RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 A0A0D9SG52 128 aa6.65□□□□□ -1.34
LIMA1-213ENST00000552720 C13orf42A0A1B0GVH6 325 aa6.65□□□□□ -1.34
LIMA1-213ENST00000552720 METTL21EPA6NDL7 271 aa6.65□□□□□ -1.34
LIMA1-213ENST00000552720 ANKUB1A6NFN9 424 aa6.65□□□□□ -1.34
LIMA1-213ENST00000552720 A6NIZ1 184 aa6.65□□□□□ -1.34
LIMA1-213ENST00000552720 TMEM200CA6NKL6 621 aa6.65□□□□□ -1.34
LIMA1-213ENST00000552720 FAM74A7A6NL05 159 aa6.65□□□□□ -1.34
LIMA1-213ENST00000552720 SULT2B1O00204 365 aa6.65□□□□□ -1.34
LIMA1-213ENST00000552720 SOCS1O15524 211 aa6.65□□□□□ -1.34
LIMA1-213ENST00000552720 EFSO43281 561 aa6.65□□□□□ -1.34
LIMA1-213ENST00000552720 BCL2L11O43521 198 aa6.65□□□□□ -1.34
LIMA1-213ENST00000552720 RAMP1O60894 148 aa6.65□□□□□ -1.34
LIMA1-213ENST00000552720 PIAS2O75928 621 aa6.65□□□□□ -1.34
LIMA1-213ENST00000552720 PLATP00750 562 aa6.65□□□□□ -1.34
LIMA1-213ENST00000552720 ICAM2P13598 275 aa6.65□□□□□ -1.34
LIMA1-213ENST00000552720 AGTR1P30556 359 aa6.65□□□□□ -1.34
LIMA1-213ENST00000552720 CASRP41180 1078 aa6.65□□□□□ -1.34
LIMA1-213ENST00000552720 STARP49675 285 aa6.65□□□□□ -1.34
LIMA1-213ENST00000552720 DAP3P51398 398 aaKnown RBP6.65□□□□□ -1.34
LIMA1-213ENST00000552720 NXPH1P58417 271 aa6.65□□□□□ -1.34
LIMA1-213ENST00000552720 RAP1BP61224 184 aa6.65□□□□□ -1.34
LIMA1-213ENST00000552720 HNRNPKP61978 463 aaKnown RBP eCLIP6.65□□□□□ -1.34
LIMA1-213ENST00000552720 RAP1AP62834 184 aa6.65□□□□□ -1.34
LIMA1-213ENST00000552720 DEFA5Q01523 94 aa6.65□□□□□ -1.34
LIMA1-213ENST00000552720 MYBPHQ13203 477 aa6.65□□□□□ -1.34
LIMA1-213ENST00000552720 RAB30Q15771 203 aa6.65□□□□□ -1.34
LIMA1-213ENST00000552720 SWI5Q1ZZU3 235 aa6.65□□□□□ -1.34
LIMA1-213ENST00000552720 RSPO4Q2I0M5 234 aaPredicted RBP6.65□□□□□ -1.34
LIMA1-213ENST00000552720 FAM74A3Q4VXF1 159 aa6.65□□□□□ -1.34
LIMA1-213ENST00000552720 PLAC9Q5JTB6 97 aa6.65□□□□□ -1.34
LIMA1-213ENST00000552720 MOB3CQ70IA8 216 aa6.65□□□□□ -1.34
LIMA1-213ENST00000552720 COMMD2Q86X83 199 aa6.65□□□□□ -1.34
LIMA1-213ENST00000552720 ZNF101Q8IZC7 436 aa6.65□□□□□ -1.34
LIMA1-213ENST00000552720 BPIFCQ8NFQ6 507 aa6.65□□□□□ -1.34
LIMA1-213ENST00000552720 OR10H5Q8NGA6 315 aa6.65□□□□□ -1.34
LIMA1-213ENST00000552720 MFSD8Q8NHS3 518 aa6.65□□□□□ -1.34
LIMA1-213ENST00000552720 MITD1Q8WV92 249 aa6.65□□□□□ -1.34
LIMA1-213ENST00000552720 TMEM234Q8WY98 164 aa6.65□□□□□ -1.34
LIMA1-213ENST00000552720 EDAQ92838 391 aa6.65□□□□□ -1.34
LIMA1-213ENST00000552720 WNT2BQ93097 391 aa6.65□□□□□ -1.34
LIMA1-213ENST00000552720 PRRT1Q99946 306 aa6.65□□□□□ -1.34
LIMA1-213ENST00000552720 SLC25A32Q9H2D1 315 aa6.65□□□□□ -1.34
LIMA1-213ENST00000552720 MYOZ1Q9NP98 299 aaPredicted RBP6.65□□□□□ -1.34
LIMA1-213ENST00000552720 IFT46Q9NQC8 304 aa6.65□□□□□ -1.34
LIMA1-213ENST00000552720 TAS2R3Q9NYW6 316 aa6.65□□□□□ -1.34
LIMA1-213ENST00000552720 CYB5R1Q9UHQ9 305 aa6.65□□□□□ -1.34
LIMA1-213ENST00000552720 LHFPL6Q9Y693 200 aa6.65□□□□□ -1.34
LIMA1-213ENST00000552720 A0A0A6YYH2 397 aa6.65□□□□□ -1.35
LIMA1-213ENST00000552720 A6NJ64 397 aa6.65□□□□□ -1.35
LIMA1-213ENST00000552720 LIPT2A6NK58 231 aa6.65□□□□□ -1.35
LIMA1-213ENST00000552720 MPTX1A8MV57 137 aa6.65□□□□□ -1.35
LIMA1-213ENST00000552720 E9PLN8 166 aa6.65□□□□□ -1.35
LIMA1-213ENST00000552720 DNASE2O00115 360 aaPredicted RBP6.65□□□□□ -1.35
LIMA1-213ENST00000552720 SNAPC5O75971 98 aa6.65□□□□□ -1.35
LIMA1-213ENST00000552720 DKK1O94907 266 aa6.65□□□□□ -1.35
LIMA1-213ENST00000552720 IL2RAP01589 272 aa6.65□□□□□ -1.35
LIMA1-213ENST00000552720 FOSL2P15408 326 aa6.65□□□□□ -1.35
LIMA1-213ENST00000552720 CTRB1P17538 263 aa6.65□□□□□ -1.35
LIMA1-213ENST00000552720 RAB6AP20340 208 aa6.65□□□□□ -1.35
LIMA1-213ENST00000552720 HSD11B1P28845 292 aa6.65□□□□□ -1.35
LIMA1-213ENST00000552720 ZNF93P35789 620 aaPredicted RBP6.65□□□□□ -1.35
LIMA1-213ENST00000552720 OR3A4PP47883 348 aa6.65□□□□□ -1.35
LIMA1-213ENST00000552720 SRSF4Q08170 494 aaKnown RBP6.65□□□□□ -1.35
LIMA1-213ENST00000552720 ZP4Q12836 540 aa6.65□□□□□ -1.35
LIMA1-213ENST00000552720 MEF2DQ14814 521 aa6.65□□□□□ -1.35
LIMA1-213ENST00000552720 CTRB2Q6GPI1 263 aa6.65□□□□□ -1.35
LIMA1-213ENST00000552720 DNM1P34Q6PK57 102 aa6.65□□□□□ -1.35
LIMA1-213ENST00000552720 KLHL24Q6TFL4 600 aa6.65□□□□□ -1.35
LIMA1-213ENST00000552720 SLC25A45Q8N413 288 aa6.65□□□□□ -1.35
LIMA1-213ENST00000552720 EIF4E3Q8N5X7 224 aaKnown RBP6.65□□□□□ -1.35
LIMA1-213ENST00000552720 TMEM185AQ8NFB2 350 aa6.65□□□□□ -1.35
LIMA1-213ENST00000552720 OR1S2Q8NGQ3 325 aa6.65□□□□□ -1.35
LIMA1-213ENST00000552720 LRRC46Q96FV0 321 aa6.65□□□□□ -1.35
LIMA1-213ENST00000552720 NARS2Q96I59 477 aaKnown RBP6.65□□□□□ -1.35
LIMA1-213ENST00000552720 FAM71F1Q96KD3 344 aaPredicted RBP6.65□□□□□ -1.35
LIMA1-213ENST00000552720 LPAR5Q9H1C0 372 aa6.65□□□□□ -1.35
LIMA1-213ENST00000552720 SLC2A8Q9NY64 477 aa6.65□□□□□ -1.35
LIMA1-213ENST00000552720 KLRF1Q9NZS2 232 aa6.65□□□□□ -1.35
LIMA1-213ENST00000552720 TRBV11-1A0A0K0K1C0 115 aa6.64□□□□□ -1.35
LIMA1-213ENST00000552720 C5orf51A6NDU8 294 aa6.64□□□□□ -1.35
LIMA1-213ENST00000552720 OR6C76A6NM76 312 aa6.64□□□□□ -1.35
LIMA1-213ENST00000552720 F5H0A9 414 aaPredicted RBP6.64□□□□□ -1.35
LIMA1-213ENST00000552720 TOR1AO14656 332 aa6.64□□□□□ -1.35
LIMA1-213ENST00000552720 RER1O15258 196 aa6.64□□□□□ -1.35
LIMA1-213ENST00000552720 NUDT21O43809 227 aaKnown RBP6.64□□□□□ -1.35
LIMA1-213ENST00000552720 DUX1O43812 170 aa6.64□□□□□ -1.35
LIMA1-213ENST00000552720 RAD51DO75771 328 aa6.64□□□□□ -1.35
LIMA1-213ENST00000552720 OR2F2O95006 317 aa6.64□□□□□ -1.35
LIMA1-213ENST00000552720 MPIG6BO95866 241 aa6.64□□□□□ -1.35
LIMA1-213ENST00000552720 SLC25A4P12235 298 aa6.64□□□□□ -1.35
LIMA1-213ENST00000552720 PGAM2P15259 253 aa6.64□□□□□ -1.35
LIMA1-213ENST00000552720 ZNF17P17021 662 aa6.64□□□□□ -1.35
LIMA1-213ENST00000552720 CNR1P21554 472 aa6.64□□□□□ -1.35
LIMA1-213ENST00000552720 SERPINF1P36955 418 aa6.64□□□□□ -1.35
LIMA1-213ENST00000552720 EMP2P54851 167 aa6.64□□□□□ -1.35
LIMA1-213ENST00000552720 PPIAP62937 165 aaKnown RBP6.64□□□□□ -1.35
LIMA1-213ENST00000552720 MC2RQ01718 297 aa6.64□□□□□ -1.35
LIMA1-213ENST00000552720 FGL1Q08830 312 aa6.64□□□□□ -1.35
LIMA1-213ENST00000552720 C17orf67Q0P5P2 114 aa6.64□□□□□ -1.35
LIMA1-213ENST00000552720 OR2F1Q13607 317 aa6.64□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms