RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 SDHAF2Q9NX18 166 aa4.37□□□□□ -1.71
USP40-213ENST00000483216 MS4A12Q9NXJ0 267 aa4.37□□□□□ -1.71
USP40-213ENST00000483216 CD274Q9NZQ7 290 aa4.37□□□□□ -1.71
USP40-213ENST00000483216 EXTL2Q9UBQ6 330 aa4.37□□□□□ -1.71
USP40-213ENST00000483216 OR12D3Q9UGF7 316 aa4.37□□□□□ -1.71
USP40-213ENST00000483216 MRPS2Q9Y399 296 aaKnown RBP4.37□□□□□ -1.71
USP40-213ENST00000483216 CACNG2Q9Y698 323 aa4.37□□□□□ -1.71
USP40-213ENST00000483216 CDH10Q9Y6N8 788 aa4.37□□□□□ -1.71
USP40-213ENST00000483216 V9GYH0 126 aa4.37□□□□□ -1.71
USP40-213ENST00000483216 COL1A2P08123 1366 aa4.37□□□□□ -1.71
USP40-213ENST00000483216 MICAL3Q7RTP6 2002 aa4.36□□□□□ -1.71
USP40-213ENST00000483216 A0A0A6YYD4 124 aa4.36□□□□□ -1.71
USP40-213ENST00000483216 A0A0D9SG52 128 aa4.36□□□□□ -1.71
USP40-213ENST00000483216 TRDV1A0A1B0GX56 115 aa4.36□□□□□ -1.71
USP40-213ENST00000483216 C5orf51A6NDU8 294 aa4.36□□□□□ -1.71
USP40-213ENST00000483216 C5orf58C9J3I9 102 aa4.36□□□□□ -1.71
USP40-213ENST00000483216 D6RAR5 112 aa4.36□□□□□ -1.71
USP40-213ENST00000483216 CHEK1O14757 476 aa4.36□□□□□ -1.71
USP40-213ENST00000483216 PHYHO14832 338 aa4.36□□□□□ -1.71
USP40-213ENST00000483216 FABP7O15540 132 aa4.36□□□□□ -1.71
USP40-213ENST00000483216 SDC3O75056 442 aa4.36□□□□□ -1.71
USP40-213ENST00000483216 CRTAPO75718 401 aaPredicted RBP4.36□□□□□ -1.71
USP40-213ENST00000483216 OR4F21O95013 312 aa4.36□□□□□ -1.71
USP40-213ENST00000483216 UBBP0CG47 229 aa4.36□□□□□ -1.71
USP40-213ENST00000483216 UBCP0CG48 685 aaKnown RBP4.36□□□□□ -1.71
USP40-213ENST00000483216 IFI30P13284 250 aa4.36□□□□□ -1.71
USP40-213ENST00000483216 SPNP16150 400 aa4.36□□□□□ -1.71
USP40-213ENST00000483216 GPX2P18283 190 aa4.36□□□□□ -1.71
USP40-213ENST00000483216 NFYAP23511 347 aaPredicted RBP4.36□□□□□ -1.71
USP40-213ENST00000483216 PAX6P26367 422 aa4.36□□□□□ -1.71
USP40-213ENST00000483216 CCR1P32246 355 aa4.36□□□□□ -1.71
USP40-213ENST00000483216 CD79BP40259 229 aa4.36□□□□□ -1.71
USP40-213ENST00000483216 TNFRSF4P43489 277 aa4.36□□□□□ -1.71
USP40-213ENST00000483216 HAAOP46952 286 aa4.36□□□□□ -1.71
USP40-213ENST00000483216 RFX3P48380 749 aa4.36□□□□□ -1.71
USP40-213ENST00000483216 IDH2P48735 452 aaKnown RBP4.36□□□□□ -1.71
USP40-213ENST00000483216 EVX1P49640 407 aa4.36□□□□□ -1.71
USP40-213ENST00000483216 HNMTP50135 292 aa4.36□□□□□ -1.71
USP40-213ENST00000483216 DAPP51397 102 aa4.36□□□□□ -1.71
USP40-213ENST00000483216 STC1P52823 247 aa4.36□□□□□ -1.71
USP40-213ENST00000483216 ARFIP1P53367 373 aa4.36□□□□□ -1.71
USP40-213ENST00000483216 MFAP2P55001 183 aa4.36□□□□□ -1.71
USP40-213ENST00000483216 WNT4P56705 351 aa4.36□□□□□ -1.71
USP40-213ENST00000483216 MTPNP58546 118 aa4.36□□□□□ -1.71
USP40-213ENST00000483216 UBA52P62987 128 aaKnown RBP4.36□□□□□ -1.71
USP40-213ENST00000483216 HERV-K104P63124 156 aa4.36□□□□□ -1.71
USP40-213ENST00000483216 SELENOWP63302 87 aa4.36□□□□□ -1.71
USP40-213ENST00000483216 ACVR1Q04771 509 aa4.36□□□□□ -1.71
USP40-213ENST00000483216 MGAT3Q09327 533 aa4.36□□□□□ -1.71
USP40-213ENST00000483216 BTN1A1Q13410 526 aa4.36□□□□□ -1.71
USP40-213ENST00000483216 TPBGQ13641 420 aa4.36□□□□□ -1.71
USP40-213ENST00000483216 GRB7Q14451 532 aa4.36□□□□□ -1.71
USP40-213ENST00000483216 MPPED2Q15777 294 aa4.36□□□□□ -1.71
USP40-213ENST00000483216 GUCA2BQ16661 112 aa4.36□□□□□ -1.71
USP40-213ENST00000483216 ZNF630Q2M218 657 aaPredicted RBP4.36□□□□□ -1.71
USP40-213ENST00000483216 PABPC1L2AQ5JQF8 200 aa4.36□□□□□ -1.71
USP40-213ENST00000483216 PAGE3Q5JUK9 113 aa4.36□□□□□ -1.71
USP40-213ENST00000483216 DNLZQ5SXM8 178 aa4.36□□□□□ -1.71
USP40-213ENST00000483216 CELF3Q5SZQ8 465 aaKnown RBP4.36□□□□□ -1.71
USP40-213ENST00000483216 NXNL2Q5VZ03 156 aa4.36□□□□□ -1.71
USP40-213ENST00000483216 FAM219BQ5XKK7 198 aa4.36□□□□□ -1.71
USP40-213ENST00000483216 OR4F3Q6IEY1 312 aa4.36□□□□□ -1.71
USP40-213ENST00000483216 STEAP1BQ6NZ63 245 aa4.36□□□□□ -1.71
USP40-213ENST00000483216 KDELC1Q6UW63 502 aa4.36□□□□□ -1.71
USP40-213ENST00000483216 CES3Q6UWW8 571 aa4.36□□□□□ -1.71
USP40-213ENST00000483216 UNC5DQ6UXZ4 953 aa4.36□□□□□ -1.71
USP40-213ENST00000483216 OAFQ86UD1 273 aa4.36□□□□□ -1.71
USP40-213ENST00000483216 TOMM5Q8N4H5 51 aa4.36□□□□□ -1.71
USP40-213ENST00000483216 C10orf53Q8N6V4 93 aa4.36□□□□□ -1.71
USP40-213ENST00000483216 RELL2Q8NC24 303 aaPredicted RBP4.36□□□□□ -1.71
USP40-213ENST00000483216 FAM71CQ8NEG0 241 aa4.36□□□□□ -1.71
USP40-213ENST00000483216 IPMKQ8NFU5 416 aa4.36□□□□□ -1.71
USP40-213ENST00000483216 OR10G2Q8NGC3 310 aa4.36□□□□□ -1.71
USP40-213ENST00000483216 OR2T4Q8NH00 348 aa4.36□□□□□ -1.71
USP40-213ENST00000483216 GTSF1Q8WW33 167 aa4.36□□□□□ -1.71
USP40-213ENST00000483216 UCN3Q969E3 161 aa4.36□□□□□ -1.71
USP40-213ENST00000483216 CMTM7Q96FZ5 175 aa4.36□□□□□ -1.71
USP40-213ENST00000483216 C5orf30Q96GV9 206 aa4.36□□□□□ -1.71
USP40-213ENST00000483216 FICDQ9BVA6 458 aa4.36□□□□□ -1.71
USP40-213ENST00000483216 GSDMCQ9BYG8 508 aa4.36□□□□□ -1.71
USP40-213ENST00000483216 ABCG5Q9H222 651 aa4.36□□□□□ -1.71
USP40-213ENST00000483216 OR51E2Q9H255 320 aa4.36□□□□□ -1.71
USP40-213ENST00000483216 RDH14Q9HBH5 336 aa4.36□□□□□ -1.71
USP40-213ENST00000483216 LRTM1Q9HBL6 345 aa4.36□□□□□ -1.71
USP40-213ENST00000483216 ABCB9Q9NP78 766 aa4.36□□□□□ -1.71
USP40-213ENST00000483216 INPP5EQ9NRR6 644 aa4.36□□□□□ -1.71
USP40-213ENST00000483216 ZCCHC3Q9NUD5 404 aaKnown RBP4.36□□□□□ -1.71
USP40-213ENST00000483216 UFSP2Q9NUQ7 469 aa4.36□□□□□ -1.71
USP40-213ENST00000483216 C14orf105Q9NVL8 296 aa4.36□□□□□ -1.71
USP40-213ENST00000483216 RBM22Q9NW64 420 aaKnown RBP eCLIP4.36□□□□□ -1.71
USP40-213ENST00000483216 TAS2R8Q9NYW2 309 aa4.36□□□□□ -1.71
USP40-213ENST00000483216 ABRACLQ9P1F3 81 aa4.36□□□□□ -1.71
USP40-213ENST00000483216 CYTH4Q9UIA0 394 aa4.36□□□□□ -1.71
USP40-213ENST00000483216 PURGQ9UJV8 347 aaKnown RBP4.36□□□□□ -1.71
USP40-213ENST00000483216 PCTPQ9UKL6 214 aa4.36□□□□□ -1.71
USP40-213ENST00000483216 ZNF490Q9ULM2 529 aaPredicted RBP4.36□□□□□ -1.71
USP40-213ENST00000483216 ANGPT4Q9Y264 503 aa4.36□□□□□ -1.71
USP40-213ENST00000483216 CBY1Q9Y3M2 126 aa4.36□□□□□ -1.71
USP40-213ENST00000483216 MCM3APO60318 1980 aa4.36□□□□□ -1.71
USP40-213ENST00000483216 ZSWIM8A7E2V4 1837 aa4.35□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms