RNA–Protein interactions for RNA: ENST00000504203.5

MATR3-233, Transcript of matrin 3, human

TSL 2 BASIC

Gene MATR3, Length 2,243 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MATR3-233	ENST00000504203	CLLU1	Q5K131	121 aa		11.51	□□□□□ -0.57
MATR3-233	ENST00000504203	PHYHD1	Q5SRE7	291 aa		11.51	□□□□□ -0.57
MATR3-233	ENST00000504203	C10orf128	Q5T292	105 aa		11.51	□□□□□ -0.57
MATR3-233	ENST00000504203	ATPAF1	Q5TC12	328 aa	Predicted RBP	11.51	□□□□□ -0.57
MATR3-233	ENST00000504203	FOXL2NB	Q6ZUU3	175 aa		11.51	□□□□□ -0.57
MATR3-233	ENST00000504203	RPS19BP1	Q86WX3	136 aa	Known RBP	11.51	□□□□□ -0.57
MATR3-233	ENST00000504203	ANGPTL5	Q86XS5	388 aa		11.51	□□□□□ -0.57
MATR3-233	ENST00000504203	ZNF584	Q8IVC4	421 aa		11.51	□□□□□ -0.57
MATR3-233	ENST00000504203	BPIFB2	Q8N4F0	458 aa		11.51	□□□□□ -0.57
MATR3-233	ENST00000504203	OR4S1	Q8NGB4	309 aa		11.51	□□□□□ -0.57
MATR3-233	ENST00000504203	TMEM54	Q969K7	222 aa		11.51	□□□□□ -0.57
MATR3-233	ENST00000504203	ZNF416	Q9BWM5	594 aa		11.51	□□□□□ -0.57
MATR3-233	ENST00000504203	UBQLN2	Q9UHD9	624 aa		11.51	□□□□□ -0.57
MATR3-233	ENST00000504203		F5H5P2	479 aa		11.51	□□□□□ -0.57
MATR3-233	ENST00000504203	GOSR2	O14653	212 aa		11.51	□□□□□ -0.57
MATR3-233	ENST00000504203	EIF1B	O60739	113 aa	Known RBP	11.51	□□□□□ -0.57
MATR3-233	ENST00000504203	SCGN	O76038	276 aa		11.51	□□□□□ -0.57
MATR3-233	ENST00000504203	CD63	P08962	238 aa		11.51	□□□□□ -0.57
MATR3-233	ENST00000504203	NR2C1	P13056	603 aa		11.51	□□□□□ -0.57
MATR3-233	ENST00000504203	C4BPB	P20851	252 aa		11.51	□□□□□ -0.57
MATR3-233	ENST00000504203	GRB2	P62993	217 aa	Known RBP	11.51	□□□□□ -0.57
MATR3-233	ENST00000504203	PGAP1	Q75T13	922 aa		11.51	□□□□□ -0.57
MATR3-233	ENST00000504203	SSC4D	Q8WTU2	575 aa		11.51	□□□□□ -0.57
MATR3-233	ENST00000504203	TNFAIP8L1	Q8WVP5	186 aa		11.51	□□□□□ -0.57
MATR3-233	ENST00000504203	ZNF385A	Q96PM9	386 aa	Known RBP	11.51	□□□□□ -0.57
MATR3-233	ENST00000504203	NSG1	A0A0A6YYJ2	146 aa		11.5	□□□□□ -0.57
MATR3-233	ENST00000504203		E9PLN8	166 aa		11.5	□□□□□ -0.57
MATR3-233	ENST00000504203		L7N2F9	121 aa		11.5	□□□□□ -0.57
MATR3-233	ENST00000504203	VAMP5	O95183	116 aa		11.5	□□□□□ -0.57
MATR3-233	ENST00000504203	IGLV3-1	P01715	115 aa		11.5	□□□□□ -0.57
MATR3-233	ENST00000504203	CSNK1A1	P48729	337 aa		11.5	□□□□□ -0.57
MATR3-233	ENST00000504203	SEC61A1	P61619	476 aa	Known RBP	11.5	□□□□□ -0.57
MATR3-233	ENST00000504203	RIPPLY1	Q0D2K3	151 aa		11.5	□□□□□ -0.57
MATR3-233	ENST00000504203	MEF2D	Q14814	521 aa		11.5	□□□□□ -0.57
MATR3-233	ENST00000504203	RAET1L	Q5VY80	246 aa		11.5	□□□□□ -0.57
MATR3-233	ENST00000504203	B3GNTL1	Q67FW5	361 aa	Predicted RBP	11.5	□□□□□ -0.57
MATR3-233	ENST00000504203	AWAT2	Q6E213	333 aa		11.5	□□□□□ -0.57
MATR3-233	ENST00000504203	SLC23A3	Q6PIS1	610 aa		11.5	□□□□□ -0.57
MATR3-233	ENST00000504203	CHMP1B	Q7LBR1	199 aa		11.5	□□□□□ -0.57
MATR3-233	ENST00000504203	TRAPPC6B	Q86SZ2	158 aa		11.5	□□□□□ -0.57
MATR3-233	ENST00000504203	ASB13	Q8WXK3	278 aa		11.5	□□□□□ -0.57
MATR3-233	ENST00000504203	SFXN2	Q96NB2	322 aa		11.5	□□□□□ -0.57
MATR3-233	ENST00000504203	ZNF160	Q9HCG1	818 aa		11.5	□□□□□ -0.57
MATR3-233	ENST00000504203	MAB21L2	Q9Y586	359 aa		11.5	□□□□□ -0.57
MATR3-233	ENST00000504203	COL6A3	P12111	3177 aa		11.5	□□□□□ -0.57
MATR3-233	ENST00000504203		G3V3Y1	287 aa		11.5	□□□□□ -0.57
MATR3-233	ENST00000504203	MASP2	O00187	686 aa		11.5	□□□□□ -0.57
MATR3-233	ENST00000504203	MSR1	P21757	451 aa		11.5	□□□□□ -0.57
MATR3-233	ENST00000504203	ENDOG	Q14249	297 aa	Known RBP	11.5	□□□□□ -0.57
MATR3-233	ENST00000504203	LY6G6F	Q5SQ64	297 aa		11.5	□□□□□ -0.57
MATR3-233	ENST00000504203	ZNF468	Q5VIY5	522 aa	Predicted RBP	11.5	□□□□□ -0.57
MATR3-233	ENST00000504203	FAM57B	Q71RH2	274 aa		11.5	□□□□□ -0.57
MATR3-233	ENST00000504203	DOK3	Q7L591	496 aa		11.5	□□□□□ -0.57
MATR3-233	ENST00000504203	OR2W3	Q7Z3T1	314 aa		11.5	□□□□□ -0.57
MATR3-233	ENST00000504203	COMMD2	Q86X83	199 aa		11.5	□□□□□ -0.57
MATR3-233	ENST00000504203	TMEM123	Q8N131	208 aa		11.5	□□□□□ -0.57
MATR3-233	ENST00000504203	TMEM156	Q8N614	296 aa		11.5	□□□□□ -0.57
MATR3-233	ENST00000504203	GVQW1	Q8N7I0	195 aa		11.5	□□□□□ -0.57
MATR3-233	ENST00000504203	ZNF283	Q8N7M2	679 aa		11.5	□□□□□ -0.57
MATR3-233	ENST00000504203	CHST4	Q8NCG5	386 aa		11.5	□□□□□ -0.57
MATR3-233	ENST00000504203	OR10R2	Q8NGX6	335 aa		11.5	□□□□□ -0.57
MATR3-233	ENST00000504203	OR14K1	Q8NGZ2	314 aa		11.5	□□□□□ -0.57
MATR3-233	ENST00000504203	ANGPTL6	Q8NI99	470 aa		11.5	□□□□□ -0.57
MATR3-233	ENST00000504203	NUDCD2	Q8WVJ2	157 aa		11.5	□□□□□ -0.57
MATR3-233	ENST00000504203	NABP1	Q96AH0	204 aa		11.5	□□□□□ -0.57
MATR3-233	ENST00000504203	MRGPRF	Q96AM1	343 aa		11.5	□□□□□ -0.57
MATR3-233	ENST00000504203	FAM71F1	Q96KD3	344 aa	Predicted RBP	11.5	□□□□□ -0.57
MATR3-233	ENST00000504203	SPACA5	Q96QH8	159 aa		11.5	□□□□□ -0.57
MATR3-233	ENST00000504203	UCN2	Q96RP3	112 aa		11.5	□□□□□ -0.57
MATR3-233	ENST00000504203	LPAR5	Q9H1C0	372 aa		11.5	□□□□□ -0.57
MATR3-233	ENST00000504203	NELFA	Q9H3P2	528 aa		11.5	□□□□□ -0.57
MATR3-233	ENST00000504203	HPF1	Q9NWY4	346 aa		11.5	□□□□□ -0.57
MATR3-233	ENST00000504203	SLC39A1	Q9NY26	324 aa		11.5	□□□□□ -0.57
MATR3-233	ENST00000504203	FARSA	Q9Y285	508 aa	Known RBP	11.5	□□□□□ -0.57
MATR3-233	ENST00000504203	IGHV3-15	A0A0B4J1V0	119 aa		11.49	□□□□□ -0.57
MATR3-233	ENST00000504203	C5orf63	A6NC05	138 aa		11.49	□□□□□ -0.57
MATR3-233	ENST00000504203	DISC1	C4P0D8	188 aa		11.49	□□□□□ -0.57
MATR3-233	ENST00000504203	GNB3	P16520	340 aa		11.49	□□□□□ -0.57
MATR3-233	ENST00000504203	FOLR3	P41439	243 aa		11.49	□□□□□ -0.57
MATR3-233	ENST00000504203	RAC1	P63000	192 aa		11.49	□□□□□ -0.57
MATR3-233	ENST00000504203	HIST1H3A	P68431	136 aa		11.49	□□□□□ -0.57
MATR3-233	ENST00000504203	SGCA	Q16586	387 aa		11.49	□□□□□ -0.57
MATR3-233	ENST00000504203	SLC22A6	Q4U2R8	563 aa		11.49	□□□□□ -0.57
MATR3-233	ENST00000504203	RNASE10	Q5GAN6	216 aa	Known RBP	11.49	□□□□□ -0.57
MATR3-233	ENST00000504203	HIST2H3PS2	Q5TEC6	136 aa		11.49	□□□□□ -0.57
MATR3-233	ENST00000504203	HIST2H3A	Q71DI3	136 aa		11.49	□□□□□ -0.57
MATR3-233	ENST00000504203	TMED4	Q7Z7H5	227 aa		11.49	□□□□□ -0.57
MATR3-233	ENST00000504203	RTN4RL2	Q86UN3	420 aa		11.49	□□□□□ -0.57
MATR3-233	ENST00000504203	C12orf45	Q8N5I9	185 aa	Predicted RBP	11.49	□□□□□ -0.57
MATR3-233	ENST00000504203	DTWD2	Q8NBA8	298 aa		11.49	□□□□□ -0.57
MATR3-233	ENST00000504203	TMEM41A	Q96HV5	264 aa		11.49	□□□□□ -0.57
MATR3-233	ENST00000504203	PRRT1	Q99946	306 aa		11.49	□□□□□ -0.57
MATR3-233	ENST00000504203	NICN1	Q9BSH3	213 aa		11.49	□□□□□ -0.57
MATR3-233	ENST00000504203	SELENOI	Q9C0D9	397 aa		11.49	□□□□□ -0.57
MATR3-233	ENST00000504203	DKKL1	Q9UK85	242 aa		11.49	□□□□□ -0.57
MATR3-233	ENST00000504203	MRPS28	Q9Y2Q9	187 aa	Known RBP	11.49	□□□□□ -0.57
MATR3-233	ENST00000504203	COL27A1	Q8IZC6	1860 aa	Predicted RBP	11.49	□□□□□ -0.57
MATR3-233	ENST00000504203	DMD	P11532	3685 aa		11.49	□□□□□ -0.57
MATR3-233	ENST00000504203		A0A0A6YYD4	124 aa		11.48	□□□□□ -0.57
MATR3-233	ENST00000504203	IGKV1-9	A0A0C4DH69	117 aa		11.48	□□□□□ -0.57

Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms