RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 SLC30A7Q8NEW0 376 aa4.82□□□□□ -1.64
LIMA1-212ENST00000552491 SLC26A10Q8NG04 563 aa4.82□□□□□ -1.64
LIMA1-212ENST00000552491 C2CD4CQ8TF44 421 aa4.82□□□□□ -1.64
LIMA1-212ENST00000552491 RNF141Q8WVD5 230 aa4.82□□□□□ -1.64
LIMA1-212ENST00000552491 DCUN1D4Q92564 292 aa4.82□□□□□ -1.64
LIMA1-212ENST00000552491 DUSP15Q9H1R2 295 aaPredicted RBP4.82□□□□□ -1.64
LIMA1-212ENST00000552491 OR5AC2Q9NZP5 309 aa4.82□□□□□ -1.64
LIMA1-212ENST00000552491 RAB22AQ9UL26 194 aa4.82□□□□□ -1.64
LIMA1-212ENST00000552491 CARHSP1Q9Y2V2 147 aaKnown RBP4.82□□□□□ -1.64
LIMA1-212ENST00000552491 SDK1Q7Z5N4 2213 aa4.82□□□□□ -1.64
LIMA1-212ENST00000552491 TRBV6-7A0A0A0MS04 114 aa4.82□□□□□ -1.64
LIMA1-212ENST00000552491 TMED7-TICAM2A0A0A6YYA0 188 aa4.82□□□□□ -1.64
LIMA1-212ENST00000552491 A0A1W2PP11 408 aa4.82□□□□□ -1.64
LIMA1-212ENST00000552491 C9JQL5 133 aa4.82□□□□□ -1.64
LIMA1-212ENST00000552491 DUS4LO95620 317 aaKnown RBP4.82□□□□□ -1.64
LIMA1-212ENST00000552491 MT-ATP6P00846 226 aa4.82□□□□□ -1.64
LIMA1-212ENST00000552491 CRYBA1P05813 215 aa4.82□□□□□ -1.64
LIMA1-212ENST00000552491 IGHV4-34P06331 123 aa4.82□□□□□ -1.64
LIMA1-212ENST00000552491 SPP1P10451 314 aa4.82□□□□□ -1.64
LIMA1-212ENST00000552491 CD46P15529 392 aa4.82□□□□□ -1.64
LIMA1-212ENST00000552491 PVALBP20472 110 aaPredicted RBP4.82□□□□□ -1.64
LIMA1-212ENST00000552491 RFC3P40938 356 aa4.82□□□□□ -1.64
LIMA1-212ENST00000552491 CBX5P45973 191 aa4.82□□□□□ -1.64
LIMA1-212ENST00000552491 RAB13P51153 203 aa4.82□□□□□ -1.64
LIMA1-212ENST00000552491 NR0B1P51843 470 aaKnown RBP4.82□□□□□ -1.64
LIMA1-212ENST00000552491 GFERP55789 205 aa4.82□□□□□ -1.64
LIMA1-212ENST00000552491 FZD2Q14332 565 aa4.82□□□□□ -1.64
LIMA1-212ENST00000552491 PNLIPRP3Q17RR3 467 aa4.82□□□□□ -1.64
LIMA1-212ENST00000552491 DMRTC1Q5HYR2 192 aa4.82□□□□□ -1.64
LIMA1-212ENST00000552491 NKAPLQ5M9Q1 402 aa4.82□□□□□ -1.64
LIMA1-212ENST00000552491 C1orf140Q5VVS0 124 aa4.82□□□□□ -1.64
LIMA1-212ENST00000552491 ARMC6Q6NXE6 501 aa4.82□□□□□ -1.64
LIMA1-212ENST00000552491 ETV3LQ6ZN32 361 aa4.82□□□□□ -1.64
LIMA1-212ENST00000552491 BAP18Q8IXM2 172 aa4.82□□□□□ -1.64
LIMA1-212ENST00000552491 C9orf40Q8IXQ3 194 aa4.82□□□□□ -1.64
LIMA1-212ENST00000552491 NKAIN3Q8N8D7 197 aa4.82□□□□□ -1.64
LIMA1-212ENST00000552491 OR10R2Q8NGX6 335 aa4.82□□□□□ -1.64
LIMA1-212ENST00000552491 OR51F2Q8NH61 342 aa4.82□□□□□ -1.64
LIMA1-212ENST00000552491 PHOSPHO2Q8TCD6 241 aa4.82□□□□□ -1.64
LIMA1-212ENST00000552491 ZNF721Q8TF20 911 aa4.82□□□□□ -1.64
LIMA1-212ENST00000552491 ARL11Q969Q4 196 aa4.82□□□□□ -1.64
LIMA1-212ENST00000552491 CPNE2Q96FN4 548 aaPredicted RBP4.82□□□□□ -1.64
LIMA1-212ENST00000552491 C5orf66Q9H5L9 145 aa4.82□□□□□ -1.64
LIMA1-212ENST00000552491 CENPMQ9NSP4 180 aa4.82□□□□□ -1.64
LIMA1-212ENST00000552491 CTSFQ9UBX1 484 aa4.82□□□□□ -1.64
LIMA1-212ENST00000552491 ATPIF1Q9UII2 106 aa4.82□□□□□ -1.64
LIMA1-212ENST00000552491 NCOA6Q14686 2063 aaPredicted RBP4.82□□□□□ -1.64
LIMA1-212ENST00000552491 UNC13CQ8NB66 2214 aa4.82□□□□□ -1.64
LIMA1-212ENST00000552491 IGHV5-51A0A0C4DH38 117 aa4.81□□□□□ -1.64
LIMA1-212ENST00000552491 PQLC2LA1A4F0 135 aa4.81□□□□□ -1.64
LIMA1-212ENST00000552491 FRG2CA6NGY1 282 aa4.81□□□□□ -1.64
LIMA1-212ENST00000552491 CCDC85CA6NKD9 419 aa4.81□□□□□ -1.64
LIMA1-212ENST00000552491 FTCDNL1E5RQL4 147 aa4.81□□□□□ -1.64
LIMA1-212ENST00000552491 PRAMEF26H0Y7S4 382 aa4.81□□□□□ -1.64
LIMA1-212ENST00000552491 MS4A18H0YCH9 400 aa4.81□□□□□ -1.64
LIMA1-212ENST00000552491 SOCS1O15524 211 aa4.81□□□□□ -1.64
LIMA1-212ENST00000552491 TSPAN2O60636 221 aa4.81□□□□□ -1.64
LIMA1-212ENST00000552491 RAD51DO75771 328 aa4.81□□□□□ -1.64
LIMA1-212ENST00000552491 SNAPINO95295 136 aa4.81□□□□□ -1.64
LIMA1-212ENST00000552491 TTRP02766 147 aa4.81□□□□□ -1.64
LIMA1-212ENST00000552491 MUC1P15941 1255 aaPredicted RBP4.81□□□□□ -1.64
LIMA1-212ENST00000552491 BCKDHBP21953 392 aa4.81□□□□□ -1.64
LIMA1-212ENST00000552491 AKT2P31751 481 aa4.81□□□□□ -1.64
LIMA1-212ENST00000552491 CTHP32929 405 aa4.81□□□□□ -1.64
LIMA1-212ENST00000552491 ID4P47928 161 aa4.81□□□□□ -1.64
LIMA1-212ENST00000552491 CX3CR1P49238 355 aa4.81□□□□□ -1.64
LIMA1-212ENST00000552491 SUPT4H1P63272 117 aaKnown RBP4.81□□□□□ -1.64
LIMA1-212ENST00000552491 CYCSP99999 105 aaKnown RBP4.81□□□□□ -1.64
LIMA1-212ENST00000552491 GLO1Q04760 184 aa4.81□□□□□ -1.64
LIMA1-212ENST00000552491 EBPQ15125 230 aaKnown RBP4.81□□□□□ -1.64
LIMA1-212ENST00000552491 SLC9A3R2Q15599 337 aa4.81□□□□□ -1.64
LIMA1-212ENST00000552491 SGCAQ16586 387 aa4.81□□□□□ -1.64
LIMA1-212ENST00000552491 GFOD2Q3B7J2 385 aa4.81□□□□□ -1.64
LIMA1-212ENST00000552491 MS4A18Q3C1V0 323 aa4.81□□□□□ -1.64
LIMA1-212ENST00000552491 PLAC9Q5JTB6 97 aa4.81□□□□□ -1.64
LIMA1-212ENST00000552491 TMEM244Q5VVB8 128 aa4.81□□□□□ -1.64
LIMA1-212ENST00000552491 ZNF385CQ66K41 422 aaPredicted RBP4.81□□□□□ -1.64
LIMA1-212ENST00000552491 ZNF704Q6ZNC4 412 aaPredicted RBP4.81□□□□□ -1.64
LIMA1-212ENST00000552491 C16orf47Q6ZP98 133 aaPredicted RBP4.81□□□□□ -1.64
LIMA1-212ENST00000552491 SLC29A4Q7RTT9 530 aa4.81□□□□□ -1.64
LIMA1-212ENST00000552491 HOGA1Q86XE5 327 aa4.81□□□□□ -1.64
LIMA1-212ENST00000552491 DTWD2Q8NBA8 298 aa4.81□□□□□ -1.64
LIMA1-212ENST00000552491 TMEM104Q8NE00 496 aa4.81□□□□□ -1.64
LIMA1-212ENST00000552491 OR10S1Q8NGN2 331 aa4.81□□□□□ -1.64
LIMA1-212ENST00000552491 RXFP4Q8TDU9 374 aa4.81□□□□□ -1.64
LIMA1-212ENST00000552491 ARL5BQ96KC2 179 aa4.81□□□□□ -1.64
LIMA1-212ENST00000552491 ZNF285Q96NJ3 590 aa4.81□□□□□ -1.64
LIMA1-212ENST00000552491 SLC46A1Q96NT5 459 aa4.81□□□□□ -1.64
LIMA1-212ENST00000552491 CDC6Q99741 560 aa4.81□□□□□ -1.64
LIMA1-212ENST00000552491 SEC11CQ9BY50 192 aa4.81□□□□□ -1.64
LIMA1-212ENST00000552491 LDHAL6BQ9BYZ2 381 aaPredicted RBP4.81□□□□□ -1.64
LIMA1-212ENST00000552491 NMES1Q9C002 83 aa4.81□□□□□ -1.64
LIMA1-212ENST00000552491 IFT22Q9H7X7 185 aa4.81□□□□□ -1.64
LIMA1-212ENST00000552491 BIN3Q9NQY0 253 aa4.81□□□□□ -1.64
LIMA1-212ENST00000552491 UQCC1Q9NVA1 299 aa4.81□□□□□ -1.64
LIMA1-212ENST00000552491 FAM206AQ9NX38 181 aa4.81□□□□□ -1.64
LIMA1-212ENST00000552491 MED29Q9NX70 200 aa4.81□□□□□ -1.64
LIMA1-212ENST00000552491 ATXN7L1Q9ULK2 861 aaPredicted RBP4.81□□□□□ -1.64
LIMA1-212ENST00000552491 IGKV3D-11A0A0A0MRZ8 115 aa4.81□□□□□ -1.64
LIMA1-212ENST00000552491 SPTY2D1-AS1A0A0U1RR47 76 aa4.81□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms