RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 PLGRKTQ9HBL7 147 aa3.32□□□□□ -1.88
VPS29-202ENST00000447578 IL36GQ9NZH8 169 aa3.32□□□□□ -1.88
VPS29-202ENST00000447578 PDP1Q9P0J1 537 aaPredicted RBP3.32□□□□□ -1.88
VPS29-202ENST00000447578 ZNF282Q9UDV7 671 aaPredicted RBP3.32□□□□□ -1.88
VPS29-202ENST00000447578 MLXQ9UH92 298 aa3.32□□□□□ -1.88
VPS29-202ENST00000447578 BTNL2Q9UIR0 455 aa3.32□□□□□ -1.88
VPS29-202ENST00000447578 SPATA2Q9UM82 520 aa3.32□□□□□ -1.88
VPS29-202ENST00000447578 TPRKBQ9Y3C4 175 aa3.32□□□□□ -1.88
VPS29-202ENST00000447578 TANC1Q9C0D5 1861 aa3.32□□□□□ -1.88
VPS29-202ENST00000447578 GREB1Q4ZG55 1949 aa3.32□□□□□ -1.88
VPS29-202ENST00000447578 DOCK4Q8N1I0 1966 aa3.32□□□□□ -1.88
VPS29-202ENST00000447578 IGLV4-3A0A075B6K6 122 aa3.31□□□□□ -1.88
VPS29-202ENST00000447578 BTBD17A6NE02 478 aa3.31□□□□□ -1.88
VPS29-202ENST00000447578 A8MXK9 166 aa3.31□□□□□ -1.88
VPS29-202ENST00000447578 ZNF99A8MXY4 864 aaPredicted RBP3.31□□□□□ -1.88
VPS29-202ENST00000447578 PSMD11O00231 422 aa3.31□□□□□ -1.88
VPS29-202ENST00000447578 FCN1O00602 326 aa3.31□□□□□ -1.88
VPS29-202ENST00000447578 NBR2O15453 112 aa3.31□□□□□ -1.88
VPS29-202ENST00000447578 IDH3BO43837 385 aa3.31□□□□□ -1.88
VPS29-202ENST00000447578 PFDN1O60925 122 aa3.31□□□□□ -1.88
VPS29-202ENST00000447578 SCN2BO60939 215 aa3.31□□□□□ -1.88
VPS29-202ENST00000447578 C6orf47O95873 294 aa3.31□□□□□ -1.88
VPS29-202ENST00000447578 SOD1P00441 154 aa3.31□□□□□ -1.88
VPS29-202ENST00000447578 OPN1SWP03999 348 aa3.31□□□□□ -1.88
VPS29-202ENST00000447578 KLK1P06870 262 aa3.31□□□□□ -1.88
VPS29-202ENST00000447578 PVRP15151 417 aa3.31□□□□□ -1.88
VPS29-202ENST00000447578 GALP22466 123 aa3.31□□□□□ -1.88
VPS29-202ENST00000447578 PPIBP23284 216 aaKnown RBP3.31□□□□□ -1.88
VPS29-202ENST00000447578 HOXA9P31269 272 aa3.31□□□□□ -1.88
VPS29-202ENST00000447578 RRM2P31350 389 aa3.31□□□□□ -1.88
VPS29-202ENST00000447578 CRATP43155 626 aa3.31□□□□□ -1.88
VPS29-202ENST00000447578 MAGEA2P43356 314 aa3.31□□□□□ -1.88
VPS29-202ENST00000447578 RANBP1P43487 201 aa3.31□□□□□ -1.88
VPS29-202ENST00000447578 MAP2K4P45985 399 aa3.31□□□□□ -1.88
VPS29-202ENST00000447578 TMBIM6P55061 237 aa3.31□□□□□ -1.88
VPS29-202ENST00000447578 VLDLRP98155 873 aa3.31□□□□□ -1.88
VPS29-202ENST00000447578 ZNF763Q0D2J5 394 aa3.31□□□□□ -1.88
VPS29-202ENST00000447578 RIPPLY1Q0D2K3 151 aa3.31□□□□□ -1.88
VPS29-202ENST00000447578 C2orf80Q0P641 193 aa3.31□□□□□ -1.88
VPS29-202ENST00000447578 TMED1Q13445 227 aa3.31□□□□□ -1.88
VPS29-202ENST00000447578 RGNQ15493 299 aa3.31□□□□□ -1.88
VPS29-202ENST00000447578 SLC5A12Q1EHB4 618 aa3.31□□□□□ -1.88
VPS29-202ENST00000447578 BCL7AQ4VC05 210 aa3.31□□□□□ -1.88
VPS29-202ENST00000447578 C14orf28Q4W4Y0 310 aa3.31□□□□□ -1.88
VPS29-202ENST00000447578 TP53I3Q53FA7 332 aa3.31□□□□□ -1.88
VPS29-202ENST00000447578 SPIN4Q56A73 249 aa3.31□□□□□ -1.88
VPS29-202ENST00000447578 PAGE2BQ5JRK9 111 aa3.31□□□□□ -1.88
VPS29-202ENST00000447578 XAF1Q6GPH4 301 aa3.31□□□□□ -1.88
VPS29-202ENST00000447578 OR2A2Q6IF42 318 aa3.31□□□□□ -1.88
VPS29-202ENST00000447578 LINC01561Q8N1V8 128 aa3.31□□□□□ -1.88
VPS29-202ENST00000447578 C2orf73Q8N5S3 287 aaPredicted RBP3.31□□□□□ -1.88
VPS29-202ENST00000447578 TTC29Q8NA56 475 aaPredicted RBP3.31□□□□□ -1.88
VPS29-202ENST00000447578 PRSS33Q8NF86 280 aa3.31□□□□□ -1.88
VPS29-202ENST00000447578 OR1L4Q8NGR5 311 aa3.31□□□□□ -1.88
VPS29-202ENST00000447578 FAM81AQ8TBF8 368 aa3.31□□□□□ -1.88
VPS29-202ENST00000447578 FNDC8Q8TC99 324 aa3.31□□□□□ -1.88
VPS29-202ENST00000447578 CXorf40AQ8TE69 158 aa3.31□□□□□ -1.88
VPS29-202ENST00000447578 ZFP90Q8TF47 636 aa3.31□□□□□ -1.88
VPS29-202ENST00000447578 C16orf78Q8WTQ4 265 aa3.31□□□□□ -1.88
VPS29-202ENST00000447578 RAB2BQ8WUD1 216 aa3.31□□□□□ -1.88
VPS29-202ENST00000447578 GTF3AQ92664 365 aaKnown RBP3.31□□□□□ -1.88
VPS29-202ENST00000447578 RORBQ92753 470 aa3.31□□□□□ -1.88
VPS29-202ENST00000447578 BADQ92934 168 aa3.31□□□□□ -1.88
VPS29-202ENST00000447578 BORCS5Q969J3 196 aa3.31□□□□□ -1.88
VPS29-202ENST00000447578 MAL2Q969L2 176 aa3.31□□□□□ -1.88
VPS29-202ENST00000447578 NEIL2Q969S2 332 aa3.31□□□□□ -1.88
VPS29-202ENST00000447578 CIDECQ96AQ7 238 aaPredicted RBP3.31□□□□□ -1.88
VPS29-202ENST00000447578 PPCDCQ96CD2 204 aa3.31□□□□□ -1.88
VPS29-202ENST00000447578 ART5Q96L15 291 aa3.31□□□□□ -1.88
VPS29-202ENST00000447578 OR5B2Q96R09 309 aa3.31□□□□□ -1.88
VPS29-202ENST00000447578 DOK1Q99704 481 aa3.31□□□□□ -1.88
VPS29-202ENST00000447578 APOL4Q9BPW4 351 aa3.31□□□□□ -1.88
VPS29-202ENST00000447578 SLC35A5Q9BS91 424 aa3.31□□□□□ -1.88
VPS29-202ENST00000447578 CHCHD5Q9BSY4 110 aa3.31□□□□□ -1.88
VPS29-202ENST00000447578 CHRDL1Q9BU40 450 aa3.31□□□□□ -1.88
VPS29-202ENST00000447578 EFCAB11Q9BUY7 163 aa3.31□□□□□ -1.88
VPS29-202ENST00000447578 OR2AG1Q9H205 316 aa3.31□□□□□ -1.88
VPS29-202ENST00000447578 REEP4Q9H6H4 257 aa3.31□□□□□ -1.88
VPS29-202ENST00000447578 MEPEQ9NQ76 525 aaPredicted RBP3.31□□□□□ -1.88
VPS29-202ENST00000447578 DYRK4Q9NR20 520 aa3.31□□□□□ -1.88
VPS29-202ENST00000447578 PAK1IP1Q9NWT1 392 aaPredicted RBP3.31□□□□□ -1.88
VPS29-202ENST00000447578 THUMPD1Q9NXG2 353 aaKnown RBP3.31□□□□□ -1.88
VPS29-202ENST00000447578 SCN3BQ9NY72 215 aa3.31□□□□□ -1.88
VPS29-202ENST00000447578 TMEM9Q9P0T7 183 aa3.31□□□□□ -1.88
VPS29-202ENST00000447578 WARS2Q9UGM6 360 aaKnown RBP3.31□□□□□ -1.88
VPS29-202ENST00000447578 PSME2Q9UL46 239 aa3.31□□□□□ -1.88
VPS29-202ENST00000447578 IFT52Q9Y366 437 aa3.31□□□□□ -1.88
VPS29-202ENST00000447578 TIMM10BQ9Y5J6 103 aa3.31□□□□□ -1.88
VPS29-202ENST00000447578 NPTNQ9Y639 398 aa3.31□□□□□ -1.88
VPS29-202ENST00000447578 MEX3AA1L020 520 aaKnown RBP3.3□□□□□ -1.88
VPS29-202ENST00000447578 RPL37AP8A6NKH3 93 aa3.3□□□□□ -1.88
VPS29-202ENST00000447578 KRTAP16-1A8MUX0 517 aa3.3□□□□□ -1.88
VPS29-202ENST00000447578 G3V4G9 280 aa3.3□□□□□ -1.88
VPS29-202ENST00000447578 H0YC42 278 aa3.3□□□□□ -1.88
VPS29-202ENST00000447578 J3QRK9 145 aa3.3□□□□□ -1.88
VPS29-202ENST00000447578 M0QX08 132 aa3.3□□□□□ -1.88
VPS29-202ENST00000447578 TNFRSF11BO00300 401 aa3.3□□□□□ -1.88
VPS29-202ENST00000447578 RS1O15537 224 aa3.3□□□□□ -1.88
VPS29-202ENST00000447578 PI15O43692 258 aa3.3□□□□□ -1.88
VPS29-202ENST00000447578 KRT75O95678 551 aa3.3□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms