RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 OR5AS1Q8N127 324 aa18.58■□□□□ 0.57
CCDC88B-208ENST00000492980 PAQR4Q8N4S7 273 aaPredicted RBP18.58■□□□□ 0.57
CCDC88B-208ENST00000492980 OR2V1Q8NHB1 315 aa18.58■□□□□ 0.57
CCDC88B-208ENST00000492980 ZNF837Q96EG3 531 aaPredicted RBP18.58■□□□□ 0.57
CCDC88B-208ENST00000492980 SCPEP1Q9HB40 452 aa18.58■□□□□ 0.57
CCDC88B-208ENST00000492980 SLC5A6Q9Y289 635 aa18.58■□□□□ 0.57
CCDC88B-208ENST00000492980 C5orf63A6NC05 138 aa18.58■□□□□ 0.56
CCDC88B-208ENST00000492980 ERCC1P07992 297 aaPredicted RBP18.58■□□□□ 0.56
CCDC88B-208ENST00000492980 ZNF84P51523 738 aa18.58■□□□□ 0.56
CCDC88B-208ENST00000492980 ACTBP60709 375 aa18.58■□□□□ 0.56
CCDC88B-208ENST00000492980 ZP1P60852 638 aa18.58■□□□□ 0.56
CCDC88B-208ENST00000492980 ACTG1P63261 375 aa18.58■□□□□ 0.56
CCDC88B-208ENST00000492980 GLDNQ6ZMI3 551 aaPredicted RBP18.58■□□□□ 0.56
CCDC88B-208ENST00000492980 ZNF782Q6ZMW2 699 aaPredicted RBP18.58■□□□□ 0.56
CCDC88B-208ENST00000492980 SLC7A5P1Q8MH63 180 aa18.58■□□□□ 0.56
CCDC88B-208ENST00000492980 OR10D3Q8NH80 312 aa18.58■□□□□ 0.56
CCDC88B-208ENST00000492980 ADAMTS17Q8TE56 1095 aa18.58■□□□□ 0.56
CCDC88B-208ENST00000492980 TMEM9BQ9NQ34 198 aa18.58■□□□□ 0.56
CCDC88B-208ENST00000492980 NEURL1O76050 574 aa18.57■□□□□ 0.56
CCDC88B-208ENST00000492980 IGLV3-1P01715 115 aa18.57■□□□□ 0.56
CCDC88B-208ENST00000492980 FCER2P06734 321 aa18.57■□□□□ 0.56
CCDC88B-208ENST00000492980 ANXA7P20073 488 aaKnown RBP18.57■□□□□ 0.56
CCDC88B-208ENST00000492980 POU3F2P20265 443 aaPredicted RBP18.57■□□□□ 0.56
CCDC88B-208ENST00000492980 NTF4P34130 210 aa18.57■□□□□ 0.56
CCDC88B-208ENST00000492980 CLDN15P56746 228 aa18.57■□□□□ 0.56
CCDC88B-208ENST00000492980 MRPS34P82930 218 aaKnown RBP18.57■□□□□ 0.56
CCDC88B-208ENST00000492980 GFOD2Q3B7J2 385 aa18.57■□□□□ 0.56
CCDC88B-208ENST00000492980 HES3Q5TGS1 186 aa18.57■□□□□ 0.56
CCDC88B-208ENST00000492980 ABLIM2Q6H8Q1 611 aa18.57■□□□□ 0.56
CCDC88B-208ENST00000492980 SEZ6L2Q6UXD5 910 aa18.57■□□□□ 0.56
CCDC88B-208ENST00000492980 PGAP1Q75T13 922 aa18.57■□□□□ 0.56
CCDC88B-208ENST00000492980 NAA40Q86UY6 237 aa18.57■□□□□ 0.56
CCDC88B-208ENST00000492980 ACBD4Q8NC06 268 aa18.57■□□□□ 0.56
CCDC88B-208ENST00000492980 ROBO4Q8WZ75 1007 aa18.57■□□□□ 0.56
CCDC88B-208ENST00000492980 PGAM5Q96HS1 289 aa18.57■□□□□ 0.56
CCDC88B-208ENST00000492980 SEC22CQ9BRL7 303 aa18.57■□□□□ 0.56
CCDC88B-208ENST00000492980 B3GNT4Q9C0J1 378 aa18.57■□□□□ 0.56
CCDC88B-208ENST00000492980 ING4Q9UNL4 249 aa18.57■□□□□ 0.56
CCDC88B-208ENST00000492980 CD3DP04234 171 aa18.56■□□□□ 0.56
CCDC88B-208ENST00000492980 VSIG8P0DPA2 414 aa18.56■□□□□ 0.56
CCDC88B-208ENST00000492980 ZNF93P35789 620 aaPredicted RBP18.56■□□□□ 0.56
CCDC88B-208ENST00000492980 GFRA1P56159 465 aa18.56■□□□□ 0.56
CCDC88B-208ENST00000492980 RBMS2Q15434 407 aaKnown RBP18.56■□□□□ 0.56
CCDC88B-208ENST00000492980 NDUFA5Q16718 116 aa18.56■□□□□ 0.56
CCDC88B-208ENST00000492980 HYAL4Q2M3T9 481 aa18.56■□□□□ 0.56
CCDC88B-208ENST00000492980 RNF144BQ7Z419 303 aa18.56■□□□□ 0.56
CCDC88B-208ENST00000492980 OR14K1Q8NGZ2 314 aa18.56■□□□□ 0.56
CCDC88B-208ENST00000492980 ELF5Q9UKW6 265 aaPredicted RBP18.56■□□□□ 0.56
CCDC88B-208ENST00000492980 BOKQ9UMX3 212 aaPredicted RBP18.56■□□□□ 0.56
CCDC88B-208ENST00000492980 METTL21EPA6NDL7 271 aa18.56■□□□□ 0.56
CCDC88B-208ENST00000492980 WIPF3A6NGB9 483 aa18.56■□□□□ 0.56
CCDC88B-208ENST00000492980 PYCARD-AS1I3L0S3 204 aa18.56■□□□□ 0.56
CCDC88B-208ENST00000492980 IL5P05113 134 aa18.56■□□□□ 0.56
CCDC88B-208ENST00000492980 RSPO1Q2MKA7 263 aaPredicted RBP18.56■□□□□ 0.56
CCDC88B-208ENST00000492980 ABHD17BQ5VST6 288 aa18.56■□□□□ 0.56
CCDC88B-208ENST00000492980 FAM27BQ5VT28 67 aa18.56■□□□□ 0.56
CCDC88B-208ENST00000492980 STEAP1BQ6NZ63 245 aa18.56■□□□□ 0.56
CCDC88B-208ENST00000492980 GABRG1Q8N1C3 465 aa18.56■□□□□ 0.56
CCDC88B-208ENST00000492980 DVL3Q92997 716 aaPredicted RBP18.56■□□□□ 0.56
CCDC88B-208ENST00000492980 NKD1Q969G9 470 aa18.56■□□□□ 0.56
CCDC88B-208ENST00000492980 FBXO17Q96EF6 278 aa18.56■□□□□ 0.56
CCDC88B-208ENST00000492980 MED30Q96HR3 178 aa18.56■□□□□ 0.56
CCDC88B-208ENST00000492980 LYZL4Q96KX0 146 aa18.56■□□□□ 0.56
CCDC88B-208ENST00000492980 SIGLEC12Q96PQ1 595 aa18.56■□□□□ 0.56
CCDC88B-208ENST00000492980 GINS4Q9BRT9 223 aa18.56■□□□□ 0.56
CCDC88B-208ENST00000492980 ZMAT3Q9HA38 289 aaKnown RBP18.56■□□□□ 0.56
CCDC88B-208ENST00000492980 F5H5K5 113 aa18.55■□□□□ 0.56
CCDC88B-208ENST00000492980 RAB27BO00194 218 aa18.55■□□□□ 0.56
CCDC88B-208ENST00000492980 TNFRSF10AO00220 468 aa18.55■□□□□ 0.56
CCDC88B-208ENST00000492980 OTX1P32242 354 aaPredicted RBP18.55■□□□□ 0.56
CCDC88B-208ENST00000492980 RAB12Q6IQ22 244 aa18.55■□□□□ 0.56
CCDC88B-208ENST00000492980 C9orf62Q8N4C0 152 aa18.55■□□□□ 0.56
CCDC88B-208ENST00000492980 TMEM229BQ8NBD8 167 aa18.55■□□□□ 0.56
CCDC88B-208ENST00000492980 OR8S1Q8NH09 359 aa18.55■□□□□ 0.56
CCDC88B-208ENST00000492980 AQP3Q92482 292 aa18.55■□□□□ 0.56
CCDC88B-208ENST00000492980 FAM46BQ96A09 425 aa18.55■□□□□ 0.56
CCDC88B-208ENST00000492980 NPDC1Q9NQX5 325 aaPredicted RBP18.55■□□□□ 0.56
CCDC88B-208ENST00000492980 FBLN5Q9UBX5 448 aa18.55■□□□□ 0.56
CCDC88B-208ENST00000492980 PCDHGA1Q9Y5H4 931 aa18.55■□□□□ 0.56
CCDC88B-208ENST00000492980 NPTNQ9Y639 398 aa18.55■□□□□ 0.56
CCDC88B-208ENST00000492980 KMT2EQ8IZD2 1858 aa18.55■□□□□ 0.56
CCDC88B-208ENST00000492980 TMEM235A6NFC5 223 aa18.55■□□□□ 0.56
CCDC88B-208ENST00000492980 AKR7A2O43488 359 aa18.55■□□□□ 0.56
CCDC88B-208ENST00000492980 TAS2R19P59542 299 aa18.55■□□□□ 0.56
CCDC88B-208ENST00000492980 CSRP2Q16527 193 aa18.55■□□□□ 0.56
CCDC88B-208ENST00000492980 DCAF10Q5QP82 559 aa18.55■□□□□ 0.56
CCDC88B-208ENST00000492980 AWAT2Q6E213 333 aa18.55■□□□□ 0.56
CCDC88B-208ENST00000492980 ANGPTL5Q86XS5 388 aa18.55■□□□□ 0.56
CCDC88B-208ENST00000492980 OR2M7Q8NG81 312 aa18.55■□□□□ 0.56
CCDC88B-208ENST00000492980 OR51S1Q8NGJ8 323 aa18.55■□□□□ 0.56
CCDC88B-208ENST00000492980 SPACA5Q96QH8 159 aa18.55■□□□□ 0.56
CCDC88B-208ENST00000492980 FAM173AQ9BQD7 235 aa18.55■□□□□ 0.56
CCDC88B-208ENST00000492980 GON7Q9BXV9 100 aa18.55■□□□□ 0.56
CCDC88B-208ENST00000492980 SLCO5A1Q9H2Y9 848 aa18.55■□□□□ 0.56
CCDC88B-208ENST00000492980 RANBP3Q9H6Z4 567 aaPredicted RBP18.55■□□□□ 0.56
CCDC88B-208ENST00000492980 TNFSF15O95150 251 aa18.54■□□□□ 0.56
CCDC88B-208ENST00000492980 ZNF260Q3ZCT1 412 aa18.54■□□□□ 0.56
CCDC88B-208ENST00000492980 DLL4Q9NR61 685 aa18.54■□□□□ 0.56
CCDC88B-208ENST00000492980 HSPB11Q9Y547 144 aa18.54■□□□□ 0.56
CCDC88B-208ENST00000492980 CNTRLQ7Z7A1 2325 aa18.53■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms