RNA–Protein interactions for RNA: ENST00000496189.1

SF3A1-209, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 693 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-209ENST00000496189 MSL2Q9HCI7 577 aa13.95□□□□□ -0.18
SF3A1-209ENST00000496189 ZNF275Q9NSD4 429 aaPredicted RBP13.95□□□□□ -0.18
SF3A1-209ENST00000496189 DNAJC27Q9NZQ0 273 aa13.95□□□□□ -0.18
SF3A1-209ENST00000496189 NKX1-2Q9UD57 310 aaPredicted RBP13.95□□□□□ -0.18
SF3A1-209ENST00000496189 NOP16Q9Y3C1 178 aaKnown RBP13.95□□□□□ -0.18
SF3A1-209ENST00000496189 ZSCAN5BA6NJL1 495 aa13.94□□□□□ -0.18
SF3A1-209ENST00000496189 CLDN25C9JDP6 229 aa13.94□□□□□ -0.18
SF3A1-209ENST00000496189 PHYHO14832 338 aa13.94□□□□□ -0.18
SF3A1-209ENST00000496189 CDC14BO60729 498 aa13.94□□□□□ -0.18
SF3A1-209ENST00000496189 MRPL3P09001 348 aaKnown RBP13.94□□□□□ -0.18
SF3A1-209ENST00000496189 H2BFMP0C1H6 154 aa13.94□□□□□ -0.18
SF3A1-209ENST00000496189 COL8A2P25067 703 aa13.94□□□□□ -0.18
SF3A1-209ENST00000496189 PRKXP51817 358 aa13.94□□□□□ -0.18
SF3A1-209ENST00000496189 RIPK1Q13546 671 aa13.94□□□□□ -0.18
SF3A1-209ENST00000496189 RIN1Q13671 783 aa13.94□□□□□ -0.18
SF3A1-209ENST00000496189 HLXQ14774 488 aaPredicted RBP13.94□□□□□ -0.18
SF3A1-209ENST00000496189 OCLNQ16625 522 aa13.94□□□□□ -0.18
SF3A1-209ENST00000496189 KRTAP27-1Q3LI81 207 aa13.94□□□□□ -0.18
SF3A1-209ENST00000496189 OR2T2Q6IF00 324 aa13.94□□□□□ -0.18
SF3A1-209ENST00000496189 COLCA1Q6ZS62 124 aa13.94□□□□□ -0.18
SF3A1-209ENST00000496189 SPATC1Q76KD6 591 aa13.94□□□□□ -0.18
SF3A1-209ENST00000496189 OR5AS1Q8N127 324 aa13.94□□□□□ -0.18
SF3A1-209ENST00000496189 SETD9Q8NE22 299 aa13.94□□□□□ -0.18
SF3A1-209ENST00000496189 OR8G5Q8NG78 346 aa13.94□□□□□ -0.18
SF3A1-209ENST00000496189 OR13G1Q8NGZ3 307 aa13.94□□□□□ -0.18
SF3A1-209ENST00000496189 RNF133Q8WVZ7 376 aa13.94□□□□□ -0.18
SF3A1-209ENST00000496189 SPRYD4Q8WW59 207 aaPredicted RBP13.94□□□□□ -0.18
SF3A1-209ENST00000496189 ASB17Q8WXJ9 295 aa13.94□□□□□ -0.18
SF3A1-209ENST00000496189 POFUT1Q9H488 388 aa13.94□□□□□ -0.18
SF3A1-209ENST00000496189 YAE1D1Q9NRH1 226 aa13.94□□□□□ -0.18
SF3A1-209ENST00000496189 CLN6Q9NWW5 311 aa13.94□□□□□ -0.18
SF3A1-209ENST00000496189 N6AMT1Q9Y5N5 214 aa13.94□□□□□ -0.18
SF3A1-209ENST00000496189 TBX1O43435 398 aa13.93□□□□□ -0.18
SF3A1-209ENST00000496189 XRCC2O43543 280 aa13.93□□□□□ -0.18
SF3A1-209ENST00000496189 RRP9O43818 475 aaKnown RBP13.93□□□□□ -0.18
SF3A1-209ENST00000496189 ANXA2P07355 339 aaKnown RBP13.93□□□□□ -0.18
SF3A1-209ENST00000496189 CD55P08174 381 aa13.93□□□□□ -0.18
SF3A1-209ENST00000496189 ALOX5APP20292 161 aa13.93□□□□□ -0.18
SF3A1-209ENST00000496189 CDK5R2Q13319 367 aa13.93□□□□□ -0.18
SF3A1-209ENST00000496189 IL18R1Q13478 541 aa13.93□□□□□ -0.18
SF3A1-209ENST00000496189 KRT77Q7Z794 578 aa13.93□□□□□ -0.18
SF3A1-209ENST00000496189 OR10S1Q8NGN2 331 aa13.93□□□□□ -0.18
SF3A1-209ENST00000496189 GTF3AQ92664 365 aaKnown RBP13.93□□□□□ -0.18
SF3A1-209ENST00000496189 HPS1Q92902 700 aa13.93□□□□□ -0.18
SF3A1-209ENST00000496189 RAB1CQ92928 201 aa13.93□□□□□ -0.18
SF3A1-209ENST00000496189 UBE2FQ969M7 185 aa13.93□□□□□ -0.18
SF3A1-209ENST00000496189 NIPAL2Q9H841 368 aa13.93□□□□□ -0.18
SF3A1-209ENST00000496189 IL19Q9UHD0 177 aa13.93□□□□□ -0.18
SF3A1-209ENST00000496189 MTORP42345 2549 aa13.92□□□□□ -0.18
SF3A1-209ENST00000496189 A0A096LNT2 108 aa13.92□□□□□ -0.18
SF3A1-209ENST00000496189 IGHV4-61A0A0C4DH41 118 aa13.92□□□□□ -0.18
SF3A1-209ENST00000496189 GGT3PA6NGU5 568 aa13.92□□□□□ -0.18
SF3A1-209ENST00000496189 A8MV72 311 aaPredicted RBP13.92□□□□□ -0.18
SF3A1-209ENST00000496189 ZNF670-ZNF695F2Z2N8 137 aa13.92□□□□□ -0.18
SF3A1-209ENST00000496189 H0YAE9 185 aa13.92□□□□□ -0.18
SF3A1-209ENST00000496189 ENTPD6O75354 484 aa13.92□□□□□ -0.18
SF3A1-209ENST00000496189 TACSTD2P09758 323 aa13.92□□□□□ -0.18
SF3A1-209ENST00000496189 SBK2P0C263 348 aa13.92□□□□□ -0.18
SF3A1-209ENST00000496189 PSKH1P11801 424 aa13.92□□□□□ -0.18
SF3A1-209ENST00000496189 OTX1P32242 354 aaPredicted RBP13.92□□□□□ -0.18
SF3A1-209ENST00000496189 MTNR1AP48039 350 aa13.92□□□□□ -0.18
SF3A1-209ENST00000496189 CX3CR1P49238 355 aa13.92□□□□□ -0.18
SF3A1-209ENST00000496189 SRP9P49458 86 aaKnown RBP13.92□□□□□ -0.18
SF3A1-209ENST00000496189 IL5RAQ01344 420 aa13.92□□□□□ -0.18
SF3A1-209ENST00000496189 GK2Q14410 553 aaPredicted RBP13.92□□□□□ -0.18
SF3A1-209ENST00000496189 RSPO1Q2MKA7 263 aaPredicted RBP13.92□□□□□ -0.18
SF3A1-209ENST00000496189 DEGS2Q6QHC5 323 aa13.92□□□□□ -0.18
SF3A1-209ENST00000496189 SLC35F2Q8IXU6 374 aa13.92□□□□□ -0.18
SF3A1-209ENST00000496189 ENTHD1Q8IYW4 607 aa13.92□□□□□ -0.18
SF3A1-209ENST00000496189 BHLHE23Q8NDY6 225 aa13.92□□□□□ -0.18
SF3A1-209ENST00000496189 OR51G2Q8NGK0 314 aa13.92□□□□□ -0.18
SF3A1-209ENST00000496189 RHOXF1Q8NHV9 184 aa13.92□□□□□ -0.18
SF3A1-209ENST00000496189 CCL17Q92583 94 aa13.92□□□□□ -0.18
SF3A1-209ENST00000496189 YIPF5Q969M3 257 aa13.92□□□□□ -0.18
SF3A1-209ENST00000496189 MROQ9BYG7 248 aa13.92□□□□□ -0.18
SF3A1-209ENST00000496189 SLC22A4Q9H015 551 aa13.92□□□□□ -0.18
SF3A1-209ENST00000496189 ADGRL4Q9HBW9 690 aa13.92□□□□□ -0.18
SF3A1-209ENST00000496189 TMEM100Q9NV29 134 aa13.92□□□□□ -0.18
SF3A1-209ENST00000496189 PCDHGB1Q9Y5G3 927 aa13.92□□□□□ -0.18
SF3A1-209ENST00000496189 RTTNQ86VV8 2226 aa13.92□□□□□ -0.18
SF3A1-209ENST00000496189 LOC100289279A0A1B0GTE1 492 aa13.91□□□□□ -0.18
SF3A1-209ENST00000496189 IQCF6A8MYZ5 107 aa13.91□□□□□ -0.18
SF3A1-209ENST00000496189 H0YJX3 145 aa13.91□□□□□ -0.18
SF3A1-209ENST00000496189 DLGAP1O14490 977 aa13.91□□□□□ -0.18
SF3A1-209ENST00000496189 ZNF254O75437 659 aa13.91□□□□□ -0.18
SF3A1-209ENST00000496189 OR2T7P0C7T2 308 aa13.91□□□□□ -0.18
SF3A1-209ENST00000496189 CFL1P23528 166 aaKnown RBP13.91□□□□□ -0.18
SF3A1-209ENST00000496189 OPRL1P41146 370 aa13.91□□□□□ -0.18
SF3A1-209ENST00000496189 TIGD6Q17RP2 521 aa13.91□□□□□ -0.18
SF3A1-209ENST00000496189 ZNF691Q5VV52 312 aa13.91□□□□□ -0.18
SF3A1-209ENST00000496189 FAM166AQ6J272 317 aa13.91□□□□□ -0.18
SF3A1-209ENST00000496189 NAA40Q86UY6 237 aa13.91□□□□□ -0.18
SF3A1-209ENST00000496189 OR52H1Q8NGJ2 320 aa13.91□□□□□ -0.18
SF3A1-209ENST00000496189 OR2T27Q8NH04 317 aa13.91□□□□□ -0.18
SF3A1-209ENST00000496189 MYCBPQ99417 103 aaPredicted RBP13.91□□□□□ -0.18
SF3A1-209ENST00000496189 ADI1Q9BV57 179 aa13.91□□□□□ -0.18
SF3A1-209ENST00000496189 PPP1R3CQ9UQK1 317 aa13.91□□□□□ -0.18
SF3A1-209ENST00000496189 CR1P17927 2039 aa13.91□□□□□ -0.18
SF3A1-209ENST00000496189 INAFM1C9JVW0 142 aa13.9□□□□□ -0.18
SF3A1-209ENST00000496189 IFNL4K9M1U5 179 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms