RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 ACTBL2Q562R1 376 aa8.73□□□□□ -1.01
SS18-205ENST00000542420 JMJD6Q6NYC1 403 aaPredicted RBP8.73□□□□□ -1.01
SS18-205ENST00000542420 FAHD2BQ6P2I3 314 aaPredicted RBP8.73□□□□□ -1.01
SS18-205ENST00000542420 NLRC3Q7RTR2 1065 aa8.73□□□□□ -1.01
SS18-205ENST00000542420 BIVMQ86UB2 503 aa8.73□□□□□ -1.01
SS18-205ENST00000542420 COMMD7Q86VX2 200 aa8.73□□□□□ -1.01
SS18-205ENST00000542420 TMEM123Q8N131 208 aa8.73□□□□□ -1.01
SS18-205ENST00000542420 JAGN1Q8N5M9 183 aa8.73□□□□□ -1.01
SS18-205ENST00000542420 ZDHHC22Q8N966 263 aa8.73□□□□□ -1.01
SS18-205ENST00000542420 OR1J2Q8NGS2 313 aa8.73□□□□□ -1.01
SS18-205ENST00000542420 SSC4DQ8WTU2 575 aa8.73□□□□□ -1.01
SS18-205ENST00000542420 ST8SIA4Q92187 359 aa8.73□□□□□ -1.01
SS18-205ENST00000542420 PPP1R14AQ96A00 147 aa8.73□□□□□ -1.01
SS18-205ENST00000542420 FGGYQ96C11 551 aa8.73□□□□□ -1.01
SS18-205ENST00000542420 DNAJA3Q96EY1 480 aa8.73□□□□□ -1.01
SS18-205ENST00000542420 FAHD2AQ96GK7 314 aa8.73□□□□□ -1.01
SS18-205ENST00000542420 POM121Q96HA1 1249 aa8.73□□□□□ -1.01
SS18-205ENST00000542420 PRRT1Q99946 306 aa8.73□□□□□ -1.01
SS18-205ENST00000542420 EMC6Q9BV81 110 aa8.73□□□□□ -1.01
SS18-205ENST00000542420 CDCP1Q9H5V8 836 aa8.73□□□□□ -1.01
SS18-205ENST00000542420 SPTBN5Q9NRC6 3674 aaKnown RBP8.73□□□□□ -1.01
SS18-205ENST00000542420 A0A1W2PNR3 127 aa8.72□□□□□ -1.01
SS18-205ENST00000542420 SHISA8B8ZZ34 492 aa8.72□□□□□ -1.01
SS18-205ENST00000542420 CA11O75493 328 aa8.72□□□□□ -1.01
SS18-205ENST00000542420 RAB3DO95716 219 aa8.72□□□□□ -1.01
SS18-205ENST00000542420 CYB5AP00167 134 aa8.72□□□□□ -1.01
SS18-205ENST00000542420 IFNA7P01567 189 aa8.72□□□□□ -1.01
SS18-205ENST00000542420 PRF1P14222 555 aa8.72□□□□□ -1.01
SS18-205ENST00000542420 GNALP38405 381 aa8.72□□□□□ -1.01
SS18-205ENST00000542420 RAD52P43351 418 aa8.72□□□□□ -1.01
SS18-205ENST00000542420 ZNF84P51523 738 aa8.72□□□□□ -1.01
SS18-205ENST00000542420 RAC3P60763 192 aa8.72□□□□□ -1.01
SS18-205ENST00000542420 PLA2G7Q13093 441 aa8.72□□□□□ -1.01
SS18-205ENST00000542420 RTL6Q6ICC9 239 aa8.72□□□□□ -1.01
SS18-205ENST00000542420 TFAP2EQ6VUC0 442 aa8.72□□□□□ -1.01
SS18-205ENST00000542420 CFAP77Q6ZQR2 320 aa8.72□□□□□ -1.01
SS18-205ENST00000542420 BEST3Q8N1M1 668 aa8.72□□□□□ -1.01
SS18-205ENST00000542420 TMEM156Q8N614 296 aa8.72□□□□□ -1.01
SS18-205ENST00000542420 OR8H1Q8NGG4 311 aa8.72□□□□□ -1.01
SS18-205ENST00000542420 GCDHQ92947 438 aaPredicted RBP8.72□□□□□ -1.01
SS18-205ENST00000542420 SHARPINQ9H0F6 387 aa8.72□□□□□ -1.01
SS18-205ENST00000542420 CLEC4MQ9H2X3 399 aaPredicted RBP8.72□□□□□ -1.01
SS18-205ENST00000542420 IFT46Q9NQC8 304 aa8.72□□□□□ -1.01
SS18-205ENST00000542420 NKIRAS2Q9NYR9 191 aa8.72□□□□□ -1.01
SS18-205ENST00000542420 MRPL15Q9P015 296 aaKnown RBP8.72□□□□□ -1.01
SS18-205ENST00000542420 MGAT4CQ9UBM8 478 aa8.72□□□□□ -1.01
SS18-205ENST00000542420 ZNF391Q9UJN7 358 aa8.72□□□□□ -1.01
SS18-205ENST00000542420 FOXD3Q9UJU5 478 aaPredicted RBP8.72□□□□□ -1.01
SS18-205ENST00000542420 PADI1Q9ULC6 663 aa8.72□□□□□ -1.01
SS18-205ENST00000542420 FLVCR2Q9UPI3 526 aa8.72□□□□□ -1.01
SS18-205ENST00000542420 ALPK2Q86TB3 2170 aa8.72□□□□□ -1.01
SS18-205ENST00000542420 NPIPA2E9PIF3 369 aa8.72□□□□□ -1.01
SS18-205ENST00000542420 NPIPA3F8WFD2 350 aa8.72□□□□□ -1.01
SS18-205ENST00000542420 PYCARD-AS1I3L0S3 204 aa8.72□□□□□ -1.01
SS18-205ENST00000542420 RAB27BO00194 218 aa8.72□□□□□ -1.01
SS18-205ENST00000542420 KDM4BO94953 1096 aa8.72□□□□□ -1.01
SS18-205ENST00000542420 SERPINA7P05543 415 aa8.72□□□□□ -1.01
SS18-205ENST00000542420 CCL3P10147 92 aa8.72□□□□□ -1.01
SS18-205ENST00000542420 RRASP10301 218 aa8.72□□□□□ -1.01
SS18-205ENST00000542420 CCL4P13236 92 aa8.72□□□□□ -1.01
SS18-205ENST00000542420 S100A12P80511 92 aa8.72□□□□□ -1.01
SS18-205ENST00000542420 MRPS34P82930 218 aaKnown RBP8.72□□□□□ -1.01
SS18-205ENST00000542420 SPOCK1Q08629 439 aa8.72□□□□□ -1.01
SS18-205ENST00000542420 ECH1Q13011 328 aa8.72□□□□□ -1.01
SS18-205ENST00000542420 BTN1A1Q13410 526 aa8.72□□□□□ -1.01
SS18-205ENST00000542420 GK2Q14410 553 aaPredicted RBP8.72□□□□□ -1.01
SS18-205ENST00000542420 PPA1Q15181 289 aa8.72□□□□□ -1.01
SS18-205ENST00000542420 MTFR2Q6P444 385 aa8.72□□□□□ -1.01
SS18-205ENST00000542420 C6orf15Q6UXA7 325 aaPredicted RBP8.72□□□□□ -1.01
SS18-205ENST00000542420 Q6ZTK2 550 aa8.72□□□□□ -1.01
SS18-205ENST00000542420 PPP1R32Q7Z5V6 425 aa8.72□□□□□ -1.01
SS18-205ENST00000542420 C20orf196Q8IYI0 205 aa8.72□□□□□ -1.01
SS18-205ENST00000542420 OR9K2Q8NGE7 335 aa8.72□□□□□ -1.01
SS18-205ENST00000542420 OR51A2Q8NGJ7 313 aa8.72□□□□□ -1.01
SS18-205ENST00000542420 KCNG3Q8TAE7 436 aa8.72□□□□□ -1.01
SS18-205ENST00000542420 PP6455Q8WZ26 134 aa8.72□□□□□ -1.01
SS18-205ENST00000542420 LIN37Q96GY3 246 aaPredicted RBP8.72□□□□□ -1.01
SS18-205ENST00000542420 TAAR9Q96RI9 348 aa8.72□□□□□ -1.01
SS18-205ENST00000542420 CNTD2Q9H8S5 307 aa8.72□□□□□ -1.01
SS18-205ENST00000542420 AKIRIN1Q9H9L7 192 aaPredicted RBP8.72□□□□□ -1.01
SS18-205ENST00000542420 FSCN3Q9NQT6 498 aa8.72□□□□□ -1.01
SS18-205ENST00000542420 ZNF224Q9NZL3 707 aa8.72□□□□□ -1.01
SS18-205ENST00000542420 PIPOXQ9P0Z9 390 aa8.72□□□□□ -1.01
SS18-205ENST00000542420 CGGBP1Q9UFW8 167 aaPredicted RBP8.72□□□□□ -1.01
SS18-205ENST00000542420 V9GYS6 101 aa8.72□□□□□ -1.01
SS18-205ENST00000542420 ZNF736B4DX44 427 aaPredicted RBP8.71□□□□□ -1.01
SS18-205ENST00000542420 G3V3Q6 166 aa8.71□□□□□ -1.01
SS18-205ENST00000542420 GPR37O15354 613 aa8.71□□□□□ -1.01
SS18-205ENST00000542420 DHHO43323 396 aa8.71□□□□□ -1.01
SS18-205ENST00000542420 P04436 131 aa8.71□□□□□ -1.01
SS18-205ENST00000542420 HLA-GP17693 338 aa8.71□□□□□ -1.01
SS18-205ENST00000542420 CX3CR1P49238 355 aa8.71□□□□□ -1.01
SS18-205ENST00000542420 CLDN17P56750 224 aa8.71□□□□□ -1.01
SS18-205ENST00000542420 UBE2MP61081 183 aaKnown RBP8.71□□□□□ -1.01
SS18-205ENST00000542420 GRK1Q15835 563 aa8.71□□□□□ -1.01
SS18-205ENST00000542420 NRN1LQ496H8 165 aa8.71□□□□□ -1.01
SS18-205ENST00000542420 CLLU1Q5K131 121 aa8.71□□□□□ -1.01
SS18-205ENST00000542420 CORO6Q6QEF8 472 aa8.71□□□□□ -1.01
SS18-205ENST00000542420 ZNF584Q8IVC4 421 aa8.71□□□□□ -1.01
SS18-205ENST00000542420 OR8B12Q8NGG6 310 aa8.71□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms