RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 ZNF136P52737 540 aa9.67□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 HMGA2P52926 109 aa9.67□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 BIDP55957 195 aa9.67□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 UBE2KP61086 200 aa9.67□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 NIPAL3Q6P499 406 aa9.67□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 MCEMP1Q8IX19 187 aa9.67□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 ZNF679Q8IYX0 411 aa9.67□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 C17orf47Q8NEP4 570 aa9.67□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 MS4A3Q96HJ5 214 aa9.67□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 SIGLEC11Q96RL6 698 aa9.67□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 WDR76Q9H967 626 aa9.67□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 WASF3Q9UPY6 502 aa9.67□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 SIGLEC7Q9Y286 467 aa9.67□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 HIF3AQ9Y2N7 669 aa9.67□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 COA3Q9Y2R0 106 aaPredicted RBP9.67□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 NPIPA2E9PIF3 369 aa9.67□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 NPIPA3F8WFD2 350 aa9.67□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 MPZL1O95297 269 aa9.67□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 IL33O95760 270 aa9.67□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 GP1BAP07359 652 aa9.67□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 ANKRD34CP0C6C1 535 aa9.67□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 PAX6P26367 422 aa9.67□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 LAP3P28838 519 aa9.67□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 FOLR3P41439 243 aa9.67□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 PPICP45877 212 aa9.67□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 DUSP3P51452 185 aaPredicted RBP9.67□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 TAS2R20P59543 309 aa9.67□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 PRPS1P60891 318 aa9.67□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 ACKR1Q16570 336 aa9.67□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 ZNF660Q6AZW8 331 aaPredicted RBP9.67□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 TMEM91Q6ZNR0 172 aa9.67□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 SLC38A9Q8NBW4 561 aa9.67□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 OR1S1Q8NH92 325 aa9.67□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 PNPLA2Q96AD5 504 aa9.67□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 RHOVQ96L33 236 aa9.67□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 VSTM2LQ96N03 204 aa9.67□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 LSM2Q9Y333 95 aaKnown RBP9.67□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 DENND4CQ5VZ89 1909 aa9.67□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 NDUFB6O95139 128 aa9.67□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 RECKO95980 971 aa9.67□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 THBS1P07996 1170 aa9.67□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 SFTA3P0C7M3 94 aa9.67□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 PNMTP11086 282 aa9.67□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 HOXB9P17482 250 aaPredicted RBP9.67□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 SRMP19623 302 aa9.67□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 ZNF626Q68DY1 528 aa9.67□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 MUC20Q8N307 709 aaPredicted RBP9.67□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 PTPMT1Q8WUK0 201 aaPredicted RBP9.67□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 PPP1R14AQ96A00 147 aa9.67□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 TMEM106AQ96A25 262 aa9.67□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 CDC6Q99741 560 aa9.67□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 ARHGDIGQ99819 225 aa9.67□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 WWTR1Q9GZV5 400 aa9.67□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 UQCC1Q9NVA1 299 aa9.67□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 MED9Q9NWA0 146 aa9.67□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 SLC22A13Q9Y226 551 aa9.67□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 SPTBN5Q9NRC6 3674 aaKnown RBP9.66□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 A0A087WV62 115 aa9.66□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 PLSCR5A0PG75 271 aa9.66□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 LILRA5A6NI73 299 aa9.66□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 RNASEK-C17orf49H0YIS7 233 aa9.66□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 CD14P08571 375 aa9.66□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 HCKP08631 526 aa9.66□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 OR13C7P0DN81 318 aa9.66□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 PJVKQ0ZLH3 352 aa9.66□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 MLC1Q15049 377 aa9.66□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 LIPNQ5VXI9 398 aa9.66□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 ZNF705AQ6ZN79 300 aaPredicted RBP9.66□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 PLPP7Q8NBV4 271 aa9.66□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 POM121Q96HA1 1249 aa9.66□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 KCNJ15Q99712 375 aa9.66□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 KCNG2Q9UJ96 466 aa9.66□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 THADAQ6YHU6 1953 aa9.66□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 ZNF587BE7ETH6 402 aa9.66□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 EIF1BO60739 113 aaKnown RBP9.66□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 GAAP10253 952 aa9.66□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 S1PR1P21453 382 aa9.66□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 EPHA8P29322 1005 aaPredicted RBP9.66□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 EIF1P41567 113 aaKnown RBP9.66□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 FOXK1P85037 733 aa9.66□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 KIF26BQ2KJY2 2108 aa9.66□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 PLEKHN1Q494U1 663 aaPredicted RBP9.66□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 RPL22L1Q6P5R6 122 aaKnown RBP9.66□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 MDGA2Q7Z553 956 aa9.66□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 C1orf210Q8IVY1 113 aa9.66□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 CADM4Q8NFZ8 388 aa9.66□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 NEK7Q8TDX7 302 aa9.66□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 HSD17B8Q92506 261 aa9.66□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 TAAR8Q969N4 342 aa9.66□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 RSPO3Q9BXY4 272 aaPredicted RBP9.66□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 HEXA-AS1Q9H8Q6 139 aa9.66□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 DIDO1Q9BTC0 2240 aaKnown RBP9.66□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 MPDZO75970 2070 aa9.66□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 ABCA4P78363 2273 aa9.66□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 TMEM235A6NFC5 223 aa9.66□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 GPRIN2O60269 458 aa9.66□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 P04436 131 aa9.66□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 CPN1P15169 458 aa9.66□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 RAP1AP62834 184 aa9.66□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 C1orf140Q5VVS0 124 aa9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms