RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 BLVRAP53004 296 aa8□□□□□ -1.13
USP4-202ENST00000351842 CAV3P56539 151 aa8□□□□□ -1.13
USP4-202ENST00000351842 VBP1P61758 197 aa8□□□□□ -1.13
USP4-202ENST00000351842 CSNK2BP67870 215 aa8□□□□□ -1.13
USP4-202ENST00000351842 C4orf17Q53FE4 359 aa8□□□□□ -1.13
USP4-202ENST00000351842 BCL2L15Q5TBC7 163 aa8□□□□□ -1.13
USP4-202ENST00000351842 C22orf42Q6IC83 251 aa8□□□□□ -1.13
USP4-202ENST00000351842 ZNF584Q8IVC4 421 aa8□□□□□ -1.13
USP4-202ENST00000351842 CENPSQ8N2Z9 138 aa8□□□□□ -1.13
USP4-202ENST00000351842 NANOGP1Q8N7R0 232 aa8□□□□□ -1.13
USP4-202ENST00000351842 TRMT10AQ8TBZ6 339 aaKnown RBP8□□□□□ -1.13
USP4-202ENST00000351842 NANOS1Q8WY41 292 aaKnown RBP8□□□□□ -1.13
USP4-202ENST00000351842 PIK3IP1Q96FE7 263 aa8□□□□□ -1.13
USP4-202ENST00000351842 OR14A2Q96R54 314 aa8□□□□□ -1.13
USP4-202ENST00000351842 SYT3Q9BQG1 590 aa8□□□□□ -1.13
USP4-202ENST00000351842 TREM2Q9NZC2 230 aa8□□□□□ -1.13
USP4-202ENST00000351842 PLAUP00749 431 aa7.99□□□□□ -1.13
USP4-202ENST00000351842 HLA-DPB1P04440 258 aa7.99□□□□□ -1.13
USP4-202ENST00000351842 GADD45AP24522 165 aa7.99□□□□□ -1.13
USP4-202ENST00000351842 TGM4P49221 684 aa7.99□□□□□ -1.13
USP4-202ENST00000351842 ZNF846Q147U1 533 aa7.99□□□□□ -1.13
USP4-202ENST00000351842 P2RY6Q15077 328 aa7.99□□□□□ -1.13
USP4-202ENST00000351842 GUSBP1Q15486 140 aa7.99□□□□□ -1.13
USP4-202ENST00000351842 CEP78Q5JTW2 689 aa7.99□□□□□ -1.13
USP4-202ENST00000351842 UBE2UQ5VVX9 321 aa7.99□□□□□ -1.13
USP4-202ENST00000351842 RFPL4BQ6ZWI9 263 aa7.99□□□□□ -1.13
USP4-202ENST00000351842 MFSD4AQ8N468 514 aa7.99□□□□□ -1.13
USP4-202ENST00000351842 ITLN2Q8WWU7 325 aaPredicted RBP7.99□□□□□ -1.13
USP4-202ENST00000351842 SPTSSAQ969W0 71 aa7.99□□□□□ -1.13
USP4-202ENST00000351842 RFT1Q96AA3 541 aa7.99□□□□□ -1.13
USP4-202ENST00000351842 PLEKHA1Q9HB21 404 aa7.99□□□□□ -1.13
USP4-202ENST00000351842 GPR84Q9NQS5 396 aa7.99□□□□□ -1.13
USP4-202ENST00000351842 UNC79Q9P2D8 2635 aa7.99□□□□□ -1.13
USP4-202ENST00000351842 TACSTD2P09758 323 aa7.99□□□□□ -1.13
USP4-202ENST00000351842 BCAP31P51572 246 aa7.99□□□□□ -1.13
USP4-202ENST00000351842 PCBD1P61457 104 aa7.99□□□□□ -1.13
USP4-202ENST00000351842 NCS1P62166 190 aa7.99□□□□□ -1.13
USP4-202ENST00000351842 BSPH1Q075Z2 132 aa7.99□□□□□ -1.13
USP4-202ENST00000351842 SNTB2Q13425 540 aaKnown RBP7.99□□□□□ -1.13
USP4-202ENST00000351842 WDR31Q8NA23 367 aa7.99□□□□□ -1.13
USP4-202ENST00000351842 OR5D18Q8NGL1 313 aa7.99□□□□□ -1.13
USP4-202ENST00000351842 OR1J1Q8NGS3 322 aa7.99□□□□□ -1.13
USP4-202ENST00000351842 LILRB4Q8NHJ6 448 aa7.99□□□□□ -1.13
USP4-202ENST00000351842 DYNC2LI1Q8TCX1 351 aa7.99□□□□□ -1.13
USP4-202ENST00000351842 S100ZQ8WXG8 99 aa7.99□□□□□ -1.13
USP4-202ENST00000351842 UFD1Q92890 307 aa7.99□□□□□ -1.13
USP4-202ENST00000351842 OR2J1Q9GZK6 312 aa7.99□□□□□ -1.13
USP4-202ENST00000351842 WDR12Q9GZL7 423 aaKnown RBP7.99□□□□□ -1.13
USP4-202ENST00000351842 FRRS1LQ9P0K9 344 aa7.99□□□□□ -1.13
USP4-202ENST00000351842 OR52A1Q9UKL2 312 aa7.99□□□□□ -1.13
USP4-202ENST00000351842 EXOGQ9Y2C4 368 aaKnown RBP7.99□□□□□ -1.13
USP4-202ENST00000351842 RBMX2Q9Y388 322 aaKnown RBP7.99□□□□□ -1.13
USP4-202ENST00000351842 A3GALT2U3KPV4 340 aa7.99□□□□□ -1.13
USP4-202ENST00000351842 NOTOA8MTQ0 251 aa7.99□□□□□ -1.13
USP4-202ENST00000351842 FZD7O75084 574 aa7.99□□□□□ -1.13
USP4-202ENST00000351842 CRYAAP02489 173 aa7.99□□□□□ -1.13
USP4-202ENST00000351842 CALCBP10092 127 aa7.99□□□□□ -1.13
USP4-202ENST00000351842 TPTEP56180 551 aa7.99□□□□□ -1.13
USP4-202ENST00000351842 ACTA2P62736 377 aa7.99□□□□□ -1.13
USP4-202ENST00000351842 ACTG2P63267 376 aa7.99□□□□□ -1.13
USP4-202ENST00000351842 OR2T2Q6IF00 324 aa7.99□□□□□ -1.13
USP4-202ENST00000351842 OR8B12Q8NGG6 310 aa7.99□□□□□ -1.13
USP4-202ENST00000351842 OR2G2Q8NGZ5 317 aa7.99□□□□□ -1.13
USP4-202ENST00000351842 RNF133Q8WVZ7 376 aa7.99□□□□□ -1.13
USP4-202ENST00000351842 PLPPR2Q96GM1 343 aa7.99□□□□□ -1.13
USP4-202ENST00000351842 OPALINQ96PE5 141 aa7.99□□□□□ -1.13
USP4-202ENST00000351842 NEURL2Q9BR09 285 aa7.99□□□□□ -1.13
USP4-202ENST00000351842 LINC00470Q9BZP3 86 aa7.99□□□□□ -1.13
USP4-202ENST00000351842 FGF20Q9NP95 211 aaPredicted RBP7.99□□□□□ -1.13
USP4-202ENST00000351842 CRIM1Q9NZV1 1036 aa7.99□□□□□ -1.13
USP4-202ENST00000351842 NDRG3Q9UGV2 375 aa7.99□□□□□ -1.13
USP4-202ENST00000351842 STARD10Q9Y365 291 aa7.99□□□□□ -1.13
USP4-202ENST00000351842 CLDN25C9JDP6 229 aa7.98□□□□□ -1.13
USP4-202ENST00000351842 NCR1O76036 304 aa7.98□□□□□ -1.13
USP4-202ENST00000351842 IGHA1P01876 353 aa7.98□□□□□ -1.13
USP4-202ENST00000351842 MAS1P04201 325 aa7.98□□□□□ -1.13
USP4-202ENST00000351842 CST2P09228 141 aa7.98□□□□□ -1.13
USP4-202ENST00000351842 MMP7P09237 267 aaPredicted RBP7.98□□□□□ -1.13
USP4-202ENST00000351842 FAHP16930 419 aa7.98□□□□□ -1.13
USP4-202ENST00000351842 TGFBR2P37173 567 aa7.98□□□□□ -1.13
USP4-202ENST00000351842 EIF2B2P49770 351 aaKnown RBP7.98□□□□□ -1.13
USP4-202ENST00000351842 TBC1D28Q2M2D7 210 aa7.98□□□□□ -1.13
USP4-202ENST00000351842 PRSS35Q8N3Z0 413 aa7.98□□□□□ -1.13
USP4-202ENST00000351842 DTX3Q8N9I9 347 aa7.98□□□□□ -1.13
USP4-202ENST00000351842 DNAAF1Q8NEP3 725 aa7.98□□□□□ -1.13
USP4-202ENST00000351842 OR5AK2Q8NH90 309 aa7.98□□□□□ -1.13
USP4-202ENST00000351842 ZFP3Q96NJ6 502 aa7.98□□□□□ -1.13
USP4-202ENST00000351842 NXF2Q9GZY0 626 aaKnown RBP7.98□□□□□ -1.13
USP4-202ENST00000351842 PBOV1Q9GZY1 135 aa7.98□□□□□ -1.13
USP4-202ENST00000351842 SLC17A5Q9NRA2 495 aa7.98□□□□□ -1.13
USP4-202ENST00000351842 HAO2Q9NYQ3 351 aa7.98□□□□□ -1.13
USP4-202ENST00000351842 ATP23Q9Y6H3 246 aa7.98□□□□□ -1.13
USP4-202ENST00000351842 PMF1-BGLAPU3KQ54 211 aa7.98□□□□□ -1.13
USP4-202ENST00000351842 SYT7O43581 403 aa7.98□□□□□ -1.13
USP4-202ENST00000351842 CLDN14O95500 239 aa7.98□□□□□ -1.13
USP4-202ENST00000351842 OPRL1P41146 370 aa7.98□□□□□ -1.13
USP4-202ENST00000351842 ASCL1P50553 236 aa7.98□□□□□ -1.13
USP4-202ENST00000351842 LSM6P62312 80 aaKnown RBP7.98□□□□□ -1.13
USP4-202ENST00000351842 HOXA4Q00056 320 aaPredicted RBP7.98□□□□□ -1.13
USP4-202ENST00000351842 SLC25A30Q5SVS4 291 aa7.98□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms