RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 KLK13Q9UKR3 277 aa13.14□□□□□ -0.31
NUP54-217ENST00000514987 SDK1Q7Z5N4 2213 aa13.14□□□□□ -0.31
NUP54-217ENST00000514987 TMEM235A6NFC5 223 aa13.13□□□□□ -0.31
NUP54-217ENST00000514987 LEUTXA8MZ59 168 aa13.13□□□□□ -0.31
NUP54-217ENST00000514987 GOSR2O14653 212 aa13.13□□□□□ -0.31
NUP54-217ENST00000514987 ZIC3O60481 467 aa13.13□□□□□ -0.31
NUP54-217ENST00000514987 MPC2O95563 127 aa13.13□□□□□ -0.31
NUP54-217ENST00000514987 CCL3P10147 92 aa13.13□□□□□ -0.31
NUP54-217ENST00000514987 CCL4P13236 92 aa13.13□□□□□ -0.31
NUP54-217ENST00000514987 SUCLG1P53597 346 aaKnown RBP13.13□□□□□ -0.31
NUP54-217ENST00000514987 UNC119Q13432 240 aa13.13□□□□□ -0.31
NUP54-217ENST00000514987 SGCAQ16586 387 aa13.13□□□□□ -0.31
NUP54-217ENST00000514987 MOGAT2Q3SYC2 334 aa13.13□□□□□ -0.31
NUP54-217ENST00000514987 TRIM61Q5EBN2 209 aa13.13□□□□□ -0.31
NUP54-217ENST00000514987 RAET1LQ5VY80 246 aa13.13□□□□□ -0.31
NUP54-217ENST00000514987 C11orf88Q6PI97 169 aa13.13□□□□□ -0.31
NUP54-217ENST00000514987 TRAPPC6BQ86SZ2 158 aa13.13□□□□□ -0.31
NUP54-217ENST00000514987 GALNT16Q8N428 558 aa13.13□□□□□ -0.31
NUP54-217ENST00000514987 OR10R2Q8NGX6 335 aa13.13□□□□□ -0.31
NUP54-217ENST00000514987 NKD1Q969G9 470 aa13.13□□□□□ -0.31
NUP54-217ENST00000514987 NKX3-1Q99801 234 aaPredicted RBP13.13□□□□□ -0.31
NUP54-217ENST00000514987 SF3B5Q9BWJ5 86 aaKnown RBP13.13□□□□□ -0.31
NUP54-217ENST00000514987 TINAGL1Q9GZM7 467 aaPredicted RBP13.13□□□□□ -0.31
NUP54-217ENST00000514987 IFT46Q9NQC8 304 aa13.13□□□□□ -0.31
NUP54-217ENST00000514987 COLQQ9Y215 455 aaPredicted RBP13.13□□□□□ -0.31
NUP54-217ENST00000514987 MRPS28Q9Y2Q9 187 aaKnown RBP13.13□□□□□ -0.31
NUP54-217ENST00000514987 A0A0U1RQV5 110 aa13.12□□□□□ -0.31
NUP54-217ENST00000514987 M0QYG6 137 aa13.12□□□□□ -0.31
NUP54-217ENST00000514987 RER1O15258 196 aa13.12□□□□□ -0.31
NUP54-217ENST00000514987 RAMP1O60894 148 aa13.12□□□□□ -0.31
NUP54-217ENST00000514987 CELA2AP08217 269 aa13.12□□□□□ -0.31
NUP54-217ENST00000514987 ZNF35P13682 527 aa13.12□□□□□ -0.31
NUP54-217ENST00000514987 ZNF84P51523 738 aa13.12□□□□□ -0.31
NUP54-217ENST00000514987 H2BFSP57053 126 aa13.12□□□□□ -0.31
NUP54-217ENST00000514987 ZXDAP98168 799 aa13.12□□□□□ -0.31
NUP54-217ENST00000514987 FGL1Q08830 312 aa13.12□□□□□ -0.31
NUP54-217ENST00000514987 ACTBL2Q562R1 376 aa13.12□□□□□ -0.31
NUP54-217ENST00000514987 FAHD2BQ6P2I3 314 aaPredicted RBP13.12□□□□□ -0.31
NUP54-217ENST00000514987 C3P1Q6ZMU1 363 aa13.12□□□□□ -0.31
NUP54-217ENST00000514987 ZNF101Q8IZC7 436 aa13.12□□□□□ -0.31
NUP54-217ENST00000514987 OR5AS1Q8N127 324 aa13.12□□□□□ -0.31
NUP54-217ENST00000514987 OR9K2Q8NGE7 335 aa13.12□□□□□ -0.31
NUP54-217ENST00000514987 OR2I1PQ8NGU4 316 aa13.12□□□□□ -0.31
NUP54-217ENST00000514987 KCNE4Q8WWG9 221 aa13.12□□□□□ -0.31
NUP54-217ENST00000514987 C10orf35Q96D05 121 aa13.12□□□□□ -0.31
NUP54-217ENST00000514987 FAHD2AQ96GK7 314 aa13.12□□□□□ -0.31
NUP54-217ENST00000514987 GAL3ST1Q99999 423 aa13.12□□□□□ -0.31
NUP54-217ENST00000514987 PROK2Q9HC23 129 aa13.12□□□□□ -0.31
NUP54-217ENST00000514987 ZNF160Q9HCG1 818 aa13.12□□□□□ -0.31
NUP54-217ENST00000514987 ZNF24P17028 368 aa13.11□□□□□ -0.31
NUP54-217ENST00000514987 CXCL2P19875 107 aa13.11□□□□□ -0.31
NUP54-217ENST00000514987 ACP1P24666 158 aa13.11□□□□□ -0.31
NUP54-217ENST00000514987 AGTR1P30556 359 aa13.11□□□□□ -0.31
NUP54-217ENST00000514987 S100A11P31949 105 aa13.11□□□□□ -0.31
NUP54-217ENST00000514987 THBS4P35443 961 aa13.11□□□□□ -0.31
NUP54-217ENST00000514987 HIST1H3AP68431 136 aa13.11□□□□□ -0.31
NUP54-217ENST00000514987 CXADRP78310 365 aa13.11□□□□□ -0.31
NUP54-217ENST00000514987 SRSF4Q08170 494 aaKnown RBP13.11□□□□□ -0.31
NUP54-217ENST00000514987 ECH1Q13011 328 aa13.11□□□□□ -0.31
NUP54-217ENST00000514987 CHAF1BQ13112 559 aa13.11□□□□□ -0.31
NUP54-217ENST00000514987 PNLIPRP3Q17RR3 467 aa13.11□□□□□ -0.31
NUP54-217ENST00000514987 DCAF12Q5T6F0 453 aa13.11□□□□□ -0.31
NUP54-217ENST00000514987 ATPAF1Q5TC12 328 aaPredicted RBP13.11□□□□□ -0.31
NUP54-217ENST00000514987 HIST2H3PS2Q5TEC6 136 aa13.11□□□□□ -0.31
NUP54-217ENST00000514987 B3GNTL1Q67FW5 361 aaPredicted RBP13.11□□□□□ -0.31
NUP54-217ENST00000514987 LIN54Q6MZP7 749 aa13.11□□□□□ -0.31
NUP54-217ENST00000514987 HIST2H3AQ71DI3 136 aa13.11□□□□□ -0.31
NUP54-217ENST00000514987 FAM57BQ71RH2 274 aa13.11□□□□□ -0.31
NUP54-217ENST00000514987 C1orf210Q8IVY1 113 aa13.11□□□□□ -0.31
NUP54-217ENST00000514987 TMEM123Q8N131 208 aa13.11□□□□□ -0.31
NUP54-217ENST00000514987 PNLDC1Q8NA58 520 aaKnown RBP13.11□□□□□ -0.31
NUP54-217ENST00000514987 PGAM5Q96HS1 289 aa13.11□□□□□ -0.31
NUP54-217ENST00000514987 GNRHR2Q96P88 292 aa13.11□□□□□ -0.31
NUP54-217ENST00000514987 SLC6A7Q99884 636 aa13.11□□□□□ -0.31
NUP54-217ENST00000514987 ZPBPQ9BS86 351 aa13.11□□□□□ -0.31
NUP54-217ENST00000514987 URM1Q9BTM9 101 aaKnown RBP13.11□□□□□ -0.31
NUP54-217ENST00000514987 ZNF416Q9BWM5 594 aa13.11□□□□□ -0.31
NUP54-217ENST00000514987 GSX2Q9BZM3 304 aa13.11□□□□□ -0.31
NUP54-217ENST00000514987 MYEF2Q9P2K5 600 aaKnown RBP13.11□□□□□ -0.31
NUP54-217ENST00000514987 KIF25Q9UIL4 384 aa13.11□□□□□ -0.31
NUP54-217ENST00000514987 OR14I1A6ND48 311 aa13.11□□□□□ -0.31
NUP54-217ENST00000514987 PATE3B3GLJ2 98 aa13.11□□□□□ -0.31
NUP54-217ENST00000514987 DHHO43323 396 aa13.11□□□□□ -0.31
NUP54-217ENST00000514987 GDF9O60383 454 aa13.11□□□□□ -0.31
NUP54-217ENST00000514987 IGLV3-1P01715 115 aa13.11□□□□□ -0.31
NUP54-217ENST00000514987 P04436 131 aa13.11□□□□□ -0.31
NUP54-217ENST00000514987 HCKP08631 526 aa13.11□□□□□ -0.31
NUP54-217ENST00000514987 SRD5A2P31213 254 aa13.11□□□□□ -0.31
NUP54-217ENST00000514987 CBX5P45973 191 aa13.11□□□□□ -0.31
NUP54-217ENST00000514987 P2RX3P56373 397 aa13.11□□□□□ -0.31
NUP54-217ENST00000514987 GK2Q14410 553 aaPredicted RBP13.11□□□□□ -0.31
NUP54-217ENST00000514987 GLIPR1L1Q6UWM5 242 aa13.11□□□□□ -0.31
NUP54-217ENST00000514987 Q6ZSR3 168 aa13.11□□□□□ -0.31
NUP54-217ENST00000514987 TMED4Q7Z7H5 227 aa13.11□□□□□ -0.31
NUP54-217ENST00000514987 SLC25A42Q86VD7 318 aa13.11□□□□□ -0.31
NUP54-217ENST00000514987 MAML2Q8IZL2 1156 aaPredicted RBP13.11□□□□□ -0.31
NUP54-217ENST00000514987 OR56B1Q8NGI3 324 aa13.11□□□□□ -0.31
NUP54-217ENST00000514987 OR14K1Q8NGZ2 314 aa13.11□□□□□ -0.31
NUP54-217ENST00000514987 PP6455Q8WZ26 134 aa13.11□□□□□ -0.31
NUP54-217ENST00000514987 FAM71F1Q96KD3 344 aaPredicted RBP13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms