RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 NPTNQ9Y639 398 aa12.85□□□□□ -0.35
LIMS3-201ENST00000437679 GGT3PA6NGU5 568 aa12.84□□□□□ -0.35
LIMS3-201ENST00000437679 FAM157AC9JC47 383 aa12.84□□□□□ -0.35
LIMS3-201ENST00000437679 IFNL4K9M1U5 179 aa12.84□□□□□ -0.35
LIMS3-201ENST00000437679 EBAG9O00559 213 aa12.84□□□□□ -0.35
LIMS3-201ENST00000437679 XRCC2O43543 280 aa12.84□□□□□ -0.35
LIMS3-201ENST00000437679 SELENOFO60613 162 aa12.84□□□□□ -0.35
LIMS3-201ENST00000437679 ANXA2P07355 339 aaKnown RBP12.84□□□□□ -0.35
LIMS3-201ENST00000437679 MSMBP08118 114 aa12.84□□□□□ -0.35
LIMS3-201ENST00000437679 H2BFMP0C1H6 154 aa12.84□□□□□ -0.35
LIMS3-201ENST00000437679 SLC2A1P11166 492 aa12.84□□□□□ -0.35
LIMS3-201ENST00000437679 CX3CR1P49238 355 aa12.84□□□□□ -0.35
LIMS3-201ENST00000437679 RAD23AP54725 363 aa12.84□□□□□ -0.35
LIMS3-201ENST00000437679 ZNF92Q03936 586 aa12.84□□□□□ -0.35
LIMS3-201ENST00000437679 APOFQ13790 326 aa12.84□□□□□ -0.35
LIMS3-201ENST00000437679 CR1LQ2VPA4 569 aa12.84□□□□□ -0.35
LIMS3-201ENST00000437679 GLYATL3Q5SZD4 288 aa12.84□□□□□ -0.35
LIMS3-201ENST00000437679 KDM4DQ6B0I6 523 aa12.84□□□□□ -0.35
LIMS3-201ENST00000437679 RHOUQ7L0Q8 258 aa12.84□□□□□ -0.35
LIMS3-201ENST00000437679 HIST2H2ABQ8IUE6 130 aaPredicted RBP12.84□□□□□ -0.35
LIMS3-201ENST00000437679 BBS1Q8NFJ9 593 aa12.84□□□□□ -0.35
LIMS3-201ENST00000437679 OR2AE1Q8NHA4 323 aa12.84□□□□□ -0.35
LIMS3-201ENST00000437679 OTOSQ8NHW6 89 aa12.84□□□□□ -0.35
LIMS3-201ENST00000437679 THEM6Q8WUY1 208 aa12.84□□□□□ -0.35
LIMS3-201ENST00000437679 CENPNQ96H22 339 aaPredicted RBP12.84□□□□□ -0.35
LIMS3-201ENST00000437679 MEGF10Q96KG7 1140 aa12.84□□□□□ -0.35
LIMS3-201ENST00000437679 SLC22A4Q9H015 551 aa12.84□□□□□ -0.35
LIMS3-201ENST00000437679 SEMA6AQ9H2E6 1030 aa12.84□□□□□ -0.35
LIMS3-201ENST00000437679 OPA3Q9H6K4 179 aa12.84□□□□□ -0.35
LIMS3-201ENST00000437679 LPAR2Q9HBW0 351 aa12.84□□□□□ -0.35
LIMS3-201ENST00000437679 TMEFF2Q9UIK5 374 aaPredicted RBP12.84□□□□□ -0.35
LIMS3-201ENST00000437679 NOP16Q9Y3C1 178 aaKnown RBP12.84□□□□□ -0.35
LIMS3-201ENST00000437679 CD300LBA8K4G0 201 aa12.83□□□□□ -0.36
LIMS3-201ENST00000437679 H0YL77 283 aa12.83□□□□□ -0.36
LIMS3-201ENST00000437679 MLNRO43193 412 aa12.83□□□□□ -0.36
LIMS3-201ENST00000437679 TBX1O43435 398 aa12.83□□□□□ -0.36
LIMS3-201ENST00000437679 MITFO75030 526 aaPredicted RBP12.83□□□□□ -0.36
LIMS3-201ENST00000437679 LYNP07948 512 aa12.83□□□□□ -0.36
LIMS3-201ENST00000437679 SBK2P0C263 348 aa12.83□□□□□ -0.36
LIMS3-201ENST00000437679 SRD5A1P18405 259 aa12.83□□□□□ -0.36
LIMS3-201ENST00000437679 SLC2A5P22732 501 aa12.83□□□□□ -0.36
LIMS3-201ENST00000437679 NAA10P41227 235 aaPredicted RBP12.83□□□□□ -0.36
LIMS3-201ENST00000437679 LCN1P1Q5VSP4 162 aa12.83□□□□□ -0.36
LIMS3-201ENST00000437679 IL17RELQ6ZVW7 336 aa12.83□□□□□ -0.36
LIMS3-201ENST00000437679 TMEM186Q96B77 213 aa12.83□□□□□ -0.36
LIMS3-201ENST00000437679 AMELYQ99218 206 aa12.83□□□□□ -0.36
LIMS3-201ENST00000437679 REPIN1Q9BWE0 567 aaKnown RBP12.83□□□□□ -0.36
LIMS3-201ENST00000437679 GCM1Q9NP62 436 aa12.83□□□□□ -0.36
LIMS3-201ENST00000437679 DCAF16Q9NXF7 216 aa12.83□□□□□ -0.36
LIMS3-201ENST00000437679 UBAP1Q9NZ09 502 aa12.83□□□□□ -0.36
LIMS3-201ENST00000437679 WNK2Q9Y3S1 2297 aa12.83□□□□□ -0.36
LIMS3-201ENST00000437679 A0A1B0GWJ7 208 aa12.82□□□□□ -0.36
LIMS3-201ENST00000437679 KIAA1324LA8MWY0 1029 aaPredicted RBP12.82□□□□□ -0.36
LIMS3-201ENST00000437679 F5H5P2 479 aa12.82□□□□□ -0.36
LIMS3-201ENST00000437679 PRKYO43930 277 aa12.82□□□□□ -0.36
LIMS3-201ENST00000437679 IGHV2-5P01817 119 aa12.82□□□□□ -0.36
LIMS3-201ENST00000437679 HLA-DPB1P04440 258 aa12.82□□□□□ -0.36
LIMS3-201ENST00000437679 OPRL1P41146 370 aa12.82□□□□□ -0.36
LIMS3-201ENST00000437679 ACTR3P61158 418 aa12.82□□□□□ -0.36
LIMS3-201ENST00000437679 OR8G1Q15617 311 aa12.82□□□□□ -0.36
LIMS3-201ENST00000437679 TIGD6Q17RP2 521 aa12.82□□□□□ -0.36
LIMS3-201ENST00000437679 SLX4IPQ5VYV7 408 aa12.82□□□□□ -0.36
LIMS3-201ENST00000437679 SPICQ8N5J4 248 aa12.82□□□□□ -0.36
LIMS3-201ENST00000437679 PYDC1Q8WXC3 89 aa12.82□□□□□ -0.36
LIMS3-201ENST00000437679 TEAD3Q99594 435 aa12.82□□□□□ -0.36
LIMS3-201ENST00000437679 HIF1ANQ9NWT6 349 aa12.82□□□□□ -0.36
LIMS3-201ENST00000437679 DNAJC27Q9NZQ0 273 aa12.82□□□□□ -0.36
LIMS3-201ENST00000437679 H2AFY2Q9P0M6 372 aaPredicted RBP12.82□□□□□ -0.36
LIMS3-201ENST00000437679 LAMP5Q9UJQ1 280 aa12.82□□□□□ -0.36
LIMS3-201ENST00000437679 OAZ3Q9UMX2 235 aa12.82□□□□□ -0.36
LIMS3-201ENST00000437679 PCDHB10Q9UN67 800 aa12.82□□□□□ -0.36
LIMS3-201ENST00000437679 ATRQ13535 2644 aa12.82□□□□□ -0.36
LIMS3-201ENST00000437679 TRAV20A0A0B4J274 112 aa12.81□□□□□ -0.36
LIMS3-201ENST00000437679 C5orf63A6NC05 138 aa12.81□□□□□ -0.36
LIMS3-201ENST00000437679 LRRC30A6NM36 301 aa12.81□□□□□ -0.36
LIMS3-201ENST00000437679 ZAR1LA6NP61 321 aa12.81□□□□□ -0.36
LIMS3-201ENST00000437679 TMEM178BH3BS89 294 aa12.81□□□□□ -0.36
LIMS3-201ENST00000437679 IGHV2-70P01814 119 aa12.81□□□□□ -0.36
LIMS3-201ENST00000437679 CA6P23280 308 aa12.81□□□□□ -0.36
LIMS3-201ENST00000437679 MMP16P51512 607 aa12.81□□□□□ -0.36
LIMS3-201ENST00000437679 ZNF121P58317 390 aaPredicted RBP12.81□□□□□ -0.36
LIMS3-201ENST00000437679 BTG1P62324 171 aa12.81□□□□□ -0.36
LIMS3-201ENST00000437679 HNRNPA0Q13151 305 aaKnown RBP12.81□□□□□ -0.36
LIMS3-201ENST00000437679 KPNB1Q14974 876 aaKnown RBP12.81□□□□□ -0.36
LIMS3-201ENST00000437679 ZFP1Q6P2D0 407 aa12.81□□□□□ -0.36
LIMS3-201ENST00000437679 FAM57BQ71RH2 274 aa12.81□□□□□ -0.36
LIMS3-201ENST00000437679 ZNF771Q7L3S4 317 aaPredicted RBP12.81□□□□□ -0.36
LIMS3-201ENST00000437679 SLC16A9Q7RTY1 509 aa12.81□□□□□ -0.36
LIMS3-201ENST00000437679 MOGAT3Q86VF5 341 aa12.81□□□□□ -0.36
LIMS3-201ENST00000437679 C10orf67Q8IYJ2 551 aa12.81□□□□□ -0.36
LIMS3-201ENST00000437679 KLHL36Q8N4N3 616 aa12.81□□□□□ -0.36
LIMS3-201ENST00000437679 CELF2-AS1Q8N7Q2 184 aa12.81□□□□□ -0.36
LIMS3-201ENST00000437679 OR52H1Q8NGJ2 320 aa12.81□□□□□ -0.36
LIMS3-201ENST00000437679 ZNF420Q8TAQ5 688 aaPredicted RBP12.81□□□□□ -0.36
LIMS3-201ENST00000437679 PGAM5Q96HS1 289 aa12.81□□□□□ -0.36
LIMS3-201ENST00000437679 SIGLEC11Q96RL6 698 aa12.81□□□□□ -0.36
LIMS3-201ENST00000437679 CIB1Q99828 191 aa12.81□□□□□ -0.36
LIMS3-201ENST00000437679 OSBPL10Q9BXB5 764 aa12.81□□□□□ -0.36
LIMS3-201ENST00000437679 YIPF3Q9GZM5 350 aa12.81□□□□□ -0.36
LIMS3-201ENST00000437679 OR10A2Q9H208 303 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms