RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 TSSC4Q9Y5U2 329 aaPredicted RBP1.3□□□□□ -2.2
CPSF3-205ENST00000489629 UBIAD1Q9Y5Z9 338 aa1.3□□□□□ -2.2
CPSF3-205ENST00000489629 RFNGQ9Y644 331 aa1.3□□□□□ -2.2
CPSF3-205ENST00000489629 TMEM131Q92545 1883 aa1.3□□□□□ -2.2
CPSF3-205ENST00000489629 BAZ2AQ9UIF9 1905 aaKnown RBP1.3□□□□□ -2.2
CPSF3-205ENST00000489629 PTPRTO14522 1441 aa1.3□□□□□ -2.2
CPSF3-205ENST00000489629 TNS2Q63HR2 1409 aa1.3□□□□□ -2.2
CPSF3-205ENST00000489629 IGKV1-8A0A0C4DH67 115 aa1.29□□□□□ -2.2
CPSF3-205ENST00000489629 LOC100653049A0A140TA62 436 aa1.29□□□□□ -2.2
CPSF3-205ENST00000489629 OR6C74A6NCV1 312 aa1.29□□□□□ -2.2
CPSF3-205ENST00000489629 H0YC42 278 aa1.29□□□□□ -2.2
CPSF3-205ENST00000489629 DNASE2O00115 360 aaPredicted RBP1.29□□□□□ -2.2
CPSF3-205ENST00000489629 NME4O00746 187 aa1.29□□□□□ -2.2
CPSF3-205ENST00000489629 PLPP1O14494 284 aa1.29□□□□□ -2.2
CPSF3-205ENST00000489629 BPY2O14599 106 aa1.29□□□□□ -2.2
CPSF3-205ENST00000489629 NVLO15381 856 aaKnown RBP1.29□□□□□ -2.2
CPSF3-205ENST00000489629 SOCS1O15524 211 aa1.29□□□□□ -2.2
CPSF3-205ENST00000489629 RBFOX2O43251 390 aaKnown RBP eCLIP1.29□□□□□ -2.2
CPSF3-205ENST00000489629 ERI3O43414 337 aaKnown RBP1.29□□□□□ -2.2
CPSF3-205ENST00000489629 RDH16O75452 317 aa1.29□□□□□ -2.2
CPSF3-205ENST00000489629 KRT34O76011 436 aa1.29□□□□□ -2.2
CPSF3-205ENST00000489629 VAMP5O95183 116 aa1.29□□□□□ -2.2
CPSF3-205ENST00000489629 TDP2O95551 362 aa1.29□□□□□ -2.2
CPSF3-205ENST00000489629 HBE1P02100 147 aa1.29□□□□□ -2.2
CPSF3-205ENST00000489629 CRYGCP07315 174 aa1.29□□□□□ -2.2
CPSF3-205ENST00000489629 KRT16P08779 473 aa1.29□□□□□ -2.2
CPSF3-205ENST00000489629 ADRA2AP08913 450 aa1.29□□□□□ -2.2
CPSF3-205ENST00000489629 LINC00869P0C866 280 aa1.29□□□□□ -2.2
CPSF3-205ENST00000489629 PGA4P0DJD7 388 aa1.29□□□□□ -2.2
CPSF3-205ENST00000489629 PGA3P0DJD8 388 aa1.29□□□□□ -2.2
CPSF3-205ENST00000489629 RAB4AP20338 218 aa1.29□□□□□ -2.2
CPSF3-205ENST00000489629 USF1P22415 310 aaPredicted RBP1.29□□□□□ -2.2
CPSF3-205ENST00000489629 DTYMKP23919 212 aa1.29□□□□□ -2.2
CPSF3-205ENST00000489629 HCAR3P49019 387 aa1.29□□□□□ -2.2
CPSF3-205ENST00000489629 SYNJ2BPP57105 145 aa1.29□□□□□ -2.2
CPSF3-205ENST00000489629 VSX2P58304 361 aaPredicted RBP1.29□□□□□ -2.2
CPSF3-205ENST00000489629 CACNG7P62955 275 aa1.29□□□□□ -2.2
CPSF3-205ENST00000489629 XIAPP98170 497 aa1.29□□□□□ -2.2
CPSF3-205ENST00000489629 RAD51Q06609 339 aa1.29□□□□□ -2.2
CPSF3-205ENST00000489629 ZNF266Q14584 549 aa1.29□□□□□ -2.2
CPSF3-205ENST00000489629 PRSS8Q16651 343 aa1.29□□□□□ -2.2
CPSF3-205ENST00000489629 FBXW9Q5XUX1 488 aa1.29□□□□□ -2.2
CPSF3-205ENST00000489629 STUMQ69YW2 141 aa1.29□□□□□ -2.2
CPSF3-205ENST00000489629 ADNP2Q6IQ32 1131 aa1.29□□□□□ -2.2
CPSF3-205ENST00000489629 LINC00336Q6ZUF6 198 aa1.29□□□□□ -2.2
CPSF3-205ENST00000489629 MBOAT2Q6ZWT7 520 aa1.29□□□□□ -2.2
CPSF3-205ENST00000489629 CALHM3Q86XJ0 350 aa1.29□□□□□ -2.2
CPSF3-205ENST00000489629 APRG1Q8IVJ8 170 aa1.29□□□□□ -2.2
CPSF3-205ENST00000489629 MICU2Q8IYU8 434 aa1.29□□□□□ -2.2
CPSF3-205ENST00000489629 LGI3Q8N145 548 aa1.29□□□□□ -2.2
CPSF3-205ENST00000489629 JAGN1Q8N5M9 183 aa1.29□□□□□ -2.2
CPSF3-205ENST00000489629 TRAM1L1Q8N609 369 aa1.29□□□□□ -2.2
CPSF3-205ENST00000489629 CHST4Q8NCG5 386 aa1.29□□□□□ -2.2
CPSF3-205ENST00000489629 GPR26Q8NDV2 337 aa1.29□□□□□ -2.2
CPSF3-205ENST00000489629 OR6N1Q8NGY5 312 aa1.29□□□□□ -2.2
CPSF3-205ENST00000489629 OR8U1Q8NH10 309 aa1.29□□□□□ -2.2
CPSF3-205ENST00000489629 COQ8AQ8NI60 647 aa1.29□□□□□ -2.2
CPSF3-205ENST00000489629 SYNPRQ8TBG9 265 aa1.29□□□□□ -2.2
CPSF3-205ENST00000489629 OR51E1Q8TCB6 317 aa1.29□□□□□ -2.2
CPSF3-205ENST00000489629 APH1BQ8WW43 257 aa1.29□□□□□ -2.2
CPSF3-205ENST00000489629 CACNG8Q8WXS5 425 aa1.29□□□□□ -2.2
CPSF3-205ENST00000489629 ESR2Q92731 530 aa1.29□□□□□ -2.2
CPSF3-205ENST00000489629 RPEQ96AT9 228 aa1.29□□□□□ -2.2
CPSF3-205ENST00000489629 NARS2Q96I59 477 aaKnown RBP1.29□□□□□ -2.2
CPSF3-205ENST00000489629 RNF145Q96MT1 663 aa1.29□□□□□ -2.2
CPSF3-205ENST00000489629 ZNF382Q96SR6 550 aa1.29□□□□□ -2.2
CPSF3-205ENST00000489629 TIMM17AQ99595 171 aa1.29□□□□□ -2.2
CPSF3-205ENST00000489629 FOXC2Q99958 501 aa1.29□□□□□ -2.2
CPSF3-205ENST00000489629 CHID1Q9BWS9 393 aa1.29□□□□□ -2.2
CPSF3-205ENST00000489629 ZYG11BQ9C0D3 744 aa1.29□□□□□ -2.2
CPSF3-205ENST00000489629 CHRNA10Q9GZZ6 450 aa1.29□□□□□ -2.2
CPSF3-205ENST00000489629 BLZF1Q9H2G9 400 aa1.29□□□□□ -2.2
CPSF3-205ENST00000489629 PIGUQ9H490 435 aa1.29□□□□□ -2.2
CPSF3-205ENST00000489629 DDX19AQ9NUU7 478 aaKnown RBP1.29□□□□□ -2.2
CPSF3-205ENST00000489629 CLN6Q9NWW5 311 aa1.29□□□□□ -2.2
CPSF3-205ENST00000489629 TRMT112Q9UI30 125 aaKnown RBP1.29□□□□□ -2.2
CPSF3-205ENST00000489629 MROH7Q68CQ1 1323 aa1.29□□□□□ -2.2
CPSF3-205ENST00000489629 PCDH11XQ9BZA7 1347 aa1.29□□□□□ -2.2
CPSF3-205ENST00000489629 PALLDQ8WX93 1383 aa1.29□□□□□ -2.2
CPSF3-205ENST00000489629 PLEKHG2Q9H7P9 1386 aa1.29□□□□□ -2.2
CPSF3-205ENST00000489629 KIF27Q86VH2 1401 aa1.29□□□□□ -2.2
CPSF3-205ENST00000489629 AHDC1Q5TGY3 1603 aaPredicted RBP1.29□□□□□ -2.2
CPSF3-205ENST00000489629 TRIP11Q15643 1979 aa1.28□□□□□ -2.2
CPSF3-205ENST00000489629 IGHV1OR15-9A0A0B4J2B8 117 aa1.28□□□□□ -2.2
CPSF3-205ENST00000489629 A0A0J9YXV3 536 aa1.28□□□□□ -2.2
CPSF3-205ENST00000489629 A6NDN8 102 aa1.28□□□□□ -2.2
CPSF3-205ENST00000489629 H7C0C1 242 aa1.28□□□□□ -2.2
CPSF3-205ENST00000489629 FGFR1OPO95684 399 aaKnown RBP1.28□□□□□ -2.2
CPSF3-205ENST00000489629 LSM8O95777 96 aaKnown RBP1.28□□□□□ -2.2
CPSF3-205ENST00000489629 TGM6O95932 706 aa1.28□□□□□ -2.2
CPSF3-205ENST00000489629 APCSP02743 223 aa1.28□□□□□ -2.2
CPSF3-205ENST00000489629 OR56A5P0C7T3 313 aa1.28□□□□□ -2.2
CPSF3-205ENST00000489629 PGA5P0DJD9 388 aa1.28□□□□□ -2.2
CPSF3-205ENST00000489629 ERGP11308 486 aa1.28□□□□□ -2.2
CPSF3-205ENST00000489629 GABRR2P28476 465 aa1.28□□□□□ -2.2
CPSF3-205ENST00000489629 RAB7AP51149 207 aa1.28□□□□□ -2.2
CPSF3-205ENST00000489629 FABP6P51161 128 aa1.28□□□□□ -2.2
CPSF3-205ENST00000489629 NDUFA8P51970 172 aa1.28□□□□□ -2.2
CPSF3-205ENST00000489629 ATP5J2P56134 94 aa1.28□□□□□ -2.2
CPSF3-205ENST00000489629 CLDN18P56856 261 aa1.28□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms