RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 SEC23BQ15437 767 aa11.81□□□□□ -0.52
CPSF1-201ENST00000526271 ZBED5Q49AG3 693 aa11.81□□□□□ -0.52
CPSF1-201ENST00000526271 HIST2H2BDQ6DRA6 164 aa11.81□□□□□ -0.52
CPSF1-201ENST00000526271 DUX4L9Q6RFH8 374 aaPredicted RBP11.81□□□□□ -0.52
CPSF1-201ENST00000526271 DCDC5Q6ZRR9 648 aa11.81□□□□□ -0.52
CPSF1-201ENST00000526271 GLB1L2Q8IW92 636 aa11.81□□□□□ -0.52
CPSF1-201ENST00000526271 FAM86B1Q8N7N1 296 aa11.81□□□□□ -0.52
CPSF1-201ENST00000526271 OR8B3Q8NGG8 313 aa11.81□□□□□ -0.52
CPSF1-201ENST00000526271 SLC7A13Q8TCU3 470 aa11.81□□□□□ -0.52
CPSF1-201ENST00000526271 FAM46AQ96IP4 442 aaKnown RBP11.81□□□□□ -0.52
CPSF1-201ENST00000526271 HSH2DQ96JZ2 352 aa11.81□□□□□ -0.52
CPSF1-201ENST00000526271 LRGUKQ96M69 825 aa11.81□□□□□ -0.52
CPSF1-201ENST00000526271 ZNF570Q96NI8 536 aa11.81□□□□□ -0.52
CPSF1-201ENST00000526271 RAB3IPQ96QF0 476 aaPredicted RBP11.81□□□□□ -0.52
CPSF1-201ENST00000526271 OR8B2Q96RD0 313 aa11.81□□□□□ -0.52
CPSF1-201ENST00000526271 GPX7Q96SL4 187 aaPredicted RBP11.81□□□□□ -0.52
CPSF1-201ENST00000526271 TRIM15Q9C019 465 aa11.81□□□□□ -0.52
CPSF1-201ENST00000526271 RASSF4Q9H2L5 321 aa11.81□□□□□ -0.52
CPSF1-201ENST00000526271 NMNAT1Q9HAN9 279 aaPredicted RBP11.81□□□□□ -0.52
CPSF1-201ENST00000526271 DUX4Q9UBX2 424 aa11.81□□□□□ -0.52
CPSF1-201ENST00000526271 PLXNB1O43157 2135 aa11.81□□□□□ -0.52
CPSF1-201ENST00000526271 HTR3EA5X5Y0 456 aa11.8□□□□□ -0.52
CPSF1-201ENST00000526271 C3orf80F5H4A9 247 aa11.8□□□□□ -0.52
CPSF1-201ENST00000526271 J3QW42 95 aa11.8□□□□□ -0.52
CPSF1-201ENST00000526271 SOCS2O14508 198 aa11.8□□□□□ -0.52
CPSF1-201ENST00000526271 PHYHO14832 338 aa11.8□□□□□ -0.52
CPSF1-201ENST00000526271 KHDRBS3O75525 346 aaKnown RBP11.8□□□□□ -0.52
CPSF1-201ENST00000526271 CLPXO76031 633 aa11.8□□□□□ -0.52
CPSF1-201ENST00000526271 PTBP3O95758 552 aaKnown RBP11.8□□□□□ -0.52
CPSF1-201ENST00000526271 ACSM4P0C7M7 580 aa11.8□□□□□ -0.52
CPSF1-201ENST00000526271 CD200P41217 278 aa11.8□□□□□ -0.52
CPSF1-201ENST00000526271 OMPP47874 163 aa11.8□□□□□ -0.52
CPSF1-201ENST00000526271 TRAM2Q15035 370 aa11.8□□□□□ -0.52
CPSF1-201ENST00000526271 ANKDD1AQ495B1 522 aa11.8□□□□□ -0.52
CPSF1-201ENST00000526271 IFI44LQ53G44 452 aa11.8□□□□□ -0.52
CPSF1-201ENST00000526271 C1orf146Q5VVC0 180 aa11.8□□□□□ -0.52
CPSF1-201ENST00000526271 BRICD5Q6PL45 260 aa11.8□□□□□ -0.52
CPSF1-201ENST00000526271 FKBP9P1Q75LS8 142 aa11.8□□□□□ -0.52
CPSF1-201ENST00000526271 RNF113BQ8IZP6 322 aaKnown RBP11.8□□□□□ -0.52
CPSF1-201ENST00000526271 PIP4P2Q8N4L2 257 aa11.8□□□□□ -0.52
CPSF1-201ENST00000526271 OR4F5Q8NH21 305 aa11.8□□□□□ -0.52
CPSF1-201ENST00000526271 APOBEC3DQ96AK3 386 aaPredicted RBP11.8□□□□□ -0.52
CPSF1-201ENST00000526271 C7orf34Q96L11 122 aa11.8□□□□□ -0.52
CPSF1-201ENST00000526271 PCGF1Q9BSM1 259 aa11.8□□□□□ -0.52
CPSF1-201ENST00000526271 FUZQ9BT04 418 aa11.8□□□□□ -0.52
CPSF1-201ENST00000526271 MMP27Q9H306 513 aa11.8□□□□□ -0.52
CPSF1-201ENST00000526271 RERGLQ9H628 205 aa11.8□□□□□ -0.52
CPSF1-201ENST00000526271 BEX1Q9HBH7 125 aa11.8□□□□□ -0.52
CPSF1-201ENST00000526271 UFSP2Q9NUQ7 469 aa11.8□□□□□ -0.52
CPSF1-201ENST00000526271 GRHPRQ9UBQ7 328 aa11.8□□□□□ -0.52
CPSF1-201ENST00000526271 CLN8Q9UBY8 286 aa11.8□□□□□ -0.52
CPSF1-201ENST00000526271 ATPIF1Q9UII2 106 aa11.8□□□□□ -0.52
CPSF1-201ENST00000526271 A0A0U1RQK1 487 aa11.79□□□□□ -0.52
CPSF1-201ENST00000526271 A0A1B0GUS0 222 aa11.79□□□□□ -0.52
CPSF1-201ENST00000526271 MEGF11A6BM72 1044 aa11.79□□□□□ -0.52
CPSF1-201ENST00000526271 IFNL4K9M1U5 179 aa11.79□□□□□ -0.52
CPSF1-201ENST00000526271 AHCYL1O43865 530 aa11.79□□□□□ -0.52
CPSF1-201ENST00000526271 GPR137BO60478 399 aa11.79□□□□□ -0.52
CPSF1-201ENST00000526271 CIB2O75838 187 aa11.79□□□□□ -0.52
CPSF1-201ENST00000526271 PPP1R3DO95685 299 aa11.79□□□□□ -0.52
CPSF1-201ENST00000526271 TXNDC12O95881 172 aa11.79□□□□□ -0.52
CPSF1-201ENST00000526271 SDHAP31040 664 aa11.79□□□□□ -0.52
CPSF1-201ENST00000526271 IFNA8P32881 189 aa11.79□□□□□ -0.52
CPSF1-201ENST00000526271 RPL4P36578 427 aaKnown RBP11.79□□□□□ -0.52
CPSF1-201ENST00000526271 GUCA1AP43080 201 aaPredicted RBP11.79□□□□□ -0.52
CPSF1-201ENST00000526271 SRP9P49458 86 aaKnown RBP11.79□□□□□ -0.52
CPSF1-201ENST00000526271 DLX1P56177 255 aa11.79□□□□□ -0.52
CPSF1-201ENST00000526271 PRB3Q04118 309 aaPredicted RBP11.79□□□□□ -0.52
CPSF1-201ENST00000526271 COX10Q12887 443 aa11.79□□□□□ -0.52
CPSF1-201ENST00000526271 ZNF362Q5T0B9 420 aaPredicted RBP11.79□□□□□ -0.52
CPSF1-201ENST00000526271 SFRP4Q6FHJ7 346 aaPredicted RBP11.79□□□□□ -0.52
CPSF1-201ENST00000526271 ZSCAN2Q7Z7L9 614 aaPredicted RBP11.79□□□□□ -0.52
CPSF1-201ENST00000526271 LINC00346Q8IVM7 164 aa11.79□□□□□ -0.52
CPSF1-201ENST00000526271 ADGRG5Q8IZF4 528 aa11.79□□□□□ -0.52
CPSF1-201ENST00000526271 OR6V1Q8N148 313 aa11.79□□□□□ -0.52
CPSF1-201ENST00000526271 TMEM86BQ8N661 226 aa11.79□□□□□ -0.52
CPSF1-201ENST00000526271 ZDHHC16Q969W1 377 aa11.79□□□□□ -0.52
CPSF1-201ENST00000526271 DUS3LQ96G46 650 aaKnown RBP11.79□□□□□ -0.52
CPSF1-201ENST00000526271 ZNF582Q96NG8 517 aaPredicted RBP11.79□□□□□ -0.52
CPSF1-201ENST00000526271 COQ7Q99807 217 aa11.79□□□□□ -0.52
CPSF1-201ENST00000526271 FNDC11Q9BVV2 318 aa11.79□□□□□ -0.52
CPSF1-201ENST00000526271 SEMA6AQ9H2E6 1030 aa11.79□□□□□ -0.52
CPSF1-201ENST00000526271 MAGIXQ9H6Y5 334 aa11.79□□□□□ -0.52
CPSF1-201ENST00000526271 IL1RAPQ9NPH3 570 aa11.79□□□□□ -0.52
CPSF1-201ENST00000526271 NOX4Q9NPH5 578 aa11.79□□□□□ -0.52
CPSF1-201ENST00000526271 IER3IP1Q9Y5U9 82 aa11.79□□□□□ -0.52
CPSF1-201ENST00000526271 TRBV4-1A0A0J9YWV2 114 aa11.78□□□□□ -0.52
CPSF1-201ENST00000526271 ZNF879B4DU55 563 aa11.78□□□□□ -0.52
CPSF1-201ENST00000526271 IFNW1P05000 195 aa11.78□□□□□ -0.52
CPSF1-201ENST00000526271 HOXB6P17509 224 aaKnown RBP11.78□□□□□ -0.52
CPSF1-201ENST00000526271 FPR3P25089 353 aa11.78□□□□□ -0.52
CPSF1-201ENST00000526271 GGT2P36268 569 aa11.78□□□□□ -0.52
CPSF1-201ENST00000526271 MAGEA2P43356 314 aa11.78□□□□□ -0.52
CPSF1-201ENST00000526271 RGS6P49758 472 aa11.78□□□□□ -0.52
CPSF1-201ENST00000526271 ACTR3P61158 418 aa11.78□□□□□ -0.52
CPSF1-201ENST00000526271 TAF9Q16594 264 aa11.78□□□□□ -0.52
CPSF1-201ENST00000526271 GPR157Q5UAW9 335 aa11.78□□□□□ -0.52
CPSF1-201ENST00000526271 SLC18B1Q6NT16 456 aa11.78□□□□□ -0.52
CPSF1-201ENST00000526271 ZNF730Q6ZMV8 503 aa11.78□□□□□ -0.52
CPSF1-201ENST00000526271 C17orf107Q6ZR85 190 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms