-214ENST00000552783 PYY3Q5JQD4 70 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 OR2B11Q5JQS5 317 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 TTLL10Q6ZVT0 673 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 KDM8Q8N371 416 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 LILRB2Q8N423 598 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 CHST4Q8NCG5 386 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 OTOSQ8NHW6 89 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 LMX1AQ8TE12 382 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 ADAMTS17Q8TE56 1095 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 AQP3Q92482 292 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 SMIM8Q96KF7 97 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 VSTM2LQ96N03 204 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 ZNF587Q96SQ5 575 aaPredicted RBP4.33□□□□□ -1.72
LIMA1-214ENST00000552783 ADOQ96SZ5 270 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 PHB2Q99623 299 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 SULT4A1Q9BR01 284 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 GGACTQ9BVM4 153 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 SMIM3Q9BZL3 60 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 SLC5A7Q9GZV3 580 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 RAB33BQ9H082 229 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 C5orf66Q9H5L9 145 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 CNTD2Q9H8S5 307 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 MYOZ1Q9NP98 299 aaPredicted RBP4.33□□□□□ -1.72
LIMA1-214ENST00000552783 MMP25Q9NPA2 562 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 SLC2A8Q9NY64 477 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 SLC17A4Q9Y2C5 497 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 HIF3AQ9Y2N7 669 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 MUC22E2RYF6 1773 aaPredicted RBP4.33□□□□□ -1.72
LIMA1-214ENST00000552783 A0A1B0GV50 99 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 A0A1W2PP11 408 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 C7orf77A4D0Y5 90 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 C1orf196B1AJZ1 125 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 GPR89AB7ZAQ6 455 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 EIF1AYO14602 144 aaKnown RBP4.33□□□□□ -1.72
LIMA1-214ENST00000552783 HTR3BO95264 441 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 DUS4LO95620 317 aaKnown RBP4.33□□□□□ -1.72
LIMA1-214ENST00000552783 SPARCP09486 303 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 ASAH2BP0C7U1 165 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 GPR89BP0CG08 455 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 RNH1P13489 461 aaKnown RBP4.33□□□□□ -1.72
LIMA1-214ENST00000552783 NME1P15531 152 aaKnown RBP4.33□□□□□ -1.72
LIMA1-214ENST00000552783 IGFBP3P17936 291 aaPredicted RBP4.33□□□□□ -1.72
LIMA1-214ENST00000552783 SLC25A1P53007 311 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 SHHQ15465 462 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 ZNF239Q16600 458 aaKnown RBP4.33□□□□□ -1.72
LIMA1-214ENST00000552783 EEF1A1P5Q5VTE0 462 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 C1orf189Q5VU69 101 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 LPCAT3Q6P1A2 487 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 BTNL8Q6UX41 500 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 TMEM184AQ6ZMB5 413 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 PGAP1Q75T13 922 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 LYPD6Q86Y78 171 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 ZNF321PQ8N8H1 164 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 TMEM104Q8NE00 496 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 OR52N4Q8NGI2 321 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 NT5CQ8TCD5 201 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 MAFIPQ8WZ33 124 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 KIRREL1Q96J84 757 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 MRGPRX1Q96LB2 322 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 GPX7Q96SL4 187 aaPredicted RBP4.33□□□□□ -1.72
LIMA1-214ENST00000552783 INTS14Q96SY0 518 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 SOX7Q9BT81 388 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 SCRT1Q9BWW7 348 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 PDE7BQ9NP56 450 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 GRHPRQ9UBQ7 328 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 GDF2Q9UK05 429 aaPredicted RBP4.33□□□□□ -1.72
LIMA1-214ENST00000552783 DHDHQ9UQ10 334 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 POLR1DQ9Y2S0 133 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 EMC9Q9Y3B6 208 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 CACNA1EQ15878 2313 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 A0A0A6YYD4 124 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 SCDO00767 359 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 OPN1LWP04000 364 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 S100A9P06702 114 aaKnown RBP4.33□□□□□ -1.72
LIMA1-214ENST00000552783 PRF1P14222 555 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 CTLA4P16410 223 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 CFPP27918 469 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 INSM1Q01101 510 aaPredicted RBP4.33□□□□□ -1.72
LIMA1-214ENST00000552783 ZP2Q05996 745 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 COL13A1Q5TAT6 717 aaPredicted RBP4.33□□□□□ -1.72
LIMA1-214ENST00000552783 CLEC18BQ6UXF7 455 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 ATG4DQ86TL0 474 aaPredicted RBP4.33□□□□□ -1.72
LIMA1-214ENST00000552783 LINC00346Q8IVM7 164 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 SKA3Q8IX90 412 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 CA13Q8N1Q1 262 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 BCORP1Q8N888 145 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 ASB13Q8WXK3 278 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 SCARF2Q96GP6 870 aaPredicted RBP4.33□□□□□ -1.72
LIMA1-214ENST00000552783 LRFN5Q96NI6 719 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 OR8B4Q96RC9 309 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 FOXQ1Q9C009 403 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 CRISPLD2Q9H0B8 497 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 FAM60AQ9NP50 221 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 SMCO4Q9NRQ5 59 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 ST6GALNAC1Q9NSC7 600 aaPredicted RBP4.33□□□□□ -1.72
LIMA1-214ENST00000552783 CENPMQ9NSP4 180 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 GSKIPQ9P0R6 139 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 LRP12Q9Y561 859 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 TIMM10BQ9Y5J6 103 aa4.33□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms