RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 RAB29O14966 203 aa2.03□□□□□ -2.08
CD44-233ENST00000531141 CCNKO75909 580 aa2.03□□□□□ -2.08
CD44-233ENST00000531141 YIF1AO95070 293 aa2.03□□□□□ -2.08
CD44-233ENST00000531141 TSPAN13O95857 204 aa2.03□□□□□ -2.08
CD44-233ENST00000531141 APCSP02743 223 aa2.03□□□□□ -2.08
CD44-233ENST00000531141 TROVE2P10155 538 aaKnown RBP eCLIP2.03□□□□□ -2.08
CD44-233ENST00000531141 CELP19835 753 aa2.03□□□□□ -2.08
CD44-233ENST00000531141 SSTR5P35346 364 aa2.03□□□□□ -2.08
CD44-233ENST00000531141 TAGLN2P37802 199 aaKnown RBP2.03□□□□□ -2.08
CD44-233ENST00000531141 NAA10P41227 235 aaPredicted RBP2.03□□□□□ -2.08
CD44-233ENST00000531141 CACNG7P62955 275 aa2.03□□□□□ -2.08
CD44-233ENST00000531141 ZNF816Q0VGE8 651 aaPredicted RBP2.03□□□□□ -2.08
CD44-233ENST00000531141 OR7A5Q15622 319 aa2.03□□□□□ -2.08
CD44-233ENST00000531141 ORMDL2Q53FV1 153 aa2.03□□□□□ -2.08
CD44-233ENST00000531141 METTL21CQ5VZV1 264 aa2.03□□□□□ -2.08
CD44-233ENST00000531141 PLET1Q6UQ28 207 aa2.03□□□□□ -2.08
CD44-233ENST00000531141 SASS6Q6UVJ0 657 aa2.03□□□□□ -2.08
CD44-233ENST00000531141 RNF139Q8WU17 664 aa2.03□□□□□ -2.08
CD44-233ENST00000531141 TPD52L3Q96J77 140 aa2.03□□□□□ -2.08
CD44-233ENST00000531141 DOK1Q99704 481 aa2.03□□□□□ -2.08
CD44-233ENST00000531141 ULBP2Q9BZM5 246 aa2.03□□□□□ -2.08
CD44-233ENST00000531141 SPNS1Q9H2V7 528 aa2.03□□□□□ -2.08
CD44-233ENST00000531141 TRMT112Q9UI30 125 aaKnown RBP2.03□□□□□ -2.08
CD44-233ENST00000531141 WIF1Q9Y5W5 379 aa2.03□□□□□ -2.08
CD44-233ENST00000531141 PTPRZ1P23471 2315 aaPredicted RBP2.03□□□□□ -2.08
CD44-233ENST00000531141 WNK3Q9BYP7 1800 aa2.03□□□□□ -2.09
CD44-233ENST00000531141 KMT2BQ9UMN6 2715 aaPredicted RBP2.03□□□□□ -2.09
CD44-233ENST00000531141 RBBP6Q7Z6E9 1792 aaKnown RBP2.03□□□□□ -2.09
CD44-233ENST00000531141 RGPD5Q99666 1765 aa2.03□□□□□ -2.09
CD44-233ENST00000531141 FASNP49327 2511 aaKnown RBP2.02□□□□□ -2.09
CD44-233ENST00000531141 FLNBO75369 2602 aaKnown RBP2.02□□□□□ -2.09
CD44-233ENST00000531141 IGLV3-12A0A075B6K2 115 aa2.02□□□□□ -2.09
CD44-233ENST00000531141 HEATR9A2RTY3 570 aa2.02□□□□□ -2.09
CD44-233ENST00000531141 LYRM9A8MSI8 78 aa2.02□□□□□ -2.09
CD44-233ENST00000531141 PALMO75781 387 aa2.02□□□□□ -2.09
CD44-233ENST00000531141 UQCRFS1P1P0C7P4 283 aa2.02□□□□□ -2.09
CD44-233ENST00000531141 GPX4P36969 197 aaPredicted RBP2.02□□□□□ -2.09
CD44-233ENST00000531141 CEACAM3P40198 252 aa2.02□□□□□ -2.09
CD44-233ENST00000531141 CSNK1EP49674 416 aaKnown RBP2.02□□□□□ -2.09
CD44-233ENST00000531141 TMED10P49755 219 aaKnown RBP2.02□□□□□ -2.09
CD44-233ENST00000531141 CDH6P55285 790 aa2.02□□□□□ -2.09
CD44-233ENST00000531141 UBE2NP61088 152 aaKnown RBP2.02□□□□□ -2.09
CD44-233ENST00000531141 PITPNAQ00169 270 aa2.02□□□□□ -2.09
CD44-233ENST00000531141 CDC20Q12834 499 aa2.02□□□□□ -2.09
CD44-233ENST00000531141 KPRPQ5T749 579 aaPredicted RBP2.02□□□□□ -2.09
CD44-233ENST00000531141 MMAAQ8IVH4 418 aaKnown RBP2.02□□□□□ -2.09
CD44-233ENST00000531141 IQCKQ8N0W5 287 aa2.02□□□□□ -2.09
CD44-233ENST00000531141 METTL13Q8N6R0 699 aa2.02□□□□□ -2.09
CD44-233ENST00000531141 GATSQ8NAP1 163 aa2.02□□□□□ -2.09
CD44-233ENST00000531141 OR56B2PQ8NGI1 322 aa2.02□□□□□ -2.09
CD44-233ENST00000531141 OR8U1Q8NH10 309 aa2.02□□□□□ -2.09
CD44-233ENST00000531141 OR5B3Q8NH48 314 aa2.02□□□□□ -2.09
CD44-233ENST00000531141 OR52P1PQ8NH57 321 aa2.02□□□□□ -2.09
CD44-233ENST00000531141 RMI2Q96E14 147 aa2.02□□□□□ -2.09
CD44-233ENST00000531141 RBMXL1Q96E39 390 aaKnown RBP2.02□□□□□ -2.09
CD44-233ENST00000531141 NEURL3Q96EH8 262 aa2.02□□□□□ -2.09
CD44-233ENST00000531141 RNF5Q99942 180 aa2.02□□□□□ -2.09
CD44-233ENST00000531141 MICU1Q9BPX6 476 aa2.02□□□□□ -2.09
CD44-233ENST00000531141 RACGAP1Q9H0H5 632 aa2.02□□□□□ -2.09
CD44-233ENST00000531141 S4R3C0 116 aa2.02□□□□□ -2.09
CD44-233ENST00000531141 FER1L6Q2WGJ9 1857 aa2.02□□□□□ -2.09
CD44-233ENST00000531141 CDH23Q9H251 3354 aa2.01□□□□□ -2.09
CD44-233ENST00000531141 DAPK1P53355 1430 aa2.01□□□□□ -2.09
CD44-233ENST00000531141 KIF1BO60333 1816 aa2.01□□□□□ -2.09
CD44-233ENST00000531141 ZNF292O60281 2723 aa2.01□□□□□ -2.09
CD44-233ENST00000531141 PPLO60437 1756 aa2.01□□□□□ -2.09
CD44-233ENST00000531141 SCN11AQ9UI33 1791 aa2.01□□□□□ -2.09
CD44-233ENST00000531141 ZFHX2Q9C0A1 2572 aaPredicted RBP2.01□□□□□ -2.09
CD44-233ENST00000531141 TRAV6A0A075B6T7 132 aa2.01□□□□□ -2.09
CD44-233ENST00000531141 IGHV1OR15-9A0A0B4J2B8 117 aa2.01□□□□□ -2.09
CD44-233ENST00000531141 OR6C74A6NCV1 312 aa2.01□□□□□ -2.09
CD44-233ENST00000531141 LRRIQ3A6PVS8 624 aaPredicted RBP2.01□□□□□ -2.09
CD44-233ENST00000531141 ZNF850A8MQ14 1090 aa2.01□□□□□ -2.09
CD44-233ENST00000531141 RPL36A-HNRNPH2H7BZ11 118 aa2.01□□□□□ -2.09
CD44-233ENST00000531141 NUPL2O15504 423 aaKnown RBP2.01□□□□□ -2.09
CD44-233ENST00000531141 KLHL41O60662 606 aa2.01□□□□□ -2.09
CD44-233ENST00000531141 CCNE2O96020 404 aa2.01□□□□□ -2.09
CD44-233ENST00000531141 SERPINA5P05154 406 aa2.01□□□□□ -2.09
CD44-233ENST00000531141 ANXA5P08758 320 aa2.01□□□□□ -2.09
CD44-233ENST00000531141 CD3GP09693 182 aa2.01□□□□□ -2.09
CD44-233ENST00000531141 ACSM4P0C7M7 580 aa2.01□□□□□ -2.09
CD44-233ENST00000531141 ZNF250P15622 560 aa2.01□□□□□ -2.09
CD44-233ENST00000531141 RRM2P31350 389 aa2.01□□□□□ -2.09
CD44-233ENST00000531141 OPRK1P41145 380 aa2.01□□□□□ -2.09
CD44-233ENST00000531141 CXCL12P48061 93 aa2.01□□□□□ -2.09
CD44-233ENST00000531141 PIGHQ14442 188 aaPredicted RBP2.01□□□□□ -2.09
CD44-233ENST00000531141 ZNF726P1Q15940 193 aa2.01□□□□□ -2.09
CD44-233ENST00000531141 AVPI1Q5T686 147 aa2.01□□□□□ -2.09
CD44-233ENST00000531141 C9orf135Q5VTT2 229 aa2.01□□□□□ -2.09
CD44-233ENST00000531141 UBE2UQ5VVX9 321 aa2.01□□□□□ -2.09
CD44-233ENST00000531141 TMEM205Q6UW68 189 aa2.01□□□□□ -2.09
CD44-233ENST00000531141 SNX20Q7Z614 316 aa2.01□□□□□ -2.09
CD44-233ENST00000531141 TMEM150AQ86TG1 271 aa2.01□□□□□ -2.09
CD44-233ENST00000531141 OR7G2Q8NG99 324 aa2.01□□□□□ -2.09
CD44-233ENST00000531141 AKR7LQ8NHP1 331 aa2.01□□□□□ -2.09
CD44-233ENST00000531141 PIFOQ8TCI5 191 aa2.01□□□□□ -2.09
CD44-233ENST00000531141 KIFAP3Q92845 792 aa2.01□□□□□ -2.09
CD44-233ENST00000531141 FLYWCH2Q96CP2 140 aaKnown RBP2.01□□□□□ -2.09
CD44-233ENST00000531141 DUS3LQ96G46 650 aaKnown RBP2.01□□□□□ -2.09
CD44-233ENST00000531141 TIMM17AQ99595 171 aa2.01□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms