RNA–Protein interactions for RNA: ENST00000540669.1

VPS33A-204, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 455 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-204ENST00000540669 LINC01560Q8TB33 94 aa9.09□□□□□ -0.95
VPS33A-204ENST00000540669 MGLLQ99685 303 aa9.09□□□□□ -0.95
VPS33A-204ENST00000540669 MED18Q9BUE0 208 aa9.09□□□□□ -0.95
VPS33A-204ENST00000540669 RNF121Q9H920 327 aa9.09□□□□□ -0.95
VPS33A-204ENST00000540669 ASH1LQ9NR48 2969 aaKnown RBP9.09□□□□□ -0.95
VPS33A-204ENST00000540669 CENPMQ9NSP4 180 aa9.09□□□□□ -0.95
VPS33A-204ENST00000540669 NDUFB11Q9NX14 153 aa9.09□□□□□ -0.95
VPS33A-204ENST00000540669 NDRG3Q9UGV2 375 aa9.09□□□□□ -0.95
VPS33A-204ENST00000540669 ZNF391Q9UJN7 358 aa9.09□□□□□ -0.95
VPS33A-204ENST00000540669 SNX5Q9Y5X3 404 aa9.09□□□□□ -0.95
VPS33A-204ENST00000540669 IGLV3-9A0A075B6K5 115 aa9.08□□□□□ -0.96
VPS33A-204ENST00000540669 TRBV5-5A0A0J9YX44 114 aa9.08□□□□□ -0.96
VPS33A-204ENST00000540669 hCG_38984A0A1B0GV85 526 aa9.08□□□□□ -0.96
VPS33A-204ENST00000540669 TMEM269A0A1B0GVZ9 245 aa9.08□□□□□ -0.96
VPS33A-204ENST00000540669 A0A1W2PPR1 153 aa9.08□□□□□ -0.96
VPS33A-204ENST00000540669 C5orf49A4QMS7 147 aa9.08□□□□□ -0.96
VPS33A-204ENST00000540669 TMEM212A6NML5 194 aa9.08□□□□□ -0.96
VPS33A-204ENST00000540669 DHRS7CA6NNS2 312 aa9.08□□□□□ -0.96
VPS33A-204ENST00000540669 ATP6V1G2-DDX39BF2Z307 99 aa9.08□□□□□ -0.96
VPS33A-204ENST00000540669 LOC110117498-PIK3R3F6TDL0 507 aa9.08□□□□□ -0.96
VPS33A-204ENST00000540669 J3QLW9 94 aa9.08□□□□□ -0.96
VPS33A-204ENST00000540669 GPRIN2O60269 458 aa9.08□□□□□ -0.96
VPS33A-204ENST00000540669 NGFP01138 241 aa9.08□□□□□ -0.96
VPS33A-204ENST00000540669 CCL2P13500 99 aa9.08□□□□□ -0.96
VPS33A-204ENST00000540669 ZNF19P17023 458 aa9.08□□□□□ -0.96
VPS33A-204ENST00000540669 NR4A1P22736 598 aa9.08□□□□□ -0.96
VPS33A-204ENST00000540669 TUBG1P23258 451 aa9.08□□□□□ -0.96
VPS33A-204ENST00000540669 APLNRP35414 380 aa9.08□□□□□ -0.96
VPS33A-204ENST00000540669 LIPAP38571 399 aa9.08□□□□□ -0.96
VPS33A-204ENST00000540669 PSMB10P40306 273 aa9.08□□□□□ -0.96
VPS33A-204ENST00000540669 ASPHD2Q6ICH7 369 aa9.08□□□□□ -0.96
VPS33A-204ENST00000540669 ADAM5Q6NVV9 412 aa9.08□□□□□ -0.96
VPS33A-204ENST00000540669 WFDC8Q8IUA0 241 aa9.08□□□□□ -0.96
VPS33A-204ENST00000540669 PHC2Q8IXK0 858 aa9.08□□□□□ -0.96
VPS33A-204ENST00000540669 C1orf174Q8IYL3 243 aa9.08□□□□□ -0.96
VPS33A-204ENST00000540669 OR1J2Q8NGS2 313 aa9.08□□□□□ -0.96
VPS33A-204ENST00000540669 TMEM171Q8WVE6 324 aa9.08□□□□□ -0.96
VPS33A-204ENST00000540669 GATAD2BQ8WXI9 593 aa9.08□□□□□ -0.96
VPS33A-204ENST00000540669 APOBEC3DQ96AK3 386 aaPredicted RBP9.08□□□□□ -0.96
VPS33A-204ENST00000540669 LYZL4Q96KX0 146 aa9.08□□□□□ -0.96
VPS33A-204ENST00000540669 CCDC90BQ9GZT6 254 aa9.08□□□□□ -0.96
VPS33A-204ENST00000540669 PBOV1Q9GZY1 135 aa9.08□□□□□ -0.96
VPS33A-204ENST00000540669 POFUT1Q9H488 388 aa9.08□□□□□ -0.96
VPS33A-204ENST00000540669 RGCCQ9H4X1 137 aa9.08□□□□□ -0.96
VPS33A-204ENST00000540669 ZNF442Q9H7R0 627 aa9.08□□□□□ -0.96
VPS33A-204ENST00000540669 NGBQ9NPG2 151 aa9.08□□□□□ -0.96
VPS33A-204ENST00000540669 TUBG2Q9NRH3 451 aa9.08□□□□□ -0.96
VPS33A-204ENST00000540669 CHCHD3Q9NX63 227 aaKnown RBP9.08□□□□□ -0.96
VPS33A-204ENST00000540669 KCNN3Q9UGI6 736 aa9.08□□□□□ -0.96
VPS33A-204ENST00000540669 OR52A1Q9UKL2 312 aa9.08□□□□□ -0.96
VPS33A-204ENST00000540669 ARFGEF3Q5TH69 2177 aa9.07□□□□□ -0.96
VPS33A-204ENST00000540669 LOC107986453A0A1B0GWG9 222 aa9.07□□□□□ -0.96
VPS33A-204ENST00000540669 F5H5K5 113 aa9.07□□□□□ -0.96
VPS33A-204ENST00000540669 CASKO14936 926 aa9.07□□□□□ -0.96
VPS33A-204ENST00000540669 CLPTM1O96005 669 aa9.07□□□□□ -0.96
VPS33A-204ENST00000540669 UBCP0CG48 685 aaKnown RBP9.07□□□□□ -0.96
VPS33A-204ENST00000540669 SLC2A1P11166 492 aa9.07□□□□□ -0.96
VPS33A-204ENST00000540669 ZNF250P15622 560 aa9.07□□□□□ -0.96
VPS33A-204ENST00000540669 ACHEP22303 614 aa9.07□□□□□ -0.96
VPS33A-204ENST00000540669 GALP22466 123 aa9.07□□□□□ -0.96
VPS33A-204ENST00000540669 HSD11B1P28845 292 aa9.07□□□□□ -0.96
VPS33A-204ENST00000540669 GLRXP35754 106 aa9.07□□□□□ -0.96
VPS33A-204ENST00000540669 KIR2DL3P43628 341 aa9.07□□□□□ -0.96
VPS33A-204ENST00000540669 GBX2P52951 348 aaPredicted RBP9.07□□□□□ -0.96
VPS33A-204ENST00000540669 NR1H2P55055 460 aa9.07□□□□□ -0.96
VPS33A-204ENST00000540669 BLMHQ13867 455 aa9.07□□□□□ -0.96
VPS33A-204ENST00000540669 SNTB1Q13884 538 aaKnown RBP9.07□□□□□ -0.96
VPS33A-204ENST00000540669 MED22Q15528 200 aa9.07□□□□□ -0.96
VPS33A-204ENST00000540669 TIGD6Q17RP2 521 aa9.07□□□□□ -0.96
VPS33A-204ENST00000540669 GLYATL3Q5SZD4 288 aa9.07□□□□□ -0.96
VPS33A-204ENST00000540669 BCL2L15Q5TBC7 163 aa9.07□□□□□ -0.96
VPS33A-204ENST00000540669 BRICD5Q6PL45 260 aa9.07□□□□□ -0.96
VPS33A-204ENST00000540669 ZNF283Q8N7M2 679 aa9.07□□□□□ -0.96
VPS33A-204ENST00000540669 OR10AC1Q8NH08 325 aa9.07□□□□□ -0.96
VPS33A-204ENST00000540669 LILRB1Q8NHL6 650 aaPredicted RBP9.07□□□□□ -0.96
VPS33A-204ENST00000540669 IGFBPL1Q8WX77 278 aa9.07□□□□□ -0.96
VPS33A-204ENST00000540669 PPP1R14AQ96A00 147 aa9.07□□□□□ -0.96
VPS33A-204ENST00000540669 YIPF6Q96EC8 236 aa9.07□□□□□ -0.96
VPS33A-204ENST00000540669 MARS2Q96GW9 593 aaKnown RBP9.07□□□□□ -0.96
VPS33A-204ENST00000540669 C1QTNF6Q9BXI9 259 aa9.07□□□□□ -0.96
VPS33A-204ENST00000540669 RBM38Q9H0Z9 239 aaKnown RBP9.07□□□□□ -0.96
VPS33A-204ENST00000540669 OPA3Q9H6K4 179 aa9.07□□□□□ -0.96
VPS33A-204ENST00000540669 SLC22A13Q9Y226 551 aa9.07□□□□□ -0.96
VPS33A-204ENST00000540669 V9GYS6 101 aa9.07□□□□□ -0.96
VPS33A-204ENST00000540669 ITPR2Q14571 2701 aa9.06□□□□□ -0.96
VPS33A-204ENST00000540669 TRBV5-7A0A0A0MS05 114 aa9.06□□□□□ -0.96
VPS33A-204ENST00000540669 M0R1B8 84 aa9.06□□□□□ -0.96
VPS33A-204ENST00000540669 ABCD4O14678 606 aa9.06□□□□□ -0.96
VPS33A-204ENST00000540669 XRCC2O43543 280 aa9.06□□□□□ -0.96
VPS33A-204ENST00000540669 CRYAAP02489 173 aa9.06□□□□□ -0.96
VPS33A-204ENST00000540669 RPSAP08865 295 aaKnown RBP9.06□□□□□ -0.96
VPS33A-204ENST00000540669 ATP6V1B1P15313 513 aa9.06□□□□□ -0.96
VPS33A-204ENST00000540669 COL8A1P27658 744 aa9.06□□□□□ -0.96
VPS33A-204ENST00000540669 GABRA5P31644 462 aa9.06□□□□□ -0.96
VPS33A-204ENST00000540669 UCP2P55851 309 aa9.06□□□□□ -0.96
VPS33A-204ENST00000540669 GALK2Q01415 458 aa9.06□□□□□ -0.96
VPS33A-204ENST00000540669 GK2Q14410 553 aaPredicted RBP9.06□□□□□ -0.96
VPS33A-204ENST00000540669 NEDD8Q15843 81 aa9.06□□□□□ -0.96
VPS33A-204ENST00000540669 MBNL2Q5VZF2 373 aaKnown RBP9.06□□□□□ -0.96
VPS33A-204ENST00000540669 TMEM42Q69YG0 159 aa9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms