RNA–Protein interactions for RNA: ENST00000409251.7

PTPRN-202, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 1 (best) BASIC

Gene PTPRN, Length 3,622 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-202ENST00000409251 WRBO00258 174 aa11.61□□□□□ -0.55
PTPRN-202ENST00000409251 IFNA2P01563 188 aa11.61□□□□□ -0.55
PTPRN-202ENST00000409251 GAAP10253 952 aa11.61□□□□□ -0.55
PTPRN-202ENST00000409251 ACY1Q03154 408 aa11.61□□□□□ -0.55
PTPRN-202ENST00000409251 PMPCAQ10713 525 aa11.61□□□□□ -0.55
PTPRN-202ENST00000409251 SSX2Q16385 188 aa11.61□□□□□ -0.55
PTPRN-202ENST00000409251 BIVMQ86UB2 503 aa11.61□□□□□ -0.55
PTPRN-202ENST00000409251 EIF4E3Q8N5X7 224 aaKnown RBP11.61□□□□□ -0.55
PTPRN-202ENST00000409251 SFXN5Q8TD22 340 aa11.61□□□□□ -0.55
PTPRN-202ENST00000409251 PIK3IP1Q96FE7 263 aa11.61□□□□□ -0.55
PTPRN-202ENST00000409251 KIRREL1Q96J84 757 aa11.61□□□□□ -0.55
PTPRN-202ENST00000409251 TOLLIPQ9H0E2 274 aa11.61□□□□□ -0.55
PTPRN-202ENST00000409251 PLEKHA1Q9HB21 404 aa11.61□□□□□ -0.55
PTPRN-202ENST00000409251 EMC9Q9Y3B6 208 aa11.61□□□□□ -0.55
PTPRN-202ENST00000409251 LOC100289279A0A1B0GTE1 492 aa11.61□□□□□ -0.55
PTPRN-202ENST00000409251 PQLC2LA1A4F0 135 aa11.61□□□□□ -0.55
PTPRN-202ENST00000409251 ZNF727A8MUV8 499 aa11.61□□□□□ -0.55
PTPRN-202ENST00000409251 TNFRSF10CO14798 259 aa11.61□□□□□ -0.55
PTPRN-202ENST00000409251 SLC16A7O60669 478 aa11.61□□□□□ -0.55
PTPRN-202ENST00000409251 SLC2A1P11166 492 aa11.61□□□□□ -0.55
PTPRN-202ENST00000409251 OR3A2P47893 321 aa11.61□□□□□ -0.55
PTPRN-202ENST00000409251 RAB32Q13637 225 aa11.61□□□□□ -0.55
PTPRN-202ENST00000409251 TSC22D1Q15714 1073 aa11.61□□□□□ -0.55
PTPRN-202ENST00000409251 DHRS7BQ6IAN0 325 aaPredicted RBP11.61□□□□□ -0.55
PTPRN-202ENST00000409251 C16orf47Q6ZP98 133 aaPredicted RBP11.61□□□□□ -0.55
PTPRN-202ENST00000409251 HIST2H2ABQ8IUE6 130 aaPredicted RBP11.61□□□□□ -0.55
PTPRN-202ENST00000409251 LILRB2Q8N423 598 aa11.61□□□□□ -0.55
PTPRN-202ENST00000409251 C19orf47Q8N9M1 422 aaKnown RBP11.61□□□□□ -0.55
PTPRN-202ENST00000409251 NPEPL1Q8NDH3 523 aa11.61□□□□□ -0.55
PTPRN-202ENST00000409251 C15orf40Q8WUR7 153 aa11.61□□□□□ -0.55
PTPRN-202ENST00000409251 THOC3Q96J01 351 aaKnown RBP11.61□□□□□ -0.55
PTPRN-202ENST00000409251 ZNF681Q96N22 645 aa11.61□□□□□ -0.55
PTPRN-202ENST00000409251 OR51M1Q9H341 326 aa11.61□□□□□ -0.55
PTPRN-202ENST00000409251 CRLF2Q9HC73 371 aa11.61□□□□□ -0.55
PTPRN-202ENST00000409251 A0A1W2PPC1 479 aa11.61□□□□□ -0.55
PTPRN-202ENST00000409251 PATE3B3GLJ2 98 aa11.61□□□□□ -0.55
PTPRN-202ENST00000409251 TMEM150CB9EJG8 249 aa11.61□□□□□ -0.55
PTPRN-202ENST00000409251 MPIG6BO95866 241 aa11.61□□□□□ -0.55
PTPRN-202ENST00000409251 CD53P19397 219 aa11.61□□□□□ -0.55
PTPRN-202ENST00000409251 LAP3P28838 519 aa11.61□□□□□ -0.55
PTPRN-202ENST00000409251 CAMLGP49069 296 aa11.61□□□□□ -0.55
PTPRN-202ENST00000409251 DUSP8Q13202 625 aa11.61□□□□□ -0.55
PTPRN-202ENST00000409251 TMPRSS11FQ6ZWK6 438 aa11.61□□□□□ -0.55
PTPRN-202ENST00000409251 ZSCAN4Q8NAM6 433 aaPredicted RBP11.61□□□□□ -0.55
PTPRN-202ENST00000409251 OR4C3Q8NH37 302 aa11.61□□□□□ -0.55
PTPRN-202ENST00000409251 ZNF275Q9NSD4 429 aaPredicted RBP11.61□□□□□ -0.55
PTPRN-202ENST00000409251 SIT1Q9Y3P8 196 aa11.61□□□□□ -0.55
PTPRN-202ENST00000409251 ZNF705GA8MUZ8 300 aaPredicted RBP11.6□□□□□ -0.55
PTPRN-202ENST00000409251 SOX15O60248 233 aa11.6□□□□□ -0.55
PTPRN-202ENST00000409251 MPZL1O95297 269 aa11.6□□□□□ -0.55
PTPRN-202ENST00000409251 OPN1LWP04000 364 aa11.6□□□□□ -0.55
PTPRN-202ENST00000409251 CXCL12P48061 93 aa11.6□□□□□ -0.55
PTPRN-202ENST00000409251 MISPQ8IVT2 679 aa11.6□□□□□ -0.55
PTPRN-202ENST00000409251 RNF113BQ8IZP6 322 aaKnown RBP11.6□□□□□ -0.55
PTPRN-202ENST00000409251 EID2Q8N6I1 236 aa11.6□□□□□ -0.55
PTPRN-202ENST00000409251 ZNF321PQ8N8H1 164 aa11.6□□□□□ -0.55
PTPRN-202ENST00000409251 RAB3CQ96E17 227 aa11.6□□□□□ -0.55
PTPRN-202ENST00000409251 SCARF2Q96GP6 870 aaPredicted RBP11.6□□□□□ -0.55
PTPRN-202ENST00000409251 POLR1DQ9Y2S0 133 aa11.6□□□□□ -0.55
PTPRN-202ENST00000409251 C9orf170A2RU37 121 aa11.6□□□□□ -0.55
PTPRN-202ENST00000409251 XRCC2O43543 280 aa11.6□□□□□ -0.55
PTPRN-202ENST00000409251 NR2C1P13056 603 aa11.6□□□□□ -0.55
PTPRN-202ENST00000409251 EIF2S3P41091 472 aaKnown RBP11.6□□□□□ -0.55
PTPRN-202ENST00000409251 LYG2Q86SG7 212 aa11.6□□□□□ -0.55
PTPRN-202ENST00000409251 STX12Q86Y82 276 aa11.6□□□□□ -0.55
PTPRN-202ENST00000409251 UBAC2Q8NBM4 344 aa11.6□□□□□ -0.55
PTPRN-202ENST00000409251 METTL21AQ8WXB1 218 aa11.6□□□□□ -0.55
PTPRN-202ENST00000409251 TSLPQ969D9 159 aa11.6□□□□□ -0.55
PTPRN-202ENST00000409251 SERINC2Q96SA4 455 aa11.6□□□□□ -0.55
PTPRN-202ENST00000409251 NUDT22Q9BRQ3 303 aa11.6□□□□□ -0.55
PTPRN-202ENST00000409251 ZNF701Q9NV72 531 aaPredicted RBP11.6□□□□□ -0.55
PTPRN-202ENST00000409251 KLK13Q9UKR3 277 aa11.6□□□□□ -0.55
PTPRN-202ENST00000409251 COLCA2A8K830 154 aa11.6□□□□□ -0.55
PTPRN-202ENST00000409251 UMAD1C9J7I0 102 aa11.6□□□□□ -0.55
PTPRN-202ENST00000409251 SERPINA2P20848 420 aa11.6□□□□□ -0.55
PTPRN-202ENST00000409251 OMGP23515 440 aa11.6□□□□□ -0.55
PTPRN-202ENST00000409251 CD27P26842 260 aa11.6□□□□□ -0.55
PTPRN-202ENST00000409251 CALCRP30988 508 aa11.6□□□□□ -0.55
PTPRN-202ENST00000409251 FBXW4P57775 412 aa11.6□□□□□ -0.55
PTPRN-202ENST00000409251 RSU1Q15404 277 aa11.6□□□□□ -0.55
PTPRN-202ENST00000409251 ARHGAP11BQ3KRB8 267 aa11.6□□□□□ -0.55
PTPRN-202ENST00000409251 LURAP1LQ8IV03 231 aa11.6□□□□□ -0.55
PTPRN-202ENST00000409251 ZNF561Q8N587 486 aa11.6□□□□□ -0.55
PTPRN-202ENST00000409251 GGACTQ9BVM4 153 aa11.6□□□□□ -0.55
PTPRN-202ENST00000409251 KCNJ16Q9NPI9 418 aa11.6□□□□□ -0.55
PTPRN-202ENST00000409251 MRPS17Q9Y2R5 130 aaKnown RBP11.6□□□□□ -0.55
PTPRN-202ENST00000409251 KLF2Q9Y5W3 355 aaPredicted RBP11.6□□□□□ -0.55
PTPRN-202ENST00000409251 KIR2DS5A0A0G2JLQ3 304 aa11.59□□□□□ -0.55
PTPRN-202ENST00000409251 A0A0G2JNG1 304 aa11.59□□□□□ -0.55
PTPRN-202ENST00000409251 PRR19A6NJB7 356 aa11.59□□□□□ -0.55
PTPRN-202ENST00000409251 KIR2DS3K7RE56 304 aa11.59□□□□□ -0.55
PTPRN-202ENST00000409251 EIF4E2O60573 245 aaKnown RBP11.59□□□□□ -0.55
PTPRN-202ENST00000409251 GLCEO94923 617 aa11.59□□□□□ -0.55
PTPRN-202ENST00000409251 NXPH3O95157 252 aa11.59□□□□□ -0.55
PTPRN-202ENST00000409251 ZNF10P21506 573 aaPredicted RBP11.59□□□□□ -0.55
PTPRN-202ENST00000409251 TUBG1P23258 451 aa11.59□□□□□ -0.55
PTPRN-202ENST00000409251 KIR2DS5Q14953 304 aa11.59□□□□□ -0.55
PTPRN-202ENST00000409251 MIDNQ504T8 468 aa11.59□□□□□ -0.55
PTPRN-202ENST00000409251 ZC3HAV1Q7Z2W4 902 aaKnown RBP11.59□□□□□ -0.55
PTPRN-202ENST00000409251 SLC25A21Q9BQT8 299 aaPredicted RBP11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms