RNA–Protein interactions for RNA: ENST00000480744.2

LIMS3-203, Transcript of LIM zinc finger domain containing 3, humanhuman

APPRIS P1 TSL 5 BASIC

Gene LIMS3, Length 1,197 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-203ENST00000480744 CDH10Q9Y6N8 788 aa12.74□□□□□ -0.37
LIMS3-203ENST00000480744 GGT3PA6NGU5 568 aa12.73□□□□□ -0.37
LIMS3-203ENST00000480744 CA6P23280 308 aa12.73□□□□□ -0.37
LIMS3-203ENST00000480744 CD200P41217 278 aa12.73□□□□□ -0.37
LIMS3-203ENST00000480744 GATA4P43694 442 aa12.73□□□□□ -0.37
LIMS3-203ENST00000480744 MTNR1AP48039 350 aa12.73□□□□□ -0.37
LIMS3-203ENST00000480744 MNAT1P51948 309 aa12.73□□□□□ -0.37
LIMS3-203ENST00000480744 PAX2Q02962 417 aa12.73□□□□□ -0.37
LIMS3-203ENST00000480744 LYPD4Q6UWN0 246 aa12.73□□□□□ -0.37
LIMS3-203ENST00000480744 OR51L1Q8NGJ5 315 aa12.73□□□□□ -0.37
LIMS3-203ENST00000480744 OR2T4Q8NH00 348 aa12.73□□□□□ -0.37
LIMS3-203ENST00000480744 OR2AE1Q8NHA4 323 aa12.73□□□□□ -0.37
LIMS3-203ENST00000480744 SLC25A28Q96A46 364 aa12.73□□□□□ -0.37
LIMS3-203ENST00000480744 UPRTQ96BW1 309 aa12.73□□□□□ -0.37
LIMS3-203ENST00000480744 SLC7A6OSQ96CW6 309 aaPredicted RBP12.73□□□□□ -0.37
LIMS3-203ENST00000480744 CLPTM1LQ96KA5 538 aa12.73□□□□□ -0.37
LIMS3-203ENST00000480744 NUDT16L1Q9BRJ7 211 aaKnown RBP12.73□□□□□ -0.37
LIMS3-203ENST00000480744 ADAT1Q9BUB4 502 aaKnown RBP12.73□□□□□ -0.37
LIMS3-203ENST00000480744 TBC1D23Q9NUY8 699 aa12.73□□□□□ -0.37
LIMS3-203ENST00000480744 NDE1Q9NXR1 346 aa12.73□□□□□ -0.37
LIMS3-203ENST00000480744 N6AMT1Q9Y5N5 214 aa12.73□□□□□ -0.37
LIMS3-203ENST00000480744 MDFIC2A0A1B0GVS7 189 aa12.72□□□□□ -0.37
LIMS3-203ENST00000480744 A0A1B0GWJ7 208 aa12.72□□□□□ -0.37
LIMS3-203ENST00000480744 CD300LBA8K4G0 201 aa12.72□□□□□ -0.37
LIMS3-203ENST00000480744 TNFRSF11BO00300 401 aa12.72□□□□□ -0.37
LIMS3-203ENST00000480744 SPARCP09486 303 aa12.72□□□□□ -0.37
LIMS3-203ENST00000480744 ATP6V1B2P21281 511 aa12.72□□□□□ -0.37
LIMS3-203ENST00000480744 HOXA4Q00056 320 aaPredicted RBP12.72□□□□□ -0.37
LIMS3-203ENST00000480744 TAF13Q15543 124 aa12.72□□□□□ -0.37
LIMS3-203ENST00000480744 MPPED2Q15777 294 aa12.72□□□□□ -0.37
LIMS3-203ENST00000480744 TUSC1Q2TAM9 212 aa12.72□□□□□ -0.37
LIMS3-203ENST00000480744 SNAI3Q3KNW1 292 aa12.72□□□□□ -0.37
LIMS3-203ENST00000480744 RPL13AP3Q6NVV1 102 aa12.72□□□□□ -0.37
LIMS3-203ENST00000480744 CYP2R1Q6VVX0 501 aa12.72□□□□□ -0.37
LIMS3-203ENST00000480744 DCDC5Q6ZRR9 648 aa12.72□□□□□ -0.37
LIMS3-203ENST00000480744 LNX2Q8N448 690 aa12.72□□□□□ -0.37
LIMS3-203ENST00000480744 CELF2-AS1Q8N7Q2 184 aa12.72□□□□□ -0.37
LIMS3-203ENST00000480744 OR10S1Q8NGN2 331 aa12.72□□□□□ -0.37
LIMS3-203ENST00000480744 OR9Q1Q8NGQ5 310 aa12.72□□□□□ -0.37
LIMS3-203ENST00000480744 Q8TCH9 128 aa12.72□□□□□ -0.37
LIMS3-203ENST00000480744 ERGIC1Q969X5 290 aa12.72□□□□□ -0.37
LIMS3-203ENST00000480744 TECTBQ96PL2 329 aa12.72□□□□□ -0.37
LIMS3-203ENST00000480744 COPS4Q9BT78 406 aa12.72□□□□□ -0.37
LIMS3-203ENST00000480744 ZNF747Q9BV97 191 aa12.72□□□□□ -0.37
LIMS3-203ENST00000480744 FN3KRPQ9HA64 309 aa12.72□□□□□ -0.37
LIMS3-203ENST00000480744 NOP16Q9Y3C1 178 aaKnown RBP12.72□□□□□ -0.37
LIMS3-203ENST00000480744 LYVE1Q9Y5Y7 322 aa12.72□□□□□ -0.37
LIMS3-203ENST00000480744 KIR2DS1A0A191URI9 304 aa12.71□□□□□ -0.37
LIMS3-203ENST00000480744 BHLHE40O14503 412 aa12.71□□□□□ -0.37
LIMS3-203ENST00000480744 PHYHO14832 338 aa12.71□□□□□ -0.37
LIMS3-203ENST00000480744 KRT36O76013 467 aa12.71□□□□□ -0.37
LIMS3-203ENST00000480744 FSTL3O95633 263 aa12.71□□□□□ -0.37
LIMS3-203ENST00000480744 RNASE1P07998 156 aaKnown RBP12.71□□□□□ -0.37
LIMS3-203ENST00000480744 PPIAL4GP0DN37 164 aa12.71□□□□□ -0.37
LIMS3-203ENST00000480744 PRKXP51817 358 aa12.71□□□□□ -0.37
LIMS3-203ENST00000480744 FGF12P61328 243 aa12.71□□□□□ -0.37
LIMS3-203ENST00000480744 ZNF92Q03936 586 aa12.71□□□□□ -0.37
LIMS3-203ENST00000480744 PPP1R8Q12972 351 aaKnown RBP12.71□□□□□ -0.37
LIMS3-203ENST00000480744 SLC9A3R2Q15599 337 aa12.71□□□□□ -0.37
LIMS3-203ENST00000480744 GLYATL3Q5SZD4 288 aa12.71□□□□□ -0.37
LIMS3-203ENST00000480744 WDR25Q64LD2 544 aaPredicted RBP12.71□□□□□ -0.37
LIMS3-203ENST00000480744 SFRP4Q6FHJ7 346 aaPredicted RBP12.71□□□□□ -0.37
LIMS3-203ENST00000480744 SHISA2Q6UWI4 295 aa12.71□□□□□ -0.37
LIMS3-203ENST00000480744 BRD3OSQ6XYD6 125 aa12.71□□□□□ -0.37
LIMS3-203ENST00000480744 SPATC1Q76KD6 591 aa12.71□□□□□ -0.37
LIMS3-203ENST00000480744 DCXRQ7Z4W1 244 aa12.71□□□□□ -0.37
LIMS3-203ENST00000480744 SLC37A3Q8NCC5 494 aa12.71□□□□□ -0.37
LIMS3-203ENST00000480744 OR8D4Q8NGM9 314 aa12.71□□□□□ -0.37
LIMS3-203ENST00000480744 ZNRF4Q8WWF5 429 aa12.71□□□□□ -0.37
LIMS3-203ENST00000480744 TAF15Q92804 592 aaKnown RBP eCLIP12.71□□□□□ -0.37
LIMS3-203ENST00000480744 BTBD10Q9BSF8 475 aa12.71□□□□□ -0.37
LIMS3-203ENST00000480744 SLC22A4Q9H015 551 aa12.71□□□□□ -0.37
LIMS3-203ENST00000480744 C1orf21Q9H246 121 aa12.71□□□□□ -0.37
LIMS3-203ENST00000480744 CENPMQ9NSP4 180 aa12.71□□□□□ -0.37
LIMS3-203ENST00000480744 RNF7Q9UBF6 113 aa12.71□□□□□ -0.37
LIMS3-203ENST00000480744 COMMD3-BMI1R4GMX3 469 aa12.71□□□□□ -0.37
LIMS3-203ENST00000480744 C5orf63A6NC05 138 aa12.7□□□□□ -0.38
LIMS3-203ENST00000480744 C3orf80F5H4A9 247 aa12.7□□□□□ -0.38
LIMS3-203ENST00000480744 TMPRSS2O15393 492 aa12.7□□□□□ -0.38
LIMS3-203ENST00000480744 CCNB2O95067 398 aa12.7□□□□□ -0.38
LIMS3-203ENST00000480744 PLATP00750 562 aa12.7□□□□□ -0.38
LIMS3-203ENST00000480744 GYPBP06028 91 aa12.7□□□□□ -0.38
LIMS3-203ENST00000480744 SLC2A1P11166 492 aa12.7□□□□□ -0.38
LIMS3-203ENST00000480744 PSKH1P11801 424 aa12.7□□□□□ -0.38
LIMS3-203ENST00000480744 ANOS1P23352 680 aa12.7□□□□□ -0.38
LIMS3-203ENST00000480744 FMO3P31513 532 aa12.7□□□□□ -0.38
LIMS3-203ENST00000480744 MS4A2Q01362 244 aa12.7□□□□□ -0.38
LIMS3-203ENST00000480744 OR8B8Q15620 311 aa12.7□□□□□ -0.38
LIMS3-203ENST00000480744 SPATS1Q496A3 300 aa12.7□□□□□ -0.38
LIMS3-203ENST00000480744 DRAM2Q6UX65 266 aa12.7□□□□□ -0.38
LIMS3-203ENST00000480744 C9orf139Q6ZV77 190 aa12.7□□□□□ -0.38
LIMS3-203ENST00000480744 LINC00471Q8N535 108 aa12.7□□□□□ -0.38
LIMS3-203ENST00000480744 OR4C15Q8NGM1 316 aa12.7□□□□□ -0.38
LIMS3-203ENST00000480744 ZDHHC16Q969W1 377 aa12.7□□□□□ -0.38
LIMS3-203ENST00000480744 DACT3Q96B18 629 aaPredicted RBP12.7□□□□□ -0.38
LIMS3-203ENST00000480744 PCGF1Q9BSM1 259 aa12.7□□□□□ -0.38
LIMS3-203ENST00000480744 TSSK6Q9BXA6 273 aa12.7□□□□□ -0.38
LIMS3-203ENST00000480744 UNKLQ9H9P5 680 aaKnown RBP12.7□□□□□ -0.38
LIMS3-203ENST00000480744 C1orf123Q9NWV4 160 aa12.7□□□□□ -0.38
LIMS3-203ENST00000480744 MGAM2Q2M2H8 2515 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms