RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 SAP18O00422 153 aaKnown RBP2.8□□□□□ -1.96
CD44-235ENST00000532339 SLC17A2O00624 439 aa2.8□□□□□ -1.96
CD44-235ENST00000532339 OR7A17O14581 309 aa2.8□□□□□ -1.96
CD44-235ENST00000532339 CA1P00915 261 aaPredicted RBP2.8□□□□□ -1.96
CD44-235ENST00000532339 NPIPA8P0DM63 369 aa2.8□□□□□ -1.96
CD44-235ENST00000532339 LAP3P28838 519 aa2.8□□□□□ -1.96
CD44-235ENST00000532339 GTF2H1P32780 548 aa2.8□□□□□ -1.96
CD44-235ENST00000532339 SULT1E1P49888 294 aa2.8□□□□□ -1.96
CD44-235ENST00000532339 LIM2P55344 173 aa2.8□□□□□ -1.96
CD44-235ENST00000532339 CHRNB3Q05901 458 aa2.8□□□□□ -1.96
CD44-235ENST00000532339 BSPH1Q075Z2 132 aa2.8□□□□□ -1.96
CD44-235ENST00000532339 PUDPQ08623 228 aa2.8□□□□□ -1.96
CD44-235ENST00000532339 ZNF154Q13106 437 aa2.8□□□□□ -1.96
CD44-235ENST00000532339 CRMP1Q14194 572 aa2.8□□□□□ -1.96
CD44-235ENST00000532339 CYP51A1Q16850 503 aa2.8□□□□□ -1.96
CD44-235ENST00000532339 TIGITQ495A1 244 aa2.8□□□□□ -1.96
CD44-235ENST00000532339 OR2A2Q6IF42 318 aa2.8□□□□□ -1.96
CD44-235ENST00000532339 BAIAP2L2Q6UXY1 529 aa2.8□□□□□ -1.96
CD44-235ENST00000532339 RTL4Q6ZR62 310 aa2.8□□□□□ -1.96
CD44-235ENST00000532339 RUFY3Q7L099 469 aa2.8□□□□□ -1.96
CD44-235ENST00000532339 NT5DC3Q86UY8 548 aa2.8□□□□□ -1.96
CD44-235ENST00000532339 UMODL1-AS1Q8N2C9 162 aa2.8□□□□□ -1.96
CD44-235ENST00000532339 CNEP1R1Q8N9A8 125 aa2.8□□□□□ -1.96
CD44-235ENST00000532339 OR9A4Q8NGU2 314 aa2.8□□□□□ -1.96
CD44-235ENST00000532339 OR51F2Q8NH61 342 aa2.8□□□□□ -1.96
CD44-235ENST00000532339 PIGCQ92535 297 aa2.8□□□□□ -1.96
CD44-235ENST00000532339 PELI1Q96FA3 418 aa2.8□□□□□ -1.96
CD44-235ENST00000532339 TMEM80Q96HE8 168 aa2.8□□□□□ -1.96
CD44-235ENST00000532339 SH3YL1Q96HL8 342 aaPredicted RBP2.8□□□□□ -1.96
CD44-235ENST00000532339 LYSMD1Q96S90 227 aa2.8□□□□□ -1.96
CD44-235ENST00000532339 NRTNQ99748 197 aa2.8□□□□□ -1.96
CD44-235ENST00000532339 CNPY3Q9BT09 278 aa2.8□□□□□ -1.96
CD44-235ENST00000532339 ACTR6Q9GZN1 396 aa2.8□□□□□ -1.96
CD44-235ENST00000532339 MAGT1Q9H0U3 335 aa2.8□□□□□ -1.96
CD44-235ENST00000532339 IKZF5Q9H5V7 419 aa2.8□□□□□ -1.96
CD44-235ENST00000532339 XKR8Q9H6D3 395 aa2.8□□□□□ -1.96
CD44-235ENST00000532339 FANCFQ9NPI8 374 aa2.8□□□□□ -1.96
CD44-235ENST00000532339 TIGARQ9NQ88 270 aa2.8□□□□□ -1.96
CD44-235ENST00000532339 UFSP2Q9NUQ7 469 aa2.8□□□□□ -1.96
CD44-235ENST00000532339 SMOXQ9NWM0 555 aa2.8□□□□□ -1.96
CD44-235ENST00000532339 RAB20Q9NX57 234 aa2.8□□□□□ -1.96
CD44-235ENST00000532339 IMPAD1Q9NX62 359 aa2.8□□□□□ -1.96
CD44-235ENST00000532339 CLEC4AQ9UMR7 237 aa2.8□□□□□ -1.96
CD44-235ENST00000532339 BOKQ9UMX3 212 aaPredicted RBP2.8□□□□□ -1.96
CD44-235ENST00000532339 YARS2Q9Y2Z4 477 aaKnown RBP2.8□□□□□ -1.96
CD44-235ENST00000532339 RRP15Q9Y3B9 282 aaKnown RBP2.8□□□□□ -1.96
CD44-235ENST00000532339 TRAV9-2A0A087WT02 112 aa2.79□□□□□ -1.96
CD44-235ENST00000532339 A0A0G2JMP0 313 aa2.79□□□□□ -1.96
CD44-235ENST00000532339 A0A0X1KG70 313 aa2.79□□□□□ -1.96
CD44-235ENST00000532339 METTL21EPA6NDL7 271 aa2.79□□□□□ -1.96
CD44-235ENST00000532339 MGAT4DA6NG13 374 aa2.79□□□□□ -1.96
CD44-235ENST00000532339 OR6C65A6NJZ3 312 aa2.79□□□□□ -1.96
CD44-235ENST00000532339 RTL8CO15255 209 aa2.79□□□□□ -1.96
CD44-235ENST00000532339 EMC8O43402 210 aa2.79□□□□□ -1.96
CD44-235ENST00000532339 PFKFB2O60825 505 aa2.79□□□□□ -1.96
CD44-235ENST00000532339 SH3BGRLO75368 114 aa2.79□□□□□ -1.96
CD44-235ENST00000532339 STAMBPO95630 424 aa2.79□□□□□ -1.96
CD44-235ENST00000532339 P04436 131 aa2.79□□□□□ -1.96
CD44-235ENST00000532339 CD55P08174 381 aa2.79□□□□□ -1.96
CD44-235ENST00000532339 RBMY1CP0DJD4 496 aa2.79□□□□□ -1.96
CD44-235ENST00000532339 LAMP1P11279 417 aa2.79□□□□□ -1.96
CD44-235ENST00000532339 ZNF44P15621 663 aa2.79□□□□□ -1.96
CD44-235ENST00000532339 PTBP1P26599 531 aaKnown RBP eCLIP2.79□□□□□ -1.96
CD44-235ENST00000532339 PBLDP30039 288 aaPredicted RBP2.79□□□□□ -1.96
CD44-235ENST00000532339 CDH5P33151 784 aaPredicted RBP2.79□□□□□ -1.96
CD44-235ENST00000532339 TAGLN2P37802 199 aaKnown RBP2.79□□□□□ -1.96
CD44-235ENST00000532339 HSPA9P38646 679 aaKnown RBP2.79□□□□□ -1.96
CD44-235ENST00000532339 ELK3P41970 407 aa2.79□□□□□ -1.96
CD44-235ENST00000532339 OR4D2P58180 307 aa2.79□□□□□ -1.96
CD44-235ENST00000532339 ENPEPQ07075 957 aa2.79□□□□□ -1.96
CD44-235ENST00000532339 RIPPLY1Q0D2K3 151 aa2.79□□□□□ -1.96
CD44-235ENST00000532339 LRRC74AQ0VAA2 488 aa2.79□□□□□ -1.96
CD44-235ENST00000532339 LAGE3Q14657 143 aa2.79□□□□□ -1.96
CD44-235ENST00000532339 SLC25A52Q3SY17 297 aa2.79□□□□□ -1.96
CD44-235ENST00000532339 MEDAGQ5VYS4 303 aa2.79□□□□□ -1.96
CD44-235ENST00000532339 OR8G2PQ6IF36 304 aa2.79□□□□□ -1.96
CD44-235ENST00000532339 UFSP1Q6NVU6 142 aa2.79□□□□□ -1.96
CD44-235ENST00000532339 VSTM4Q8IW00 320 aa2.79□□□□□ -1.96
CD44-235ENST00000532339 NELFCDQ8IXH7 590 aa2.79□□□□□ -1.96
CD44-235ENST00000532339 ZBED8Q8IZ13 594 aa2.79□□□□□ -1.96
CD44-235ENST00000532339 SLC38A6Q8IZM9 456 aa2.79□□□□□ -1.96
CD44-235ENST00000532339 TMEM123Q8N131 208 aa2.79□□□□□ -1.96
CD44-235ENST00000532339 Q8N7P7 452 aa2.79□□□□□ -1.96
CD44-235ENST00000532339 PLPP5Q8NEB5 264 aa2.79□□□□□ -1.96
CD44-235ENST00000532339 FBXL13Q8NEE6 735 aa2.79□□□□□ -1.96
CD44-235ENST00000532339 STXBP6Q8NFX7 210 aa2.79□□□□□ -1.96
CD44-235ENST00000532339 OR2T33Q8NG76 320 aa2.79□□□□□ -1.96
CD44-235ENST00000532339 OR4M2Q8NGB6 313 aa2.79□□□□□ -1.96
CD44-235ENST00000532339 LINC01006Q8NI28 216 aa2.79□□□□□ -1.96
CD44-235ENST00000532339 COQ2Q96H96 371 aa2.79□□□□□ -1.96
CD44-235ENST00000532339 SMIM14Q96QK8 99 aa2.79□□□□□ -1.96
CD44-235ENST00000532339 CCT7Q99832 543 aa2.79□□□□□ -1.96
CD44-235ENST00000532339 DHRS9Q9BPW9 319 aa2.79□□□□□ -1.96
CD44-235ENST00000532339 UGT2B28Q9BY64 529 aa2.79□□□□□ -1.96
CD44-235ENST00000532339 CENPHQ9H3R5 247 aa2.79□□□□□ -1.96
CD44-235ENST00000532339 LRRC19Q9H756 370 aa2.79□□□□□ -1.96
CD44-235ENST00000532339 LRRC40Q9H9A6 602 aa2.79□□□□□ -1.96
CD44-235ENST00000532339 DMAC2Q9NW81 257 aa2.79□□□□□ -1.96
CD44-235ENST00000532339 CLEC5AQ9NY25 188 aa2.79□□□□□ -1.96
CD44-235ENST00000532339 SIGLEC8Q9NYZ4 499 aa2.79□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 76.9 ms