RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 ASAH2BP0C7U1 165 aa13.1□□□□□ -0.31
HDAC6-220ENST00000477528 RIN1Q13671 783 aa13.1□□□□□ -0.31
HDAC6-220ENST00000477528 RHEBQ15382 184 aa13.1□□□□□ -0.31
HDAC6-220ENST00000477528 OR1S1Q8NH92 325 aa13.1□□□□□ -0.31
HDAC6-220ENST00000477528 MED30Q96HR3 178 aa13.1□□□□□ -0.31
HDAC6-220ENST00000477528 ARL5BQ96KC2 179 aa13.1□□□□□ -0.31
HDAC6-220ENST00000477528 DLL4Q9NR61 685 aa13.1□□□□□ -0.31
HDAC6-220ENST00000477528 IFNA2P01563 188 aa13.1□□□□□ -0.31
HDAC6-220ENST00000477528 FAM199XQ6PEV8 388 aaPredicted RBP13.1□□□□□ -0.31
HDAC6-220ENST00000477528 IER2Q9BTL4 223 aa13.1□□□□□ -0.31
HDAC6-220ENST00000477528 THY1P04216 161 aa13.09□□□□□ -0.31
HDAC6-220ENST00000477528 NGFRP08138 427 aa13.09□□□□□ -0.31
HDAC6-220ENST00000477528 RAB6AP20340 208 aa13.09□□□□□ -0.31
HDAC6-220ENST00000477528 IKZF1Q13422 519 aa13.09□□□□□ -0.31
HDAC6-220ENST00000477528 ZNF169Q14929 603 aaPredicted RBP13.09□□□□□ -0.31
HDAC6-220ENST00000477528 LYG2Q86SG7 212 aa13.09□□□□□ -0.31
HDAC6-220ENST00000477528 SPICQ8N5J4 248 aa13.09□□□□□ -0.31
HDAC6-220ENST00000477528 TINAGL1Q9GZM7 467 aaPredicted RBP13.09□□□□□ -0.31
HDAC6-220ENST00000477528 ZNF275Q9NSD4 429 aaPredicted RBP13.09□□□□□ -0.31
HDAC6-220ENST00000477528 SLC23A1Q9UHI7 598 aa13.09□□□□□ -0.31
HDAC6-220ENST00000477528 PCDHGA5Q9Y5G8 931 aa13.09□□□□□ -0.31
HDAC6-220ENST00000477528 ACOT7LQ6ZUV0 252 aa13.09□□□□□ -0.31
HDAC6-220ENST00000477528 LIX1LQ8IVB5 337 aa13.09□□□□□ -0.31
HDAC6-220ENST00000477528 RFLNBQ8N5W9 214 aa13.09□□□□□ -0.31
HDAC6-220ENST00000477528 RNF141Q8WVD5 230 aa13.09□□□□□ -0.31
HDAC6-220ENST00000477528 APH1AQ96BI3 265 aa13.09□□□□□ -0.31
HDAC6-220ENST00000477528 DOCK6Q96HP0 2047 aa13.09□□□□□ -0.31
HDAC6-220ENST00000477528 AGPAT2O15120 278 aa13.09□□□□□ -0.31
HDAC6-220ENST00000477528 THBS4P35443 961 aa13.09□□□□□ -0.31
HDAC6-220ENST00000477528 RRADP55042 308 aa13.09□□□□□ -0.31
HDAC6-220ENST00000477528 SRPXP78539 464 aa13.09□□□□□ -0.31
HDAC6-220ENST00000477528 IGLV3-21P80748 117 aaPredicted RBP13.09□□□□□ -0.31
HDAC6-220ENST00000477528 PNLIPRP3Q17RR3 467 aa13.09□□□□□ -0.31
HDAC6-220ENST00000477528 PRR18Q8N4B5 295 aa13.09□□□□□ -0.31
HDAC6-220ENST00000477528 PP6455Q8WZ26 134 aa13.09□□□□□ -0.31
HDAC6-220ENST00000477528 SULT4A1Q9BR01 284 aa13.09□□□□□ -0.31
HDAC6-220ENST00000477528 UNKLQ9H9P5 680 aaKnown RBP13.09□□□□□ -0.31
HDAC6-220ENST00000477528 LRFN1Q9P244 771 aa13.09□□□□□ -0.31
HDAC6-220ENST00000477528 SPAG17Q6Q759 2223 aa13.09□□□□□ -0.31
HDAC6-220ENST00000477528 TUBAL3A6NHL2 446 aa13.09□□□□□ -0.31
HDAC6-220ENST00000477528 B8ZZF3 427 aa13.09□□□□□ -0.31
HDAC6-220ENST00000477528 BET1O15155 118 aa13.09□□□□□ -0.31
HDAC6-220ENST00000477528 LANCL1O43813 399 aa13.09□□□□□ -0.31
HDAC6-220ENST00000477528 ZIC2O95409 532 aaPredicted RBP13.09□□□□□ -0.31
HDAC6-220ENST00000477528 TXNDC12O95881 172 aa13.09□□□□□ -0.31
HDAC6-220ENST00000477528 PLA1AQ53H76 456 aa13.09□□□□□ -0.31
HDAC6-220ENST00000477528 AKR1C8PQ5T2L2 129 aa13.09□□□□□ -0.31
HDAC6-220ENST00000477528 FBXW12Q6X9E4 464 aa13.09□□□□□ -0.31
HDAC6-220ENST00000477528 ZSCAN1Q8NBB4 408 aa13.09□□□□□ -0.31
HDAC6-220ENST00000477528 PGLYRP3Q96LB9 341 aa13.09□□□□□ -0.31
HDAC6-220ENST00000477528 DUSP15Q9H1R2 295 aaPredicted RBP13.09□□□□□ -0.31
HDAC6-220ENST00000477528 HRH4Q9H3N8 390 aa13.09□□□□□ -0.31
HDAC6-220ENST00000477528 IGHV3-9P01782 118 aa13.08□□□□□ -0.32
HDAC6-220ENST00000477528 LINC00271P0C7V0 271 aa13.08□□□□□ -0.32
HDAC6-220ENST00000477528 ABOP16442 354 aa13.08□□□□□ -0.32
HDAC6-220ENST00000477528 RBM39Q14498 530 aaKnown RBP13.08□□□□□ -0.32
HDAC6-220ENST00000477528 WDR5BQ86VZ2 330 aa13.08□□□□□ -0.32
HDAC6-220ENST00000477528 IL1F10Q8WWZ1 152 aa13.08□□□□□ -0.32
HDAC6-220ENST00000477528 ZPBPQ9BS86 351 aa13.08□□□□□ -0.32
HDAC6-220ENST00000477528 SLC25A31Q9H0C2 315 aa13.08□□□□□ -0.32
HDAC6-220ENST00000477528 NELFAQ9H3P2 528 aa13.08□□□□□ -0.32
HDAC6-220ENST00000477528 PCDHGA9Q9Y5G4 932 aaKnown RBP13.08□□□□□ -0.32
HDAC6-220ENST00000477528 RECKO95980 971 aa13.08□□□□□ -0.32
HDAC6-220ENST00000477528 WNT11O96014 354 aa13.08□□□□□ -0.32
HDAC6-220ENST00000477528 CTSBP07858 339 aa13.08□□□□□ -0.32
HDAC6-220ENST00000477528 EPHA1P21709 976 aa13.08□□□□□ -0.32
HDAC6-220ENST00000477528 GCH1P30793 250 aa13.08□□□□□ -0.32
HDAC6-220ENST00000477528 NANOS3P60323 173 aaKnown RBP13.08□□□□□ -0.32
HDAC6-220ENST00000477528 OGFOD3Q6PK18 319 aa13.08□□□□□ -0.32
HDAC6-220ENST00000477528 OR2W3Q7Z3T1 314 aa13.08□□□□□ -0.32
HDAC6-220ENST00000477528 SLC38A9Q8NBW4 561 aa13.08□□□□□ -0.32
HDAC6-220ENST00000477528 NKX3-1Q99801 234 aaPredicted RBP13.08□□□□□ -0.32
HDAC6-220ENST00000477528 CCDC86Q9H6F5 360 aaKnown RBP13.08□□□□□ -0.32
HDAC6-220ENST00000477528 SDHAF2Q9NX18 166 aa13.08□□□□□ -0.32
HDAC6-220ENST00000477528 LIPT2A6NK58 231 aa13.08□□□□□ -0.32
HDAC6-220ENST00000477528 GMDSO60547 372 aa13.08□□□□□ -0.32
HDAC6-220ENST00000477528 IL9P15248 144 aa13.08□□□□□ -0.32
HDAC6-220ENST00000477528 MGMTP16455 207 aa13.08□□□□□ -0.32
HDAC6-220ENST00000477528 SERPINF1P36955 418 aa13.08□□□□□ -0.32
HDAC6-220ENST00000477528 BTN1A1Q13410 526 aa13.08□□□□□ -0.32
HDAC6-220ENST00000477528 KLF9Q13886 244 aaPredicted RBP13.08□□□□□ -0.32
HDAC6-220ENST00000477528 MARCH1Q8TCQ1 289 aa13.08□□□□□ -0.32
HDAC6-220ENST00000477528 MCHR2Q969V1 340 aa13.08□□□□□ -0.32
HDAC6-220ENST00000477528 FAM166BA8MTA8 275 aa13.08□□□□□ -0.32
HDAC6-220ENST00000477528 FBXO24O75426 580 aa13.08□□□□□ -0.32
HDAC6-220ENST00000477528 MED6O75586 246 aa13.08□□□□□ -0.32
HDAC6-220ENST00000477528 FOXK1P85037 733 aa13.08□□□□□ -0.32
HDAC6-220ENST00000477528 LHFPL2Q6ZUX7 228 aa13.08□□□□□ -0.32
HDAC6-220ENST00000477528 OR4S1Q8NGB4 309 aa13.08□□□□□ -0.32
HDAC6-220ENST00000477528 REEP6Q96HR9 211 aa13.08□□□□□ -0.32
HDAC6-220ENST00000477528 LHX6Q9UPM6 363 aa13.08□□□□□ -0.32
HDAC6-220ENST00000477528 RER1O15258 196 aa13.07□□□□□ -0.32
HDAC6-220ENST00000477528 ICMTO60725 284 aa13.07□□□□□ -0.32
HDAC6-220ENST00000477528 PSMB6P28072 239 aa13.07□□□□□ -0.32
HDAC6-220ENST00000477528 OR6K3Q8NGY3 331 aa13.07□□□□□ -0.32
HDAC6-220ENST00000477528 TWSG1Q9GZX9 223 aa13.07□□□□□ -0.32
HDAC6-220ENST00000477528 LANCL2Q9NS86 450 aa13.07□□□□□ -0.32
HDAC6-220ENST00000477528 A0A1B0GV50 99 aa13.07□□□□□ -0.32
HDAC6-220ENST00000477528 OR6C65A6NJZ3 312 aa13.07□□□□□ -0.32
HDAC6-220ENST00000477528 NUPL2O15504 423 aaKnown RBP13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms