RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 ELMOD2Q8IZ81 293 aa8.73□□□□□ -1.01
CD44-207ENST00000425428 NUP37Q8NFH4 326 aa8.73□□□□□ -1.01
CD44-207ENST00000425428 GPR148Q8TDV2 347 aa8.73□□□□□ -1.01
CD44-207ENST00000425428 REEP6Q96HR9 211 aa8.73□□□□□ -1.01
CD44-207ENST00000425428 ZNF75AQ96N20 296 aa8.73□□□□□ -1.01
CD44-207ENST00000425428 OR5M11Q96RB7 305 aa8.73□□□□□ -1.01
CD44-207ENST00000425428 FAM206AQ9NX38 181 aa8.73□□□□□ -1.01
CD44-207ENST00000425428 PTTG3PQ9NZH4 202 aa8.73□□□□□ -1.01
CD44-207ENST00000425428 CKLFQ9UBR5 152 aa8.73□□□□□ -1.01
CD44-207ENST00000425428 EDARQ9UNE0 448 aa8.73□□□□□ -1.01
CD44-207ENST00000425428 DHDHQ9UQ10 334 aa8.73□□□□□ -1.01
CD44-207ENST00000425428 ZNF281Q9Y2X9 895 aa8.73□□□□□ -1.01
CD44-207ENST00000425428 PLSCR5A0PG75 271 aa8.73□□□□□ -1.01
CD44-207ENST00000425428 A1L4Q6 167 aa8.73□□□□□ -1.01
CD44-207ENST00000425428 ATP6V1G2-DDX39BF2Z307 99 aa8.73□□□□□ -1.01
CD44-207ENST00000425428 OGG1O15527 345 aa8.73□□□□□ -1.01
CD44-207ENST00000425428 PLPP2O43688 288 aa8.73□□□□□ -1.01
CD44-207ENST00000425428 ICMTO60725 284 aa8.73□□□□□ -1.01
CD44-207ENST00000425428 SMPD2O60906 423 aa8.73□□□□□ -1.01
CD44-207ENST00000425428 HLA-DPB1P04440 258 aa8.73□□□□□ -1.01
CD44-207ENST00000425428 CD1AP06126 327 aa8.73□□□□□ -1.01
CD44-207ENST00000425428 CPEP16870 476 aa8.73□□□□□ -1.01
CD44-207ENST00000425428 ACHEP22303 614 aa8.73□□□□□ -1.01
CD44-207ENST00000425428 GNALP38405 381 aa8.73□□□□□ -1.01
CD44-207ENST00000425428 DAZAP2Q15038 168 aaPredicted RBP8.73□□□□□ -1.01
CD44-207ENST00000425428 TSTQ16762 297 aaKnown RBP8.73□□□□□ -1.01
CD44-207ENST00000425428 KRTAP27-1Q3LI81 207 aa8.73□□□□□ -1.01
CD44-207ENST00000425428 ZMAT1Q5H9K5 638 aa8.73□□□□□ -1.01
CD44-207ENST00000425428 WDR38Q5JTN6 314 aa8.73□□□□□ -1.01
CD44-207ENST00000425428 ADAM5Q6NVV9 412 aa8.73□□□□□ -1.01
CD44-207ENST00000425428 CSNK2A3Q8NEV1 391 aa8.73□□□□□ -1.01
CD44-207ENST00000425428 OR8B12Q8NGG6 310 aa8.73□□□□□ -1.01
CD44-207ENST00000425428 OR13C3Q8NGS6 347 aa8.73□□□□□ -1.01
CD44-207ENST00000425428 SYNPRQ8TBG9 265 aa8.73□□□□□ -1.01
CD44-207ENST00000425428 ZNF649Q9BS31 505 aa8.73□□□□□ -1.01
CD44-207ENST00000425428 SLITRK2Q9H156 845 aa8.73□□□□□ -1.01
CD44-207ENST00000425428 FRRS1LQ9P0K9 344 aa8.73□□□□□ -1.01
CD44-207ENST00000425428 SSR3Q9UNL2 185 aa8.73□□□□□ -1.01
CD44-207ENST00000425428 GSTK1Q9Y2Q3 226 aa8.73□□□□□ -1.01
CD44-207ENST00000425428 PRR14LQ5THK1 2151 aa8.72□□□□□ -1.01
CD44-207ENST00000425428 DPRXA6NFQ7 191 aa8.72□□□□□ -1.01
CD44-207ENST00000425428 ANKRD30BLA7E2S9 258 aa8.72□□□□□ -1.01
CD44-207ENST00000425428 TIMM8AO60220 97 aaPredicted RBP8.72□□□□□ -1.01
CD44-207ENST00000425428 ISG15P05161 165 aa8.72□□□□□ -1.01
CD44-207ENST00000425428 ERCC1P07992 297 aaPredicted RBP8.72□□□□□ -1.01
CD44-207ENST00000425428 RAC2P15153 192 aa8.72□□□□□ -1.01
CD44-207ENST00000425428 JUNBP17275 347 aaPredicted RBP8.72□□□□□ -1.01
CD44-207ENST00000425428 PCMT1P22061 227 aa8.72□□□□□ -1.01
CD44-207ENST00000425428 LIPAP38571 399 aa8.72□□□□□ -1.01
CD44-207ENST00000425428 RANBP1P43487 201 aa8.72□□□□□ -1.01
CD44-207ENST00000425428 GTF2A1P52655 376 aaPredicted RBP8.72□□□□□ -1.01
CD44-207ENST00000425428 KLF3P57682 345 aaPredicted RBP8.72□□□□□ -1.01
CD44-207ENST00000425428 MZT1Q08AG7 82 aa8.72□□□□□ -1.01
CD44-207ENST00000425428 RIPPLY1Q0D2K3 151 aa8.72□□□□□ -1.01
CD44-207ENST00000425428 TPBGQ13641 420 aa8.72□□□□□ -1.01
CD44-207ENST00000425428 SYT6Q5T7P8 510 aaPredicted RBP8.72□□□□□ -1.01
CD44-207ENST00000425428 FBXL14Q8N1E6 418 aa8.72□□□□□ -1.01
CD44-207ENST00000425428 ZFP41Q8N8Y5 198 aa8.72□□□□□ -1.01
CD44-207ENST00000425428 SEMA6DQ8NFY4 1073 aa8.72□□□□□ -1.01
CD44-207ENST00000425428 OR51E1Q8TCB6 317 aa8.72□□□□□ -1.01
CD44-207ENST00000425428 GHSRQ92847 366 aa8.72□□□□□ -1.01
CD44-207ENST00000425428 MUL1Q969V5 352 aa8.72□□□□□ -1.01
CD44-207ENST00000425428 C10orf35Q96D05 121 aa8.72□□□□□ -1.01
CD44-207ENST00000425428 FAM71F1Q96KD3 344 aaPredicted RBP8.72□□□□□ -1.01
CD44-207ENST00000425428 HIST1H2AAQ96QV6 131 aa8.72□□□□□ -1.01
CD44-207ENST00000425428 TMED9Q9BVK6 235 aa8.72□□□□□ -1.01
CD44-207ENST00000425428 ABCB9Q9NP78 766 aa8.72□□□□□ -1.01
CD44-207ENST00000425428 G6PC2Q9NQR9 355 aa8.72□□□□□ -1.01
CD44-207ENST00000425428 GPR84Q9NQS5 396 aa8.72□□□□□ -1.01
CD44-207ENST00000425428 NKIRAS2Q9NYR9 191 aa8.72□□□□□ -1.01
CD44-207ENST00000425428 CGGBP1Q9UFW8 167 aaPredicted RBP8.72□□□□□ -1.01
CD44-207ENST00000425428 DUSP13Q9UII6 198 aa8.72□□□□□ -1.01
CD44-207ENST00000425428 SLC22A13Q9Y226 551 aa8.72□□□□□ -1.01
CD44-207ENST00000425428 LSM2Q9Y333 95 aaKnown RBP8.72□□□□□ -1.01
CD44-207ENST00000425428 STARD10Q9Y365 291 aa8.72□□□□□ -1.01
CD44-207ENST00000425428 DOPEY1Q5JWR5 2465 aa8.71□□□□□ -1.01
CD44-207ENST00000425428 LOC107986453A0A1B0GWG9 222 aa8.71□□□□□ -1.01
CD44-207ENST00000425428 A0A1W2PPW3 197 aa8.71□□□□□ -1.01
CD44-207ENST00000425428 CLEC18AA5D8T8 446 aa8.71□□□□□ -1.01
CD44-207ENST00000425428 A6NNC1 897 aa8.71□□□□□ -1.01
CD44-207ENST00000425428 DHRS7CA6NNS2 312 aa8.71□□□□□ -1.01
CD44-207ENST00000425428 PRR32B1ATL7 298 aa8.71□□□□□ -1.01
CD44-207ENST00000425428 ZNF879B4DU55 563 aa8.71□□□□□ -1.01
CD44-207ENST00000425428 P2RY10O00398 339 aa8.71□□□□□ -1.01
CD44-207ENST00000425428 MAGEB3O15480 346 aa8.71□□□□□ -1.01
CD44-207ENST00000425428 DHRS3O75911 302 aa8.71□□□□□ -1.01
CD44-207ENST00000425428 INMTO95050 263 aa8.71□□□□□ -1.01
CD44-207ENST00000425428 PNPP00491 289 aa8.71□□□□□ -1.01
CD44-207ENST00000425428 CALCRP30988 508 aa8.71□□□□□ -1.01
CD44-207ENST00000425428 GABRA5P31644 462 aa8.71□□□□□ -1.01
CD44-207ENST00000425428 APOBEC3AP31941 199 aaPredicted RBP8.71□□□□□ -1.01
CD44-207ENST00000425428 FABP6P51161 128 aa8.71□□□□□ -1.01
CD44-207ENST00000425428 MFGE8Q08431 387 aaPredicted RBP8.71□□□□□ -1.01
CD44-207ENST00000425428 SNAI3Q3KNW1 292 aa8.71□□□□□ -1.01
CD44-207ENST00000425428 GLYATL3Q5SZD4 288 aa8.71□□□□□ -1.01
CD44-207ENST00000425428 DMKNQ6E0U4 476 aaPredicted RBP8.71□□□□□ -1.01
CD44-207ENST00000425428 CLEC18BQ6UXF7 455 aa8.71□□□□□ -1.01
CD44-207ENST00000425428 COLCA1Q6ZS62 124 aa8.71□□□□□ -1.01
CD44-207ENST00000425428 NAA40Q86UY6 237 aa8.71□□□□□ -1.01
CD44-207ENST00000425428 CLEC18CQ8NCF0 446 aa8.71□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms