RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 TFAP2AP05549 437 aa3.45□□□□□ -1.86
LIG4-201ENST00000356922 PIPP12273 146 aaPredicted RBP3.45□□□□□ -1.86
LIG4-201ENST00000356922 NR4A1P22736 598 aa3.45□□□□□ -1.86
LIG4-201ENST00000356922 TGFBR1P36897 503 aa3.45□□□□□ -1.86
LIG4-201ENST00000356922 LIPAP38571 399 aa3.45□□□□□ -1.86
LIG4-201ENST00000356922 CX3CR1P49238 355 aa3.45□□□□□ -1.86
LIG4-201ENST00000356922 SELENOVP59797 346 aa3.45□□□□□ -1.86
LIG4-201ENST00000356922 PSG7Q13046 419 aa3.45□□□□□ -1.86
LIG4-201ENST00000356922 RAB35Q15286 201 aa3.45□□□□□ -1.86
LIG4-201ENST00000356922 ADIPOQQ15848 244 aa3.45□□□□□ -1.86
LIG4-201ENST00000356922 SSX1Q16384 188 aa3.45□□□□□ -1.86
LIG4-201ENST00000356922 GLYATL3Q5SZD4 288 aa3.45□□□□□ -1.86
LIG4-201ENST00000356922 FAM27D1Q5T7N8 215 aa3.45□□□□□ -1.86
LIG4-201ENST00000356922 TMEM53Q6P2H8 277 aa3.45□□□□□ -1.86
LIG4-201ENST00000356922 Q6ZR03 302 aa3.45□□□□□ -1.86
LIG4-201ENST00000356922 FAM220AQ7Z4H9 259 aa3.45□□□□□ -1.86
LIG4-201ENST00000356922 KRT77Q7Z794 578 aa3.45□□□□□ -1.86
LIG4-201ENST00000356922 YIPF7Q8N8F6 280 aa3.45□□□□□ -1.86
LIG4-201ENST00000356922 ZNF454Q8N9F8 522 aa3.45□□□□□ -1.86
LIG4-201ENST00000356922 BHLHE23Q8NDY6 225 aa3.45□□□□□ -1.86
LIG4-201ENST00000356922 ABHD4Q8TB40 342 aa3.45□□□□□ -1.86
LIG4-201ENST00000356922 OR51E1Q8TCB6 317 aa3.45□□□□□ -1.86
LIG4-201ENST00000356922 DVL3Q92997 716 aaPredicted RBP3.45□□□□□ -1.86
LIG4-201ENST00000356922 MRPL48Q96GC5 212 aaKnown RBP3.45□□□□□ -1.86
LIG4-201ENST00000356922 MARS2Q96GW9 593 aaKnown RBP3.45□□□□□ -1.86
LIG4-201ENST00000356922 CYYR1Q96J86 154 aa3.45□□□□□ -1.86
LIG4-201ENST00000356922 C1QTNF5Q9BXJ0 243 aa3.45□□□□□ -1.86
LIG4-201ENST00000356922 MROQ9BYG7 248 aa3.45□□□□□ -1.86
LIG4-201ENST00000356922 FGF23Q9GZV9 251 aaPredicted RBP3.45□□□□□ -1.86
LIG4-201ENST00000356922 RNF167Q9H6Y7 350 aa3.45□□□□□ -1.86
LIG4-201ENST00000356922 PLEKHF2Q9H8W4 249 aa3.45□□□□□ -1.86
LIG4-201ENST00000356922 CA10Q9NS85 328 aa3.45□□□□□ -1.86
LIG4-201ENST00000356922 CNOT2Q9NZN8 540 aaKnown RBP3.45□□□□□ -1.86
LIG4-201ENST00000356922 A0A1W2PPK0 400 aa3.45□□□□□ -1.86
LIG4-201ENST00000356922 METTL15A6NJ78 407 aa3.45□□□□□ -1.86
LIG4-201ENST00000356922 ZNF878C9JN71 531 aa3.45□□□□□ -1.86
LIG4-201ENST00000356922 H0YL77 283 aa3.45□□□□□ -1.86
LIG4-201ENST00000356922 CRYAAP02489 173 aa3.45□□□□□ -1.86
LIG4-201ENST00000356922 LCATP04180 440 aa3.45□□□□□ -1.86
LIG4-201ENST00000356922 HLA-DPB1P04440 258 aa3.45□□□□□ -1.86
LIG4-201ENST00000356922 H2BFMP0C1H6 154 aa3.45□□□□□ -1.86
LIG4-201ENST00000356922 HOXB1P14653 301 aaPredicted RBP3.45□□□□□ -1.86
LIG4-201ENST00000356922 PCBD1P61457 104 aa3.45□□□□□ -1.86
LIG4-201ENST00000356922 SCRN3Q0VDG4 424 aa3.45□□□□□ -1.86
LIG4-201ENST00000356922 KLHL22Q53GT1 634 aa3.45□□□□□ -1.86
LIG4-201ENST00000356922 RBM48Q5RL73 367 aaKnown RBP3.45□□□□□ -1.86
LIG4-201ENST00000356922 OR2G2Q8NGZ5 317 aa3.45□□□□□ -1.86
LIG4-201ENST00000356922 SLC25A40Q8TBP6 338 aa3.45□□□□□ -1.86
LIG4-201ENST00000356922 KLF14Q8TD94 323 aaPredicted RBP3.45□□□□□ -1.86
LIG4-201ENST00000356922 TMEM203Q969S6 136 aa3.45□□□□□ -1.86
LIG4-201ENST00000356922 PGLYRP3Q96LB9 341 aa3.45□□□□□ -1.86
LIG4-201ENST00000356922 KCNJ15Q99712 375 aa3.45□□□□□ -1.86
LIG4-201ENST00000356922 JAM3Q9BX67 310 aa3.45□□□□□ -1.86
LIG4-201ENST00000356922 MRPL37Q9BZE1 423 aaKnown RBP3.45□□□□□ -1.86
LIG4-201ENST00000356922 PBOV1Q9GZY1 135 aa3.45□□□□□ -1.86
LIG4-201ENST00000356922 BABAM2Q9NXR7 383 aa3.45□□□□□ -1.86
LIG4-201ENST00000356922 AMDHD2Q9Y303 409 aa3.45□□□□□ -1.86
LIG4-201ENST00000356922 SPEF1Q9Y4P9 236 aa3.45□□□□□ -1.86
LIG4-201ENST00000356922 SNX5Q9Y5X3 404 aa3.45□□□□□ -1.86
LIG4-201ENST00000356922 CHD3Q12873 2000 aaKnown RBP3.45□□□□□ -1.86
LIG4-201ENST00000356922 SHISA3A0PJX4 238 aa3.45□□□□□ -1.86
LIG4-201ENST00000356922 MAGEA13PA6NCF6 341 aa3.45□□□□□ -1.86
LIG4-201ENST00000356922 EFCAB10A6NFE3 127 aa3.45□□□□□ -1.86
LIG4-201ENST00000356922 OR4C45A6NMZ5 311 aa3.45□□□□□ -1.86
LIG4-201ENST00000356922 P2RY10O00398 339 aa3.45□□□□□ -1.86
LIG4-201ENST00000356922 TBX1O43435 398 aa3.45□□□□□ -1.86
LIG4-201ENST00000356922 RGS10O43665 173 aa3.45□□□□□ -1.86
LIG4-201ENST00000356922 PFDN1O60925 122 aa3.45□□□□□ -1.86
LIG4-201ENST00000356922 GDI2P50395 445 aaKnown RBP3.45□□□□□ -1.86
LIG4-201ENST00000356922 MMP16P51512 607 aa3.45□□□□□ -1.86
LIG4-201ENST00000356922 BLVRAP53004 296 aa3.45□□□□□ -1.86
LIG4-201ENST00000356922 MED22Q15528 200 aa3.45□□□□□ -1.86
LIG4-201ENST00000356922 OR2T2Q6IF00 324 aa3.45□□□□□ -1.86
LIG4-201ENST00000356922 ZNF544Q6NX49 715 aa3.45□□□□□ -1.86
LIG4-201ENST00000356922 ARL9Q6T311 187 aa3.45□□□□□ -1.86
LIG4-201ENST00000356922 PRSS48Q7RTY5 328 aa3.45□□□□□ -1.86
LIG4-201ENST00000356922 CATSPERDQ86XM0 798 aa3.45□□□□□ -1.86
LIG4-201ENST00000356922 IQCF2Q8IXL9 164 aa3.45□□□□□ -1.86
LIG4-201ENST00000356922 ZNF283Q8N7M2 679 aa3.45□□□□□ -1.86
LIG4-201ENST00000356922 FAM169BQ8N8A8 192 aa3.45□□□□□ -1.86
LIG4-201ENST00000356922 OR1J1Q8NGS3 322 aa3.45□□□□□ -1.86
LIG4-201ENST00000356922 IPCEF1Q8WWN9 437 aaPredicted RBP3.45□□□□□ -1.86
LIG4-201ENST00000356922 AKAP1Q92667 903 aaKnown RBP eCLIP3.45□□□□□ -1.86
LIG4-201ENST00000356922 ZDHHC16Q969W1 377 aa3.45□□□□□ -1.86
LIG4-201ENST00000356922 OPALINQ96PE5 141 aa3.45□□□□□ -1.86
LIG4-201ENST00000356922 DOK1Q99704 481 aa3.45□□□□□ -1.86
LIG4-201ENST00000356922 SPOCK3Q9BQ16 436 aa3.45□□□□□ -1.86
LIG4-201ENST00000356922 SYT3Q9BQG1 590 aa3.45□□□□□ -1.86
LIG4-201ENST00000356922 NAA50Q9GZZ1 169 aaKnown RBP3.45□□□□□ -1.86
LIG4-201ENST00000356922 HDHD2Q9H0R4 259 aa3.45□□□□□ -1.86
LIG4-201ENST00000356922 MSL2Q9HCI7 577 aa3.45□□□□□ -1.86
LIG4-201ENST00000356922 VCX3AQ9NNX9 186 aa3.45□□□□□ -1.86
LIG4-201ENST00000356922 PTTG3PQ9NZH4 202 aa3.45□□□□□ -1.86
LIG4-201ENST00000356922 DUSP13Q9UII6 198 aa3.45□□□□□ -1.86
LIG4-201ENST00000356922 ANK3Q12955 4377 aaKnown RBP3.45□□□□□ -1.86
LIG4-201ENST00000356922 CREBBPQ92793 2442 aa3.45□□□□□ -1.86
LIG4-201ENST00000356922 RAI1Q7Z5J4 1906 aaPredicted RBP3.45□□□□□ -1.86
LIG4-201ENST00000356922 ZNF670-ZNF695F2Z2N8 137 aa3.44□□□□□ -1.86
LIG4-201ENST00000356922 ICMTO60725 284 aa3.44□□□□□ -1.86
LIG4-201ENST00000356922 IGLV3-1P01715 115 aa3.44□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms